Strain Fitness in Sinorhizobium meliloti 1021 around SMc00174

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00176 and SMc00175 are separated by 84 nucleotidesSMc00175 and SMc00174 are separated by 11 nucleotidesSMc00174 and SMc00459 are separated by 185 nucleotides SMc00176: SMc00176 - hypothetical protein, at 1,986,348 to 1,987,724 SMc00176 SMc00175: SMc00175 - ABC transporter ATP-binding protein, at 1,987,809 to 1,988,618 SMc00175 SMc00174: SMc00174 - hypothetical protein, at 1,988,630 to 1,989,769 SMc00174 SMc00459: SMc00459 - hypothetical protein, at 1,989,955 to 1,990,938 SMc00459 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1 2at 1987.699 kb on + strandat 1987.699 kb on + strandat 1987.725 kb on + strandat 1987.725 kb on + strandat 1987.725 kb on + strandat 1987.729 kb on + strandat 1987.730 kb on - strandat 1987.760 kb on - strandat 1987.782 kb on + strandat 1987.889 kb on + strandat 1987.889 kb on + strandat 1987.890 kb on - strand, within SMc00175at 1987.986 kb on - strand, within SMc00175at 1987.986 kb on - strand, within SMc00175at 1987.987 kb on + strand, within SMc00175at 1987.988 kb on - strand, within SMc00175at 1987.988 kb on - strand, within SMc00175at 1988.161 kb on + strand, within SMc00175at 1988.249 kb on - strand, within SMc00175at 1988.334 kb on - strand, within SMc00175at 1988.372 kb on - strand, within SMc00175at 1988.626 kb on + strandat 1988.650 kb on - strandat 1988.886 kb on + strand, within SMc00174at 1988.887 kb on - strand, within SMc00174at 1988.887 kb on - strand, within SMc00174at 1989.067 kb on + strand, within SMc00174at 1989.206 kb on + strand, within SMc00174at 1989.207 kb on - strand, within SMc00174at 1989.207 kb on - strand, within SMc00174at 1989.207 kb on - strand, within SMc00174at 1989.265 kb on + strand, within SMc00174at 1989.265 kb on + strand, within SMc00174at 1989.265 kb on + strand, within SMc00174at 1989.266 kb on - strand, within SMc00174at 1989.573 kb on + strand, within SMc00174at 1989.696 kb on + strandat 1989.696 kb on + strandat 1989.697 kb on - strandat 1989.697 kb on - strandat 1989.697 kb on - strandat 1989.697 kb on - strandat 1989.697 kb on - strandat 1989.802 kb on - strandat 1989.858 kb on - strandat 1989.858 kb on - strandat 1989.858 kb on - strandat 1989.954 kb on + strandat 1989.969 kb on + strandat 1989.969 kb on + strandat 1989.969 kb on + strandat 1989.970 kb on - strandat 1989.970 kb on - strandat 1990.100 kb on - strand, within SMc00459at 1990.325 kb on - strand, within SMc00459at 1990.586 kb on + strand, within SMc00459at 1990.586 kb on + strand, within SMc00459at 1990.611 kb on - strand, within SMc00459

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,987,699 + +0.6
1,987,699 + +0.3
1,987,725 + +0.2
1,987,725 + +0.1
1,987,725 + +0.5
1,987,729 + +0.8
1,987,730 - +0.0
1,987,760 - -0.4
1,987,782 + +0.0
1,987,889 + +0.5
1,987,889 + +0.8
1,987,890 - SMc00175 0.10 +0.6
1,987,986 - SMc00175 0.22 +0.2
1,987,986 - SMc00175 0.22 +0.4
1,987,987 + SMc00175 0.22 +0.7
1,987,988 - SMc00175 0.22 +0.3
1,987,988 - SMc00175 0.22 +0.8
1,988,161 + SMc00175 0.43 +0.1
1,988,249 - SMc00175 0.54 +0.3
1,988,334 - SMc00175 0.65 +0.4
1,988,372 - SMc00175 0.70 -0.0
1,988,626 + +0.4
1,988,650 - +0.3
1,988,886 + SMc00174 0.22 +0.6
1,988,887 - SMc00174 0.23 +0.2
1,988,887 - SMc00174 0.23 +0.8
1,989,067 + SMc00174 0.38 +1.0
1,989,206 + SMc00174 0.51 +0.7
1,989,207 - SMc00174 0.51 +0.4
1,989,207 - SMc00174 0.51 -1.8
1,989,207 - SMc00174 0.51 +1.2
1,989,265 + SMc00174 0.56 +0.2
1,989,265 + SMc00174 0.56 +0.5
1,989,265 + SMc00174 0.56 +0.3
1,989,266 - SMc00174 0.56 +0.9
1,989,573 + SMc00174 0.83 +0.5
1,989,696 + +0.8
1,989,696 + +0.2
1,989,697 - +1.0
1,989,697 - -0.0
1,989,697 - +2.3
1,989,697 - +0.3
1,989,697 - +0.6
1,989,802 - -0.4
1,989,858 - +0.5
1,989,858 - -0.3
1,989,858 - -0.1
1,989,954 + -0.1
1,989,969 + +0.6
1,989,969 + +0.7
1,989,969 + +2.2
1,989,970 - -0.7
1,989,970 - +1.1
1,990,100 - SMc00459 0.15 -0.2
1,990,325 - SMc00459 0.38 -0.1
1,990,586 + SMc00459 0.64 +0.4
1,990,586 + SMc00459 0.64 +0.2
1,990,611 - SMc00459 0.67 -0.5

Or see this region's nucleotide sequence