Strain Fitness in Sinorhizobium meliloti 1021 around SMc02077

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02078 and SMc02077 are separated by 58 nucleotidesSMc02077 and SMc02076 are separated by 204 nucleotides SMc02078: SMc02078 - exopolysaccharide biosynthesis regulatory protein, at 1,637,310 to 1,638,116 SMc02078 SMc02077: SMc02077 - exodeoxyribonuclease III protein, at 1,638,175 to 1,638,966 SMc02077 SMc02076: SMc02076 - cardiolipin synthetase transmembrane protein, at 1,639,171 to 1,640,634 SMc02076 Position (kb) 1638 1639Strain fitness (log2 ratio) -2 -1 0 1at 1637.190 kb on + strandat 1637.246 kb on + strandat 1638.152 kb on - strandat 1638.205 kb on + strandat 1638.452 kb on + strand, within SMc02077at 1638.452 kb on + strand, within SMc02077at 1638.641 kb on + strand, within SMc02077at 1638.642 kb on - strand, within SMc02077at 1638.642 kb on - strand, within SMc02077at 1639.124 kb on + strandat 1639.125 kb on - strandat 1639.158 kb on + strandat 1639.161 kb on - strandat 1639.192 kb on + strandat 1639.193 kb on - strandat 1639.568 kb on - strand, within SMc02076at 1639.568 kb on - strand, within SMc02076at 1639.626 kb on + strand, within SMc02076at 1639.626 kb on + strand, within SMc02076at 1639.756 kb on + strand, within SMc02076at 1639.756 kb on + strand, within SMc02076at 1639.757 kb on - strand, within SMc02076at 1639.800 kb on + strand, within SMc02076at 1639.801 kb on - strand, within SMc02076at 1639.826 kb on - strand, within SMc02076

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,637,190 + -0.1
1,637,246 + -0.1
1,638,152 - +1.2
1,638,205 + +0.7
1,638,452 + SMc02077 0.35 +0.7
1,638,452 + SMc02077 0.35 -0.4
1,638,641 + SMc02077 0.59 +1.5
1,638,642 - SMc02077 0.59 +1.2
1,638,642 - SMc02077 0.59 +0.6
1,639,124 + +0.0
1,639,125 - -0.6
1,639,158 + -0.0
1,639,161 - -0.2
1,639,192 + -0.3
1,639,193 - -0.1
1,639,568 - SMc02076 0.27 -0.0
1,639,568 - SMc02076 0.27 -1.4
1,639,626 + SMc02076 0.31 -0.5
1,639,626 + SMc02076 0.31 -0.5
1,639,756 + SMc02076 0.40 -0.1
1,639,756 + SMc02076 0.40 -0.2
1,639,757 - SMc02076 0.40 -0.1
1,639,800 + SMc02076 0.43 -0.8
1,639,801 - SMc02076 0.43 -0.2
1,639,826 - SMc02076 0.45 -1.8

Or see this region's nucleotide sequence