Strain Fitness in Sinorhizobium meliloti 1021 around SMc00507

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00508 and SMc00507 are separated by 221 nucleotidesSMc00507 and SMc00506 are separated by 73 nucleotides SMc00508: SMc00508 - adenylosuccinate lyase, at 1,903,904 to 1,905,211 SMc00508 SMc00507: SMc00507 - hypothetical protein, at 1,905,433 to 1,905,771 SMc00507 SMc00506: SMc00506 - hypothetical protein, at 1,905,845 to 1,906,654 SMc00506 Position (kb) 1905 1906Strain fitness (log2 ratio) -1 0 1at 1905.214 kb on - strandat 1905.414 kb on + strandat 1905.415 kb on - strandat 1905.473 kb on - strand, within SMc00507at 1905.473 kb on - strand, within SMc00507at 1905.518 kb on + strand, within SMc00507at 1905.751 kb on + strandat 1905.752 kb on - strandat 1905.755 kb on - strandat 1905.755 kb on - strandat 1905.883 kb on - strandat 1906.196 kb on - strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.226 kb on + strand, within SMc00506at 1906.227 kb on - strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.228 kb on + strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.229 kb on - strand, within SMc00506at 1906.230 kb on + strand, within SMc00506at 1906.230 kb on + strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.231 kb on - strand, within SMc00506at 1906.383 kb on + strand, within SMc00506at 1906.500 kb on + strand, within SMc00506at 1906.501 kb on - strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.502 kb on + strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.503 kb on - strand, within SMc00506at 1906.599 kb on - strandat 1906.745 kb on + strandat 1906.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,905,214 - +0.5
1,905,414 + +0.2
1,905,415 - +0.2
1,905,473 - SMc00507 0.12 +0.8
1,905,473 - SMc00507 0.12 +0.6
1,905,518 + SMc00507 0.25 +0.1
1,905,751 + -0.5
1,905,752 - +0.7
1,905,755 - +0.4
1,905,755 - -0.4
1,905,883 - -0.1
1,906,196 - SMc00506 0.43 -0.3
1,906,226 + SMc00506 0.47 -0.2
1,906,226 + SMc00506 0.47 -0.7
1,906,226 + SMc00506 0.47 +0.8
1,906,227 - SMc00506 0.47 +0.2
1,906,228 + SMc00506 0.47 -0.3
1,906,228 + SMc00506 0.47 -0.7
1,906,228 + SMc00506 0.47 -0.0
1,906,228 + SMc00506 0.47 -0.3
1,906,229 - SMc00506 0.47 -0.2
1,906,229 - SMc00506 0.47 -0.2
1,906,229 - SMc00506 0.47 +0.9
1,906,230 + SMc00506 0.48 +0.0
1,906,230 + SMc00506 0.48 -0.3
1,906,231 - SMc00506 0.48 -0.3
1,906,231 - SMc00506 0.48 +0.0
1,906,231 - SMc00506 0.48 -0.9
1,906,231 - SMc00506 0.48 -1.2
1,906,383 + SMc00506 0.66 -0.2
1,906,500 + SMc00506 0.81 +0.4
1,906,501 - SMc00506 0.81 -0.5
1,906,502 + SMc00506 0.81 -0.9
1,906,502 + SMc00506 0.81 -0.1
1,906,502 + SMc00506 0.81 +0.3
1,906,502 + SMc00506 0.81 +0.5
1,906,502 + SMc00506 0.81 -0.5
1,906,503 - SMc00506 0.81 +0.2
1,906,503 - SMc00506 0.81 -0.6
1,906,503 - SMc00506 0.81 -0.3
1,906,599 - -0.0
1,906,745 + -1.2
1,906,745 + +0.7

Or see this region's nucleotide sequence