Strain Fitness in Sinorhizobium meliloti 1021 around SMc01615

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01613 and SMc01614 are separated by 37 nucleotidesSMc01614 and SMc01615 overlap by 4 nucleotidesSMc01615 and SMc01616 are separated by 93 nucleotides SMc01613: SMc01613 - ribose-5-phosphate isomerase B, at 2,404,360 to 2,404,797 SMc01613 SMc01614: SMc01614 - triosephosphate isomerase, at 2,404,835 to 2,405,602 SMc01614 SMc01615: SMc01615 - transcriptional regulator, at 2,405,599 to 2,406,384 SMc01615 SMc01616: SMc01616 - D-erythrulose-1-phosphate dehydrogenase, at 2,406,478 to 2,407,416 SMc01616 Position (kb) 2405 2406 2407Strain fitness (log2 ratio) -1 0 1 2at 2404.623 kb on + strand, within SMc01613at 2404.682 kb on + strand, within SMc01613at 2404.682 kb on + strand, within SMc01613at 2404.683 kb on - strand, within SMc01613at 2404.813 kb on + strandat 2404.971 kb on + strand, within SMc01614at 2405.044 kb on - strand, within SMc01614at 2405.044 kb on - strand, within SMc01614at 2405.060 kb on + strand, within SMc01614at 2405.094 kb on + strand, within SMc01614at 2405.174 kb on - strand, within SMc01614at 2405.615 kb on - strandat 2405.778 kb on - strand, within SMc01615at 2405.778 kb on - strand, within SMc01615at 2405.952 kb on - strand, within SMc01615at 2406.046 kb on - strand, within SMc01615at 2406.439 kb on + strandat 2406.440 kb on - strandat 2406.683 kb on + strand, within SMc01616at 2406.683 kb on + strand, within SMc01616at 2406.683 kb on + strand, within SMc01616at 2406.779 kb on + strand, within SMc01616at 2406.780 kb on - strand, within SMc01616at 2406.950 kb on + strand, within SMc01616at 2406.950 kb on + strand, within SMc01616at 2406.950 kb on + strand, within SMc01616at 2406.950 kb on + strand, within SMc01616at 2406.950 kb on + strand, within SMc01616at 2406.951 kb on - strand, within SMc01616at 2406.951 kb on - strand, within SMc01616at 2406.951 kb on - strand, within SMc01616at 2407.043 kb on + strand, within SMc01616at 2407.107 kb on + strand, within SMc01616at 2407.136 kb on + strand, within SMc01616at 2407.136 kb on + strand, within SMc01616at 2407.136 kb on + strand, within SMc01616at 2407.137 kb on - strand, within SMc01616at 2407.137 kb on - strand, within SMc01616at 2407.137 kb on - strand, within SMc01616at 2407.137 kb on - strand, within SMc01616at 2407.140 kb on - strand, within SMc01616at 2407.140 kb on - strand, within SMc01616at 2407.188 kb on - strand, within SMc01616at 2407.188 kb on - strand, within SMc01616at 2407.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,404,623 + SMc01613 0.60 -0.4
2,404,682 + SMc01613 0.74 -0.4
2,404,682 + SMc01613 0.74 +0.3
2,404,683 - SMc01613 0.74 -0.3
2,404,813 + -1.6
2,404,971 + SMc01614 0.18 -1.2
2,405,044 - SMc01614 0.27 -0.2
2,405,044 - SMc01614 0.27 -0.4
2,405,060 + SMc01614 0.29 +0.2
2,405,094 + SMc01614 0.34 -1.3
2,405,174 - SMc01614 0.44 -0.6
2,405,615 - -1.3
2,405,778 - SMc01615 0.23 -0.2
2,405,778 - SMc01615 0.23 +0.0
2,405,952 - SMc01615 0.45 +2.0
2,406,046 - SMc01615 0.57 +0.5
2,406,439 + +1.9
2,406,440 - +0.0
2,406,683 + SMc01616 0.22 -1.4
2,406,683 + SMc01616 0.22 -0.0
2,406,683 + SMc01616 0.22 -0.0
2,406,779 + SMc01616 0.32 -1.7
2,406,780 - SMc01616 0.32 -0.3
2,406,950 + SMc01616 0.50 +0.2
2,406,950 + SMc01616 0.50 +0.2
2,406,950 + SMc01616 0.50 -0.4
2,406,950 + SMc01616 0.50 -1.1
2,406,950 + SMc01616 0.50 -0.3
2,406,951 - SMc01616 0.50 +0.2
2,406,951 - SMc01616 0.50 +0.5
2,406,951 - SMc01616 0.50 -0.6
2,407,043 + SMc01616 0.60 -0.3
2,407,107 + SMc01616 0.67 +0.0
2,407,136 + SMc01616 0.70 +0.9
2,407,136 + SMc01616 0.70 -0.4
2,407,136 + SMc01616 0.70 -0.5
2,407,137 - SMc01616 0.70 +0.3
2,407,137 - SMc01616 0.70 +0.0
2,407,137 - SMc01616 0.70 -0.6
2,407,137 - SMc01616 0.70 +0.5
2,407,140 - SMc01616 0.71 +0.1
2,407,140 - SMc01616 0.71 +1.3
2,407,188 - SMc01616 0.76 -0.3
2,407,188 - SMc01616 0.76 -0.0
2,407,345 - +0.6

Or see this region's nucleotide sequence