Strain Fitness in Sinorhizobium meliloti 1021 around SMc01847

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01848 and SMc01847 overlap by 4 nucleotidesSMc01847 and SMc01846 are separated by 161 nucleotides SMc01848: SMc01848 - hypothetical protein, at 2,366,015 to 2,367,265 SMc01848 SMc01847: SMc01847 - methyltransferase, at 2,367,262 to 2,367,927 SMc01847 SMc01846: SMc01846 - hydrolase glycosidase, at 2,368,089 to 2,368,874 SMc01846 Position (kb) 2367 2368Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2366.415 kb on - strand, within SMc01848at 2366.459 kb on + strand, within SMc01848at 2366.460 kb on - strand, within SMc01848at 2366.519 kb on + strand, within SMc01848at 2366.520 kb on - strand, within SMc01848at 2366.834 kb on + strand, within SMc01848at 2366.834 kb on + strand, within SMc01848at 2366.835 kb on - strand, within SMc01848at 2366.897 kb on + strand, within SMc01848at 2366.897 kb on + strand, within SMc01848at 2366.898 kb on - strand, within SMc01848at 2367.012 kb on - strand, within SMc01848at 2367.012 kb on - strand, within SMc01848at 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.231 kb on - strandat 2367.317 kb on - strandat 2367.317 kb on - strandat 2367.338 kb on - strand, within SMc01847at 2367.358 kb on + strand, within SMc01847at 2367.498 kb on + strand, within SMc01847at 2367.499 kb on - strand, within SMc01847at 2367.890 kb on - strandat 2367.890 kb on - strandat 2367.926 kb on - strandat 2367.972 kb on - strandat 2367.991 kb on + strandat 2367.991 kb on + strandat 2367.991 kb on + strandat 2368.374 kb on + strand, within SMc01846at 2368.374 kb on + strand, within SMc01846at 2368.375 kb on - strand, within SMc01846at 2368.614 kb on + strand, within SMc01846at 2368.635 kb on + strand, within SMc01846at 2368.635 kb on + strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.687 kb on - strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.732 kb on - strand, within SMc01846at 2368.761 kb on + strand, within SMc01846at 2368.761 kb on + strand, within SMc01846at 2368.762 kb on - strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.764 kb on - strand, within SMc01846at 2368.764 kb on - strand, within SMc01846at 2368.872 kb on + strandat 2368.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,366,415 - SMc01848 0.32 -0.2
2,366,459 + SMc01848 0.35 +0.1
2,366,460 - SMc01848 0.36 +1.3
2,366,519 + SMc01848 0.40 -0.1
2,366,520 - SMc01848 0.40 +1.4
2,366,834 + SMc01848 0.65 -0.5
2,366,834 + SMc01848 0.65 +0.4
2,366,835 - SMc01848 0.66 +0.2
2,366,897 + SMc01848 0.71 -0.3
2,366,897 + SMc01848 0.71 -0.1
2,366,898 - SMc01848 0.71 -0.9
2,367,012 - SMc01848 0.80 -1.1
2,367,012 - SMc01848 0.80 -0.1
2,367,179 + -0.1
2,367,179 + -0.3
2,367,179 + -0.9
2,367,179 + +0.5
2,367,179 + -1.3
2,367,179 + +0.3
2,367,179 + -0.5
2,367,180 - -0.8
2,367,180 - +0.6
2,367,180 - -5.5
2,367,180 - -1.1
2,367,180 - +0.5
2,367,180 - +0.7
2,367,231 - -0.3
2,367,317 - +0.1
2,367,317 - -0.5
2,367,338 - SMc01847 0.11 +0.4
2,367,358 + SMc01847 0.14 -0.0
2,367,498 + SMc01847 0.35 +0.2
2,367,499 - SMc01847 0.36 +0.5
2,367,890 - -0.2
2,367,890 - +0.0
2,367,926 - -0.7
2,367,972 - +0.1
2,367,991 + +0.4
2,367,991 + +0.4
2,367,991 + -0.1
2,368,374 + SMc01846 0.36 -0.3
2,368,374 + SMc01846 0.36 -1.2
2,368,375 - SMc01846 0.36 +0.4
2,368,614 + SMc01846 0.67 +0.2
2,368,635 + SMc01846 0.69 -0.2
2,368,635 + SMc01846 0.69 +0.5
2,368,636 - SMc01846 0.70 -0.6
2,368,636 - SMc01846 0.70 -0.2
2,368,636 - SMc01846 0.70 +0.7
2,368,687 - SMc01846 0.76 +0.2
2,368,731 + SMc01846 0.82 +0.5
2,368,731 + SMc01846 0.82 +1.6
2,368,731 + SMc01846 0.82 +1.3
2,368,731 + SMc01846 0.82 +0.3
2,368,732 - SMc01846 0.82 +0.2
2,368,761 + SMc01846 0.85 +0.2
2,368,761 + SMc01846 0.85 -0.5
2,368,762 - SMc01846 0.86 +0.8
2,368,763 + SMc01846 0.86 +0.7
2,368,763 + SMc01846 0.86 +0.4
2,368,763 + SMc01846 0.86 +0.3
2,368,764 - SMc01846 0.86 +0.1
2,368,764 - SMc01846 0.86 +0.5
2,368,872 + +0.1
2,368,920 + +0.2

Or see this region's nucleotide sequence