Strain Fitness in Sinorhizobium meliloti 1021 around SMc00509

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00511 and SMc00510 overlap by 4 nucleotidesSMc00510 and SMc00509 overlap by 1 nucleotidesSMc00509 and SMc00508 are separated by 63 nucleotides SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549 SMc00511 SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283 SMc00510 SMc00509: SMc00509 - hypothetical protein, at 1,903,283 to 1,903,840 SMc00509 SMc00508: SMc00508 - adenylosuccinate lyase, at 1,903,904 to 1,905,211 SMc00508 Position (kb) 1903 1904Strain fitness (log2 ratio) -2 -1 0 1at 1902.618 kb on + strandat 1902.678 kb on + strand, within SMc00510at 1902.678 kb on + strand, within SMc00510at 1902.683 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.721 kb on - strand, within SMc00510at 1902.721 kb on - strand, within SMc00510at 1902.852 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.891 kb on - strand, within SMc00510at 1902.891 kb on - strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.972 kb on + strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.456 kb on + strand, within SMc00509at 1903.457 kb on - strand, within SMc00509at 1903.646 kb on + strand, within SMc00509at 1903.659 kb on - strand, within SMc00509at 1903.734 kb on - strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.767 kb on + strand, within SMc00509at 1903.768 kb on - strand, within SMc00509at 1903.792 kb on - strandat 1903.792 kb on - strandat 1903.860 kb on + strandat 1903.860 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,902,618 + +0.7
1,902,678 + SMc00510 0.18 -0.2
1,902,678 + SMc00510 0.18 -0.1
1,902,683 + SMc00510 0.19 +0.9
1,902,720 + SMc00510 0.24 -0.3
1,902,720 + SMc00510 0.24 +0.4
1,902,720 + SMc00510 0.24 -0.3
1,902,720 + SMc00510 0.24 +0.4
1,902,721 - SMc00510 0.24 -0.0
1,902,721 - SMc00510 0.24 -0.0
1,902,852 + SMc00510 0.41 +0.0
1,902,888 + SMc00510 0.46 -0.2
1,902,888 + SMc00510 0.46 +0.3
1,902,888 + SMc00510 0.46 -0.7
1,902,889 - SMc00510 0.46 +0.5
1,902,889 - SMc00510 0.46 -0.1
1,902,889 - SMc00510 0.46 -2.4
1,902,889 - SMc00510 0.46 -0.7
1,902,889 - SMc00510 0.46 +0.3
1,902,889 - SMc00510 0.46 +0.9
1,902,890 + SMc00510 0.47 -0.0
1,902,890 + SMc00510 0.47 -0.1
1,902,890 + SMc00510 0.47 -0.9
1,902,890 + SMc00510 0.47 -0.7
1,902,891 - SMc00510 0.47 +0.0
1,902,891 - SMc00510 0.47 -1.2
1,902,933 + SMc00510 0.52 -0.1
1,902,933 + SMc00510 0.52 +0.9
1,902,933 + SMc00510 0.52 -0.3
1,902,934 - SMc00510 0.53 -0.9
1,902,934 - SMc00510 0.53 -1.0
1,902,972 + SMc00510 0.58 -0.2
1,902,973 - SMc00510 0.58 -0.2
1,902,973 - SMc00510 0.58 -0.5
1,902,973 - SMc00510 0.58 -0.1
1,903,093 + SMc00510 0.74 -0.1
1,903,093 + SMc00510 0.74 -0.4
1,903,456 + SMc00509 0.31 -0.3
1,903,457 - SMc00509 0.31 -0.3
1,903,646 + SMc00509 0.65 -1.2
1,903,659 - SMc00509 0.67 -0.4
1,903,734 - SMc00509 0.81 -0.1
1,903,767 + SMc00509 0.87 -0.3
1,903,767 + SMc00509 0.87 -0.3
1,903,767 + SMc00509 0.87 -0.6
1,903,768 - SMc00509 0.87 +0.3
1,903,792 - -0.1
1,903,792 - -0.4
1,903,860 + +0.3
1,903,860 + +0.0

Or see this region's nucleotide sequence