Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02258 and SMc02259 are separated by 107 nucleotides SMc02259 and SMc02260 are separated by 36 nucleotides SMc02260 and SMc02261 are separated by 189 nucleotides SMc02261 and SMc02262 are separated by 23 nucleotides
SMc02258: SMc02258 - ABC transporter permease, at 623,300 to 624,025
SMc02258
SMc02259: SMc02259 - periplasmic binding ABC transporter protein, at 624,133 to 624,915
SMc02259
SMc02260: SMc02260 - ABC transporter ATP-binding protein, at 624,952 to 625,806
SMc02260
SMc02261: SMc02261 - transcriptional regulator, at 625,996 to 626,610
SMc02261
SMc02262: SMc02262 - aminotransferase, at 626,634 to 627,824
SMc02262
Position (kb) 624
625
626 Strain fitness (log2 ratio) -1
0
1 at 624.037 kb on - strand at 624.143 kb on + strand at 624.161 kb on + strand at 624.161 kb on + strand at 624.186 kb on + strand at 624.311 kb on + strand, within SMc02259 at 624.431 kb on + strand, within SMc02259 at 624.432 kb on - strand, within SMc02259 at 624.432 kb on - strand, within SMc02259 at 624.477 kb on - strand, within SMc02259 at 624.477 kb on - strand, within SMc02259 at 624.477 kb on - strand, within SMc02259 at 624.588 kb on - strand, within SMc02259 at 624.588 kb on - strand, within SMc02259 at 624.590 kb on + strand, within SMc02259 at 625.277 kb on + strand, within SMc02260 at 625.295 kb on + strand, within SMc02260 at 625.296 kb on - strand, within SMc02260 at 625.360 kb on + strand, within SMc02260 at 625.871 kb on + strand at 626.188 kb on + strand, within SMc02261 at 626.380 kb on + strand, within SMc02261 at 626.381 kb on - strand, within SMc02261 at 626.609 kb on - strand at 626.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 624,037 - -0.1 624,143 + +0.6 624,161 + -0.1 624,161 + +1.6 624,186 + -1.2 624,311 + SMc02259 0.23 +0.1 624,431 + SMc02259 0.38 +0.2 624,432 - SMc02259 0.38 -0.8 624,432 - SMc02259 0.38 -0.6 624,477 - SMc02259 0.44 -0.4 624,477 - SMc02259 0.44 +0.4 624,477 - SMc02259 0.44 +0.1 624,588 - SMc02259 0.58 -0.4 624,588 - SMc02259 0.58 -0.1 624,590 + SMc02259 0.58 -0.4 625,277 + SMc02260 0.38 +0.0 625,295 + SMc02260 0.40 +0.7 625,296 - SMc02260 0.40 +0.3 625,360 + SMc02260 0.48 +0.6 625,871 + -0.2 626,188 + SMc02261 0.31 -0.1 626,380 + SMc02261 0.62 +0.2 626,381 - SMc02261 0.63 +0.2 626,609 - -0.3 626,640 + -0.5
Or see this region's nucleotide sequence