Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00906 and SMc00905 are separated by 43 nucleotides SMc00905 and SMc00904 are separated by 74 nucleotides SMc00904 and SMc00902 are separated by 6 nucleotides SMc00902 and SMc00930 are separated by 72 nucleotides
SMc00906: SMc00906 - acetyltransferase, at 878,408 to 878,887
SMc00906
SMc00905: SMc00905 - deaminase, at 878,931 to 879,380
SMc00905
SMc00904: SMc00904 - hypothetical protein, at 879,455 to 881,176
SMc00904
SMc00902: SMc00902 - hypothetical protein, at 881,183 to 881,743
SMc00902
SMc00930: SMc00930 - hypothetical protein, at 881,816 to 882,715
SMc00930
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.615 kb on + strand, within SMc00906 at 878.615 kb on + strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.616 kb on - strand, within SMc00906 at 878.621 kb on + strand, within SMc00906 at 878.621 kb on + strand, within SMc00906 at 878.622 kb on - strand, within SMc00906 at 878.622 kb on - strand, within SMc00906 at 878.652 kb on - strand, within SMc00906 at 878.652 kb on - strand, within SMc00906 at 878.666 kb on + strand, within SMc00906 at 878.801 kb on + strand, within SMc00906 at 878.801 kb on + strand, within SMc00906 at 878.802 kb on - strand, within SMc00906 at 878.933 kb on - strand at 878.933 kb on - strand at 879.415 kb on + strand at 879.426 kb on - strand at 879.426 kb on - strand at 879.680 kb on - strand, within SMc00904 at 879.785 kb on + strand, within SMc00904 at 879.785 kb on + strand, within SMc00904 at 880.211 kb on + strand, within SMc00904 at 880.211 kb on + strand, within SMc00904 at 880.211 kb on + strand, within SMc00904 at 880.211 kb on + strand, within SMc00904 at 880.287 kb on + strand, within SMc00904 at 880.287 kb on + strand, within SMc00904 at 880.337 kb on + strand, within SMc00904 at 880.338 kb on - strand, within SMc00904 at 880.338 kb on - strand, within SMc00904 at 880.339 kb on + strand, within SMc00904 at 880.340 kb on - strand, within SMc00904 at 881.174 kb on + strand at 881.174 kb on + strand at 881.555 kb on + strand, within SMc00902 at 881.844 kb on + strand at 881.844 kb on + strand at 881.844 kb on + strand at 881.844 kb on + strand at 881.845 kb on - strand at 882.102 kb on + strand, within SMc00930 at 882.169 kb on + strand, within SMc00930 at 882.169 kb on + strand, within SMc00930 at 882.170 kb on - strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.171 kb on + strand, within SMc00930 at 882.172 kb on - strand, within SMc00930
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 878,615 + SMc00906 0.43 -0.1 878,615 + SMc00906 0.43 -0.1 878,616 - SMc00906 0.43 +0.4 878,616 - SMc00906 0.43 -0.0 878,616 - SMc00906 0.43 -0.1 878,621 + SMc00906 0.44 -0.9 878,621 + SMc00906 0.44 -0.3 878,622 - SMc00906 0.45 -0.3 878,622 - SMc00906 0.45 -0.4 878,652 - SMc00906 0.51 -0.2 878,652 - SMc00906 0.51 +0.2 878,666 + SMc00906 0.54 +0.5 878,801 + SMc00906 0.82 -0.2 878,801 + SMc00906 0.82 +0.3 878,802 - SMc00906 0.82 +0.2 878,933 - -0.3 878,933 - -0.2 879,415 + -1.0 879,426 - -0.1 879,426 - -0.2 879,680 - SMc00904 0.13 -0.0 879,785 + SMc00904 0.19 +0.7 879,785 + SMc00904 0.19 +0.8 880,211 + SMc00904 0.44 +0.8 880,211 + SMc00904 0.44 +1.2 880,211 + SMc00904 0.44 +0.1 880,211 + SMc00904 0.44 +0.2 880,287 + SMc00904 0.48 +0.4 880,287 + SMc00904 0.48 +0.2 880,337 + SMc00904 0.51 -0.4 880,338 - SMc00904 0.51 +0.8 880,338 - SMc00904 0.51 +0.2 880,339 + SMc00904 0.51 -0.1 880,340 - SMc00904 0.51 +0.5 881,174 + -1.8 881,174 + +0.6 881,555 + SMc00902 0.66 -0.3 881,844 + -3.1 881,844 + -0.3 881,844 + -0.1 881,844 + -0.7 881,845 - -0.5 882,102 + SMc00930 0.32 +0.3 882,169 + SMc00930 0.39 +0.6 882,169 + SMc00930 0.39 +0.2 882,170 - SMc00930 0.39 +0.9 882,171 + SMc00930 0.39 +0.7 882,171 + SMc00930 0.39 -0.6 882,171 + SMc00930 0.39 +0.7 882,172 - SMc00930 0.40 +0.8
Or see this region's nucleotide sequence