Strain Fitness in Sinorhizobium meliloti 1021 around SMc01930

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01929 and SMc01930 are separated by 58 nucleotidesSMc01930 and SMc01931 are separated by 22 nucleotidesSMc01931 and SMc01932 are separated by 86 nucleotidesSMc01932 and SMc01933 overlap by 7 nucleotides SMc01929: SMc01929 - hypothetical protein, at 1,394,904 to 1,396,571 SMc01929 SMc01930: SMc01930 - hypothetical protein, at 1,396,630 to 1,397,034 SMc01930 SMc01931: SMc01931 - hypothetical protein, at 1,397,057 to 1,397,443 SMc01931 SMc01932: SMc01932 - hypothetical protein, at 1,397,530 to 1,397,895 SMc01932 SMc01933: SMc01933 - hypothetical protein, at 1,397,889 to 1,398,104 SMc01933 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -1 0 1 2at 1396.041 kb on + strand, within SMc01929at 1396.041 kb on + strand, within SMc01929at 1396.169 kb on - strand, within SMc01929at 1396.225 kb on - strand, within SMc01929at 1396.267 kb on + strand, within SMc01929at 1396.318 kb on + strand, within SMc01929at 1396.417 kb on - strandat 1396.694 kb on - strand, within SMc01930at 1396.719 kb on + strand, within SMc01930at 1396.866 kb on + strand, within SMc01930at 1396.874 kb on - strandat 1397.081 kb on - strandat 1397.082 kb on + strandat 1397.082 kb on + strandat 1397.083 kb on - strandat 1397.113 kb on + strand, within SMc01931at 1397.113 kb on + strand, within SMc01931at 1397.113 kb on + strand, within SMc01931at 1397.114 kb on - strand, within SMc01931at 1397.114 kb on - strand, within SMc01931at 1397.201 kb on + strand, within SMc01931at 1397.202 kb on - strand, within SMc01931at 1397.375 kb on + strand, within SMc01931at 1397.496 kb on + strandat 1397.497 kb on - strandat 1397.497 kb on - strandat 1397.540 kb on + strandat 1397.552 kb on - strandat 1397.583 kb on + strand, within SMc01932at 1397.583 kb on + strand, within SMc01932at 1397.583 kb on + strand, within SMc01932at 1397.583 kb on + strand, within SMc01932at 1397.584 kb on - strand, within SMc01932at 1397.868 kb on + strandat 1397.868 kb on + strandat 1397.874 kb on + strandat 1397.891 kb on - strandat 1397.996 kb on - strand, within SMc01933at 1397.996 kb on - strand, within SMc01933

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,396,041 + SMc01929 0.68 -1.2
1,396,041 + SMc01929 0.68 +0.9
1,396,169 - SMc01929 0.76 -0.6
1,396,225 - SMc01929 0.79 +0.4
1,396,267 + SMc01929 0.82 -0.2
1,396,318 + SMc01929 0.85 -0.7
1,396,417 - +0.5
1,396,694 - SMc01930 0.16 +1.3
1,396,719 + SMc01930 0.22 +0.0
1,396,866 + SMc01930 0.58 +0.9
1,396,874 - +1.3
1,397,081 - +0.1
1,397,082 + +0.1
1,397,082 + +0.9
1,397,083 - -0.8
1,397,113 + SMc01931 0.14 -0.2
1,397,113 + SMc01931 0.14 -0.4
1,397,113 + SMc01931 0.14 +0.1
1,397,114 - SMc01931 0.15 +0.6
1,397,114 - SMc01931 0.15 +0.4
1,397,201 + SMc01931 0.37 -0.9
1,397,202 - SMc01931 0.37 -0.3
1,397,375 + SMc01931 0.82 -0.7
1,397,496 + -0.4
1,397,497 - +0.3
1,397,497 - -0.9
1,397,540 + +0.0
1,397,552 - -0.4
1,397,583 + SMc01932 0.14 -0.0
1,397,583 + SMc01932 0.14 +0.1
1,397,583 + SMc01932 0.14 +0.0
1,397,583 + SMc01932 0.14 +0.2
1,397,584 - SMc01932 0.15 -0.0
1,397,868 + -0.1
1,397,868 + -0.6
1,397,874 + +0.8
1,397,891 - +0.8
1,397,996 - SMc01933 0.50 -1.4
1,397,996 - SMc01933 0.50 +2.3

Or see this region's nucleotide sequence