Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01905 and SMc01906 are separated by 221 nucleotides SMc01906 and SMc01907 are separated by 230 nucleotides SMc01907 and SMc01908 are separated by 186 nucleotides SMc01908 and SMc01909 are separated by 254 nucleotides
SMc01905: SMc01905 - ATP-dependent protease LA protein, at 1,364,751 to 1,367,171
SMc01905
SMc01906: SMc01906 - histone-like protein, at 1,367,393 to 1,367,665
SMc01906
SMc01907: SMc01907 - hypothetical protein, at 1,367,896 to 1,370,085
SMc01907
SMc01908: SMc01908 - transcriptional regulator, at 1,370,272 to 1,370,745
SMc01908
SMc01909: SMc01909 - hypothetical protein, at 1,371,000 to 1,372,292
SMc01909
Position (kb)
1367
1368
1369
1370
1371 Strain fitness (log2 ratio)
-1
0
1 at 1367.094 kb on - strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.192 kb on - strand at 1367.350 kb on + strand at 1367.813 kb on - strand at 1367.976 kb on - strand at 1367.976 kb on - strand at 1367.976 kb on - strand at 1368.091 kb on + strand at 1368.092 kb on - strand at 1368.092 kb on - strand at 1368.092 kb on - strand at 1368.163 kb on - strand, within SMc01907 at 1368.247 kb on - strand, within SMc01907 at 1368.247 kb on - strand, within SMc01907 at 1368.484 kb on + strand, within SMc01907 at 1368.787 kb on + strand, within SMc01907 at 1368.788 kb on - strand, within SMc01907 at 1369.007 kb on - strand, within SMc01907 at 1369.014 kb on + strand, within SMc01907 at 1369.015 kb on - strand, within SMc01907 at 1369.127 kb on + strand, within SMc01907 at 1369.162 kb on + strand, within SMc01907 at 1369.163 kb on - strand, within SMc01907 at 1369.481 kb on - strand, within SMc01907 at 1369.481 kb on - strand, within SMc01907 at 1369.481 kb on - strand, within SMc01907 at 1369.682 kb on - strand, within SMc01907 at 1369.780 kb on + strand, within SMc01907 at 1369.780 kb on + strand, within SMc01907 at 1369.780 kb on + strand, within SMc01907 at 1369.781 kb on - strand, within SMc01907 at 1369.786 kb on + strand, within SMc01907 at 1369.786 kb on + strand, within SMc01907 at 1369.786 kb on + strand, within SMc01907 at 1369.786 kb on + strand, within SMc01907 at 1369.787 kb on - strand, within SMc01907 at 1369.787 kb on - strand at 1369.787 kb on - strand, within SMc01907 at 1369.787 kb on - strand, within SMc01907 at 1369.951 kb on + strand at 1369.951 kb on + strand at 1369.951 kb on + strand at 1369.951 kb on + strand at 1370.002 kb on + strand at 1370.003 kb on - strand at 1370.003 kb on - strand at 1370.083 kb on + strand at 1370.084 kb on - strand at 1370.084 kb on - strand at 1370.084 kb on - strand at 1370.363 kb on + strand, within SMc01908 at 1370.364 kb on - strand, within SMc01908 at 1370.364 kb on - strand, within SMc01908 at 1370.364 kb on - strand, within SMc01908 at 1370.364 kb on - strand, within SMc01908 at 1370.364 kb on - strand, within SMc01908 at 1370.587 kb on + strand, within SMc01908 at 1370.587 kb on + strand, within SMc01908 at 1370.588 kb on - strand, within SMc01908 at 1370.588 kb on - strand, within SMc01908 at 1370.751 kb on + strand at 1370.752 kb on - strand at 1370.758 kb on + strand at 1370.759 kb on - strand at 1370.792 kb on + strand at 1370.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,367,094 - -0.3 1,367,191 + -0.1 1,367,191 + +0.2 1,367,191 + +0.3 1,367,191 + -1.5 1,367,192 - +0.2 1,367,350 + -0.0 1,367,813 - -0.2 1,367,976 - +0.7 1,367,976 - +0.2 1,367,976 - +0.2 1,368,091 + +0.4 1,368,092 - +0.4 1,368,092 - -0.2 1,368,092 - +0.4 1,368,163 - SMc01907 0.12 +1.1 1,368,247 - SMc01907 0.16 +0.2 1,368,247 - SMc01907 0.16 +0.1 1,368,484 + SMc01907 0.27 +0.3 1,368,787 + SMc01907 0.41 +0.7 1,368,788 - SMc01907 0.41 -0.1 1,369,007 - SMc01907 0.51 +0.4 1,369,014 + SMc01907 0.51 +0.1 1,369,015 - SMc01907 0.51 -0.0 1,369,127 + SMc01907 0.56 +0.2 1,369,162 + SMc01907 0.58 -0.0 1,369,163 - SMc01907 0.58 -0.6 1,369,481 - SMc01907 0.72 +0.6 1,369,481 - SMc01907 0.72 +0.3 1,369,481 - SMc01907 0.72 +0.5 1,369,682 - SMc01907 0.82 +0.4 1,369,780 + SMc01907 0.86 +0.4 1,369,780 + SMc01907 0.86 +0.2 1,369,780 + SMc01907 0.86 +0.0 1,369,781 - SMc01907 0.86 +0.9 1,369,786 + SMc01907 0.86 -0.9 1,369,786 + SMc01907 0.86 -0.1 1,369,786 + SMc01907 0.86 +0.2 1,369,786 + SMc01907 0.86 +0.4 1,369,787 - SMc01907 0.86 +0.3 1,369,787 - +1.2 1,369,787 - SMc01907 0.86 +0.3 1,369,787 - SMc01907 0.86 +1.0 1,369,951 + +0.6 1,369,951 + +1.0 1,369,951 + +1.2 1,369,951 + +0.9 1,370,002 + +0.0 1,370,003 - +0.7 1,370,003 - +0.9 1,370,083 + +0.3 1,370,084 - +0.2 1,370,084 - -0.2 1,370,084 - -0.9 1,370,363 + SMc01908 0.19 -0.1 1,370,364 - SMc01908 0.19 +0.4 1,370,364 - SMc01908 0.19 +1.1 1,370,364 - SMc01908 0.19 -1.0 1,370,364 - SMc01908 0.19 -0.0 1,370,364 - SMc01908 0.19 -0.5 1,370,587 + SMc01908 0.66 -0.3 1,370,587 + SMc01908 0.66 -0.3 1,370,588 - SMc01908 0.67 -0.9 1,370,588 - SMc01908 0.67 +0.2 1,370,751 + +0.4 1,370,752 - -0.2 1,370,758 + -0.2 1,370,759 - -0.4 1,370,792 + -0.7 1,370,860 + +0.1
Or see this region's nucleotide sequence