Strain Fitness in Sinorhizobium meliloti 1021 around SMc01765

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01763 and SMc01764 are separated by 3 nucleotidesSMc01764 and SMc01765 are separated by 95 nucleotidesSMc01765 and SMc01766 are separated by 82 nucleotides SMc01763: SMc01763 - hypothetical protein, at 1,310,357 to 1,311,262 SMc01763 SMc01764: SMc01764 - arginyl-tRNA-protein transferase, at 1,311,266 to 1,312,045 SMc01764 SMc01765: SMc01765 - hypothetical protein, at 1,312,141 to 1,312,605 SMc01765 SMc01766: SMc01766 - delta-aminolevulinic acid dehydratase, at 1,312,688 to 1,313,830 SMc01766 Position (kb) 1312 1313Strain fitness (log2 ratio) -2 -1 0 1 2at 1311.358 kb on + strand, within SMc01764at 1311.358 kb on + strand, within SMc01764at 1311.358 kb on + strand, within SMc01764at 1311.358 kb on + strand, within SMc01764at 1311.358 kb on + strand, within SMc01764at 1311.358 kb on + strand, within SMc01764at 1311.359 kb on - strand, within SMc01764at 1311.360 kb on + strand, within SMc01764at 1311.360 kb on + strand, within SMc01764at 1311.361 kb on - strand, within SMc01764at 1311.391 kb on - strand, within SMc01764at 1311.400 kb on - strand, within SMc01764at 1311.453 kb on + strand, within SMc01764at 1311.453 kb on + strand, within SMc01764at 1311.454 kb on - strand, within SMc01764at 1311.498 kb on + strand, within SMc01764at 1311.498 kb on + strand, within SMc01764at 1311.499 kb on - strand, within SMc01764at 1311.499 kb on - strand, within SMc01764at 1311.601 kb on - strand, within SMc01764at 1311.621 kb on - strandat 1311.621 kb on - strand, within SMc01764at 1311.648 kb on + strand, within SMc01764at 1311.648 kb on + strand, within SMc01764at 1311.720 kb on + strand, within SMc01764at 1311.721 kb on - strand, within SMc01764at 1311.721 kb on - strand, within SMc01764at 1311.825 kb on - strand, within SMc01764at 1311.825 kb on - strand, within SMc01764at 1311.946 kb on + strand, within SMc01764at 1311.947 kb on - strand, within SMc01764at 1311.956 kb on + strand, within SMc01764at 1312.083 kb on + strandat 1312.086 kb on + strandat 1312.086 kb on + strandat 1312.131 kb on - strandat 1312.145 kb on + strandat 1312.145 kb on + strandat 1312.145 kb on + strandat 1312.146 kb on - strandat 1312.146 kb on - strandat 1312.146 kb on - strandat 1312.264 kb on + strand, within SMc01765at 1312.508 kb on + strand, within SMc01765at 1312.509 kb on - strand, within SMc01765at 1312.593 kb on + strandat 1312.593 kb on + strandat 1312.593 kb on + strandat 1312.593 kb on + strandat 1312.593 kb on + strandat 1312.593 kb on + strandat 1312.624 kb on + strandat 1312.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,311,358 + SMc01764 0.12 +0.3
1,311,358 + SMc01764 0.12 +0.3
1,311,358 + SMc01764 0.12 -0.3
1,311,358 + SMc01764 0.12 -1.2
1,311,358 + SMc01764 0.12 -2.3
1,311,358 + SMc01764 0.12 +0.2
1,311,359 - SMc01764 0.12 -0.2
1,311,360 + SMc01764 0.12 +0.5
1,311,360 + SMc01764 0.12 +0.1
1,311,361 - SMc01764 0.12 -1.0
1,311,391 - SMc01764 0.16 -0.3
1,311,400 - SMc01764 0.17 +0.3
1,311,453 + SMc01764 0.24 +1.7
1,311,453 + SMc01764 0.24 -1.1
1,311,454 - SMc01764 0.24 +0.1
1,311,498 + SMc01764 0.30 -0.2
1,311,498 + SMc01764 0.30 +0.0
1,311,499 - SMc01764 0.30 -0.7
1,311,499 - SMc01764 0.30 -1.3
1,311,601 - SMc01764 0.43 -0.4
1,311,621 - +0.3
1,311,621 - SMc01764 0.46 +0.1
1,311,648 + SMc01764 0.49 -0.9
1,311,648 + SMc01764 0.49 -1.2
1,311,720 + SMc01764 0.58 -1.5
1,311,721 - SMc01764 0.58 -0.4
1,311,721 - SMc01764 0.58 -0.6
1,311,825 - SMc01764 0.72 -0.9
1,311,825 - SMc01764 0.72 +0.1
1,311,946 + SMc01764 0.87 +0.1
1,311,947 - SMc01764 0.87 +0.5
1,311,956 + SMc01764 0.88 +0.0
1,312,083 + -2.1
1,312,086 + +2.3
1,312,086 + +0.0
1,312,131 - -1.6
1,312,145 + -0.9
1,312,145 + +0.4
1,312,145 + +0.7
1,312,146 - -0.8
1,312,146 - +0.7
1,312,146 - +0.4
1,312,264 + SMc01765 0.26 +1.7
1,312,508 + SMc01765 0.79 +1.3
1,312,509 - SMc01765 0.79 +1.0
1,312,593 + -0.8
1,312,593 + +0.0
1,312,593 + +0.7
1,312,593 + +0.0
1,312,593 + +0.8
1,312,593 + +0.1
1,312,624 + +0.7
1,312,655 + +0.3

Or see this region's nucleotide sequence