Strain Fitness in Sinorhizobium meliloti 1021 around SMc01907

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01905 and SMc01906 are separated by 221 nucleotidesSMc01906 and SMc01907 are separated by 230 nucleotidesSMc01907 and SMc01908 are separated by 186 nucleotidesSMc01908 and SMc01909 are separated by 254 nucleotides SMc01905: SMc01905 - ATP-dependent protease LA protein, at 1,364,751 to 1,367,171 SMc01905 SMc01906: SMc01906 - histone-like protein, at 1,367,393 to 1,367,665 SMc01906 SMc01907: SMc01907 - hypothetical protein, at 1,367,896 to 1,370,085 SMc01907 SMc01908: SMc01908 - transcriptional regulator, at 1,370,272 to 1,370,745 SMc01908 SMc01909: SMc01909 - hypothetical protein, at 1,371,000 to 1,372,292 SMc01909 Position (kb) 1367 1368 1369 1370 1371Strain fitness (log2 ratio) -1 0 1at 1367.094 kb on - strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.191 kb on + strandat 1367.192 kb on - strandat 1367.350 kb on + strandat 1367.813 kb on - strandat 1367.976 kb on - strandat 1367.976 kb on - strandat 1367.976 kb on - strandat 1368.091 kb on + strandat 1368.092 kb on - strandat 1368.092 kb on - strandat 1368.092 kb on - strandat 1368.163 kb on - strand, within SMc01907at 1368.247 kb on - strand, within SMc01907at 1368.247 kb on - strand, within SMc01907at 1368.484 kb on + strand, within SMc01907at 1368.787 kb on + strand, within SMc01907at 1368.788 kb on - strand, within SMc01907at 1369.007 kb on - strand, within SMc01907at 1369.014 kb on + strand, within SMc01907at 1369.015 kb on - strand, within SMc01907at 1369.127 kb on + strand, within SMc01907at 1369.162 kb on + strand, within SMc01907at 1369.163 kb on - strand, within SMc01907at 1369.481 kb on - strand, within SMc01907at 1369.481 kb on - strand, within SMc01907at 1369.481 kb on - strand, within SMc01907at 1369.682 kb on - strand, within SMc01907at 1369.780 kb on + strand, within SMc01907at 1369.780 kb on + strand, within SMc01907at 1369.780 kb on + strand, within SMc01907at 1369.781 kb on - strand, within SMc01907at 1369.786 kb on + strand, within SMc01907at 1369.786 kb on + strand, within SMc01907at 1369.786 kb on + strand, within SMc01907at 1369.786 kb on + strand, within SMc01907at 1369.787 kb on - strand, within SMc01907at 1369.787 kb on - strandat 1369.787 kb on - strand, within SMc01907at 1369.787 kb on - strand, within SMc01907at 1369.951 kb on + strandat 1369.951 kb on + strandat 1369.951 kb on + strandat 1369.951 kb on + strandat 1370.002 kb on + strandat 1370.003 kb on - strandat 1370.003 kb on - strandat 1370.083 kb on + strandat 1370.084 kb on - strandat 1370.084 kb on - strandat 1370.084 kb on - strandat 1370.363 kb on + strand, within SMc01908at 1370.364 kb on - strand, within SMc01908at 1370.364 kb on - strand, within SMc01908at 1370.364 kb on - strand, within SMc01908at 1370.364 kb on - strand, within SMc01908at 1370.364 kb on - strand, within SMc01908at 1370.587 kb on + strand, within SMc01908at 1370.587 kb on + strand, within SMc01908at 1370.588 kb on - strand, within SMc01908at 1370.588 kb on - strand, within SMc01908at 1370.751 kb on + strandat 1370.752 kb on - strandat 1370.758 kb on + strandat 1370.759 kb on - strandat 1370.792 kb on + strandat 1370.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,367,094 - -0.3
1,367,191 + -0.1
1,367,191 + +0.2
1,367,191 + +0.3
1,367,191 + -1.5
1,367,192 - +0.2
1,367,350 + -0.0
1,367,813 - -0.2
1,367,976 - +0.7
1,367,976 - +0.2
1,367,976 - +0.2
1,368,091 + +0.4
1,368,092 - +0.4
1,368,092 - -0.2
1,368,092 - +0.4
1,368,163 - SMc01907 0.12 +1.1
1,368,247 - SMc01907 0.16 +0.2
1,368,247 - SMc01907 0.16 +0.1
1,368,484 + SMc01907 0.27 +0.3
1,368,787 + SMc01907 0.41 +0.7
1,368,788 - SMc01907 0.41 -0.1
1,369,007 - SMc01907 0.51 +0.4
1,369,014 + SMc01907 0.51 +0.1
1,369,015 - SMc01907 0.51 -0.0
1,369,127 + SMc01907 0.56 +0.2
1,369,162 + SMc01907 0.58 -0.0
1,369,163 - SMc01907 0.58 -0.6
1,369,481 - SMc01907 0.72 +0.6
1,369,481 - SMc01907 0.72 +0.3
1,369,481 - SMc01907 0.72 +0.5
1,369,682 - SMc01907 0.82 +0.4
1,369,780 + SMc01907 0.86 +0.4
1,369,780 + SMc01907 0.86 +0.2
1,369,780 + SMc01907 0.86 +0.0
1,369,781 - SMc01907 0.86 +0.9
1,369,786 + SMc01907 0.86 -0.9
1,369,786 + SMc01907 0.86 -0.1
1,369,786 + SMc01907 0.86 +0.2
1,369,786 + SMc01907 0.86 +0.4
1,369,787 - SMc01907 0.86 +0.3
1,369,787 - +1.2
1,369,787 - SMc01907 0.86 +0.3
1,369,787 - SMc01907 0.86 +1.0
1,369,951 + +0.6
1,369,951 + +1.0
1,369,951 + +1.2
1,369,951 + +0.9
1,370,002 + +0.0
1,370,003 - +0.7
1,370,003 - +0.9
1,370,083 + +0.3
1,370,084 - +0.2
1,370,084 - -0.2
1,370,084 - -0.9
1,370,363 + SMc01908 0.19 -0.1
1,370,364 - SMc01908 0.19 +0.4
1,370,364 - SMc01908 0.19 +1.1
1,370,364 - SMc01908 0.19 -1.0
1,370,364 - SMc01908 0.19 -0.0
1,370,364 - SMc01908 0.19 -0.5
1,370,587 + SMc01908 0.66 -0.3
1,370,587 + SMc01908 0.66 -0.3
1,370,588 - SMc01908 0.67 -0.9
1,370,588 - SMc01908 0.67 +0.2
1,370,751 + +0.4
1,370,752 - -0.2
1,370,758 + -0.2
1,370,759 - -0.4
1,370,792 + -0.7
1,370,860 + +0.1

Or see this region's nucleotide sequence