Strain Fitness in Sinorhizobium meliloti 1021 around SMc00566

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00564 and SMc00565 are separated by 246 nucleotidesSMc00565 and SMc00566 are separated by 35 nucleotidesSMc00566 and SMc00567 are separated by 193 nucleotidesSMc00567 and SMc00568 are separated by 25 nucleotides SMc00564: SMc00564 - transporter, at 1,234,773 to 1,235,861 SMc00564 SMc00565: SMc00565 - 50S ribosomal protein L9, at 1,236,108 to 1,236,683 SMc00565 SMc00566: SMc00566 - hypothetical protein, at 1,236,719 to 1,237,672 SMc00566 SMc00567: SMc00567 - 30S ribosomal protein S18, at 1,237,866 to 1,238,114 SMc00567 SMc00568: SMc00568 - 30S ribosomal protein S6, at 1,238,140 to 1,238,589 SMc00568 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -1 0 1 2at 1235.868 kb on - strandat 1236.030 kb on + strandat 1236.109 kb on + strandat 1236.110 kb on - strandat 1236.110 kb on - strandat 1236.185 kb on - strand, within SMc00565at 1236.823 kb on - strand, within SMc00566at 1237.059 kb on - strand, within SMc00566at 1237.064 kb on + strand, within SMc00566at 1237.087 kb on - strand, within SMc00566at 1237.087 kb on - strand, within SMc00566at 1237.270 kb on - strand, within SMc00566at 1237.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,235,868 - -0.1
1,236,030 + -0.1
1,236,109 + +1.8
1,236,110 - +0.9
1,236,110 - +0.9
1,236,185 - SMc00565 0.13 +0.4
1,236,823 - SMc00566 0.11 -0.1
1,237,059 - SMc00566 0.36 +1.4
1,237,064 + SMc00566 0.36 +1.4
1,237,087 - SMc00566 0.39 +0.5
1,237,087 - SMc00566 0.39 +0.9
1,237,270 - SMc00566 0.58 +1.7
1,237,867 + +0.5

Or see this region's nucleotide sequence