Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00347 and SMc00348 are separated by 398 nucleotides SMc00348 and SMc00349 are separated by 11 nucleotides SMc00349 and SMc00350 are separated by 58 nucleotides
SMc00347: SMc00347 - nucleoside diphosphate kinase regulator, at 302,529 to 302,936
SMc00347
SMc00348: SMc00348 - hypothetical protein, at 303,335 to 303,610
SMc00348
SMc00349: SMc00349 - GTP-binding protein LepA, at 303,622 to 305,448
SMc00349
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -1
0
1
2 at 302.755 kb on - strand, within SMc00347 at 302.942 kb on + strand at 302.942 kb on + strand at 302.943 kb on - strand at 302.943 kb on - strand at 303.000 kb on + strand at 303.001 kb on - strand at 303.046 kb on - strand at 303.049 kb on + strand at 303.049 kb on + strand at 303.137 kb on + strand at 303.137 kb on + strand at 303.336 kb on + strand at 303.336 kb on + strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.337 kb on - strand at 303.591 kb on + strand at 303.592 kb on - strand at 303.596 kb on + strand at 303.597 kb on - strand at 303.755 kb on + strand at 304.022 kb on + strand, within SMc00349 at 304.088 kb on + strand, within SMc00349 at 304.088 kb on + strand, within SMc00349 at 304.089 kb on - strand, within SMc00349 at 304.089 kb on - strand, within SMc00349 at 304.115 kb on + strand, within SMc00349 at 304.115 kb on + strand, within SMc00349 at 304.116 kb on - strand, within SMc00349 at 304.175 kb on + strand, within SMc00349 at 304.176 kb on - strand, within SMc00349 at 304.188 kb on + strand, within SMc00349 at 304.721 kb on + strand, within SMc00349 at 304.818 kb on - strand, within SMc00349 at 304.888 kb on - strand, within SMc00349 at 305.072 kb on + strand, within SMc00349 at 305.210 kb on + strand, within SMc00349 at 305.211 kb on - strand, within SMc00349 at 305.234 kb on + strand, within SMc00349 at 305.234 kb on + strand, within SMc00349 at 305.235 kb on - strand, within SMc00349 at 305.235 kb on - strand, within SMc00349 at 305.386 kb on - strand at 305.457 kb on + strand at 305.457 kb on + strand at 305.459 kb on + strand at 305.459 kb on + strand at 305.459 kb on + strand at 305.511 kb on - strand at 305.511 kb on - strand at 305.665 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.692 kb on - strand, within SMc00350 at 305.845 kb on - strand, within SMc00350 at 305.847 kb on + strand, within SMc00350 at 305.848 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.094 kb on - strand, within SMc00350 at 306.103 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.358 kb on - strand, within SMc00350
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 302,755 - SMc00347 0.55 -0.5 302,942 + -0.4 302,942 + -0.3 302,943 - -0.1 302,943 - -0.0 303,000 + +0.5 303,001 - -0.6 303,046 - -1.3 303,049 + +0.5 303,049 + +0.3 303,137 + +0.3 303,137 + -1.5 303,336 + -0.0 303,336 + +0.7 303,337 - +0.0 303,337 - +0.1 303,337 - -1.3 303,337 - -0.3 303,337 - -0.2 303,591 + +1.3 303,592 - -0.1 303,596 + -0.1 303,597 - -0.1 303,755 + +1.2 304,022 + SMc00349 0.22 +0.5 304,088 + SMc00349 0.26 +0.2 304,088 + SMc00349 0.26 -0.3 304,089 - SMc00349 0.26 +0.4 304,089 - SMc00349 0.26 +0.4 304,115 + SMc00349 0.27 -0.1 304,115 + SMc00349 0.27 +0.4 304,116 - SMc00349 0.27 -0.4 304,175 + SMc00349 0.30 +0.2 304,176 - SMc00349 0.30 +0.1 304,188 + SMc00349 0.31 +1.3 304,721 + SMc00349 0.60 +0.6 304,818 - SMc00349 0.65 +1.5 304,888 - SMc00349 0.69 +0.1 305,072 + SMc00349 0.79 +0.8 305,210 + SMc00349 0.87 +0.6 305,211 - SMc00349 0.87 +1.4 305,234 + SMc00349 0.88 +0.0 305,234 + SMc00349 0.88 +1.5 305,235 - SMc00349 0.88 -0.0 305,235 - SMc00349 0.88 +0.6 305,386 - +0.2 305,457 + +0.5 305,457 + +0.8 305,459 + -0.0 305,459 + +0.3 305,459 + +1.0 305,511 - +0.1 305,511 - +1.0 305,665 - SMc00350 0.12 +0.3 305,692 - SMc00350 0.15 -0.3 305,692 - SMc00350 0.15 -0.5 305,692 - SMc00350 0.15 +0.0 305,845 - SMc00350 0.27 -0.6 305,847 + SMc00350 0.27 -0.1 305,848 - SMc00350 0.27 +0.1 305,954 - SMc00350 0.35 -0.0 305,954 - SMc00350 0.35 -0.2 306,060 - SMc00350 0.44 -0.5 306,060 - SMc00350 0.44 -0.2 306,094 - SMc00350 0.46 +0.3 306,103 + SMc00350 0.47 -1.4 306,348 + SMc00350 0.66 -0.9 306,348 + SMc00350 0.66 +0.2 306,348 + SMc00350 0.66 +1.9 306,349 - SMc00350 0.67 -1.0 306,349 - SMc00350 0.67 -0.4 306,349 - SMc00350 0.67 +0.0 306,349 - SMc00350 0.67 +0.1 306,357 + SMc00350 0.67 -0.0 306,357 + SMc00350 0.67 -1.0 306,358 - SMc00350 0.67 -0.2 306,358 - SMc00350 0.67 +1.4
Or see this region's nucleotide sequence