Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00564 and SMc00565 are separated by 246 nucleotides SMc00565 and SMc00566 are separated by 35 nucleotides SMc00566 and SMc00567 are separated by 193 nucleotides SMc00567 and SMc00568 are separated by 25 nucleotides
SMc00564: SMc00564 - transporter, at 1,234,773 to 1,235,861
SMc00564
SMc00565: SMc00565 - 50S ribosomal protein L9, at 1,236,108 to 1,236,683
SMc00565
SMc00566: SMc00566 - hypothetical protein, at 1,236,719 to 1,237,672
SMc00566
SMc00567: SMc00567 - 30S ribosomal protein S18, at 1,237,866 to 1,238,114
SMc00567
SMc00568: SMc00568 - 30S ribosomal protein S6, at 1,238,140 to 1,238,589
SMc00568
Position (kb)
1236
1237
1238 Strain fitness (log2 ratio)
-1
0
1
2 at 1235.868 kb on - strand at 1236.030 kb on + strand at 1236.109 kb on + strand at 1236.110 kb on - strand at 1236.110 kb on - strand at 1236.185 kb on - strand, within SMc00565 at 1236.823 kb on - strand, within SMc00566 at 1237.059 kb on - strand, within SMc00566 at 1237.064 kb on + strand, within SMc00566 at 1237.087 kb on - strand, within SMc00566 at 1237.087 kb on - strand, within SMc00566 at 1237.270 kb on - strand, within SMc00566 at 1237.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,235,868 - -0.1 1,236,030 + -0.1 1,236,109 + +1.8 1,236,110 - +0.9 1,236,110 - +0.9 1,236,185 - SMc00565 0.13 +0.4 1,236,823 - SMc00566 0.11 -0.1 1,237,059 - SMc00566 0.36 +1.4 1,237,064 + SMc00566 0.36 +1.4 1,237,087 - SMc00566 0.39 +0.5 1,237,087 - SMc00566 0.39 +0.9 1,237,270 - SMc00566 0.58 +1.7 1,237,867 + +0.5
Or see this region's nucleotide sequence