Strain Fitness in Sinorhizobium meliloti 1021 around SMc01803

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01802 and SMc01803 are separated by 154 nucleotidesSMc01803 and SMc01804 are separated by 2 nucleotidesSMc01804 and SMc01805 are separated by 218 nucleotides SMc01802: SMc01802 - agmatinase, at 1,349,168 to 1,350,124 SMc01802 SMc01803: SMc01803 - 30S ribosomal protein S9, at 1,350,279 to 1,350,746 SMc01803 SMc01804: SMc01804 - 50S ribosomal protein L13, at 1,350,749 to 1,351,213 SMc01804 SMc01805: SMc01805 - hypothetical protein, at 1,351,432 to 1,351,863 SMc01805 Position (kb) 1350 1351Strain fitness (log2 ratio) -2 -1 0 1at 1349.300 kb on - strand, within SMc01802at 1349.333 kb on + strand, within SMc01802at 1349.334 kb on - strand, within SMc01802at 1349.334 kb on - strand, within SMc01802at 1349.334 kb on - strand, within SMc01802at 1349.334 kb on - strand, within SMc01802at 1349.422 kb on - strand, within SMc01802at 1349.456 kb on - strand, within SMc01802at 1349.712 kb on + strand, within SMc01802at 1349.713 kb on - strand, within SMc01802at 1349.713 kb on - strand, within SMc01802at 1349.713 kb on - strand, within SMc01802at 1349.713 kb on - strand, within SMc01802at 1349.749 kb on - strand, within SMc01802at 1349.818 kb on - strand, within SMc01802at 1350.021 kb on + strand, within SMc01802at 1351.498 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.551 kb on + strand, within SMc01805at 1351.552 kb on - strand, within SMc01805at 1351.633 kb on - strand, within SMc01805at 1351.651 kb on - strand, within SMc01805at 1351.653 kb on - strand, within SMc01805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,349,300 - SMc01802 0.14 -0.1
1,349,333 + SMc01802 0.17 -0.3
1,349,334 - SMc01802 0.17 +0.5
1,349,334 - SMc01802 0.17 +1.0
1,349,334 - SMc01802 0.17 -0.1
1,349,334 - SMc01802 0.17 -1.2
1,349,422 - SMc01802 0.27 -0.2
1,349,456 - SMc01802 0.30 +0.5
1,349,712 + SMc01802 0.57 +0.6
1,349,713 - SMc01802 0.57 +0.7
1,349,713 - SMc01802 0.57 -0.4
1,349,713 - SMc01802 0.57 -0.7
1,349,713 - SMc01802 0.57 +0.4
1,349,749 - SMc01802 0.61 +0.6
1,349,818 - SMc01802 0.68 +0.7
1,350,021 + SMc01802 0.89 -0.3
1,351,498 + SMc01805 0.15 -1.9
1,351,551 + SMc01805 0.28 -0.1
1,351,551 + SMc01805 0.28 +0.7
1,351,551 + SMc01805 0.28 -0.5
1,351,552 - SMc01805 0.28 +0.0
1,351,633 - SMc01805 0.47 -0.2
1,351,651 - SMc01805 0.51 +0.1
1,351,653 - SMc01805 0.51 +0.2

Or see this region's nucleotide sequence