Strain Fitness in Sinorhizobium meliloti 1021 around SMc01153

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01154 and SMc01153 are separated by 57 nucleotidesSMc01153 and SMc01152 are separated by 191 nucleotides SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115 SMc01154 SMc01153: SMc01153 - enoyl-CoA hydratase, at 397,173 to 397,946 SMc01153 SMc01152: SMc01152 - 30S ribosomal protein S20, at 398,138 to 398,404 SMc01152 Position (kb) 397 398Strain fitness (log2 ratio) -1 0 1at 396.187 kb on + strandat 396.188 kb on - strandat 396.385 kb on - strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.589 kb on - strand, within SMc01154at 396.589 kb on - strand, within SMc01154at 396.788 kb on + strand, within SMc01154at 396.788 kb on + strand, within SMc01154at 396.789 kb on - strand, within SMc01154at 396.792 kb on + strand, within SMc01154at 397.009 kb on - strand, within SMc01154at 397.066 kb on + strandat 397.066 kb on + strandat 397.067 kb on - strandat 397.067 kb on - strandat 397.070 kb on - strandat 397.070 kb on - strandat 397.070 kb on - strandat 397.092 kb on + strandat 397.180 kb on - strandat 397.568 kb on + strand, within SMc01153at 397.569 kb on - strand, within SMc01153at 398.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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396,187 + -0.4
396,188 - -0.1
396,385 - SMc01154 0.19 +0.5
396,588 + SMc01154 0.42 +0.1
396,588 + SMc01154 0.42 -0.2
396,588 + SMc01154 0.42 -0.3
396,589 - SMc01154 0.42 -0.7
396,589 - SMc01154 0.42 -0.6
396,788 + SMc01154 0.64 +0.4
396,788 + SMc01154 0.64 +0.1
396,789 - SMc01154 0.64 -0.5
396,792 + SMc01154 0.64 +0.1
397,009 - SMc01154 0.88 +1.6
397,066 + -0.0
397,066 + -0.9
397,067 - +0.4
397,067 - +0.6
397,070 - +0.4
397,070 - +0.0
397,070 - -0.6
397,092 + -0.5
397,180 - -0.7
397,568 + SMc01153 0.51 +0.8
397,569 - SMc01153 0.51 +0.1
398,932 + -0.5

Or see this region's nucleotide sequence