Strain Fitness in Sinorhizobium meliloti 1021 around SMc00061

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00060 and SMc00061 are separated by 71 nucleotidesSMc00061 and SMc00120 are separated by 243 nucleotides SMc00060: SMc00060 - hypothetical protein, at 1,095,117 to 1,096,076 SMc00060 SMc00061: SMc00061 - hypothetical protein, at 1,096,148 to 1,096,498 SMc00061 SMc00120: SMc00120 - hypothetical protein, at 1,096,742 to 1,097,797 SMc00120 Position (kb) 1096 1097Strain fitness (log2 ratio) -2 -1 0 1at 1095.315 kb on + strand, within SMc00060at 1095.446 kb on - strand, within SMc00060at 1095.446 kb on - strand, within SMc00060at 1095.446 kb on - strand, within SMc00060at 1095.446 kb on - strand, within SMc00060at 1095.529 kb on + strand, within SMc00060at 1095.529 kb on + strand, within SMc00060at 1095.529 kb on + strand, within SMc00060at 1095.529 kb on + strand, within SMc00060at 1095.530 kb on - strand, within SMc00060at 1095.530 kb on - strand, within SMc00060at 1095.609 kb on + strand, within SMc00060at 1095.610 kb on - strand, within SMc00060at 1095.610 kb on - strand, within SMc00060at 1096.311 kb on - strand, within SMc00061at 1096.351 kb on + strand, within SMc00061at 1096.351 kb on + strand, within SMc00061at 1096.352 kb on - strand, within SMc00061at 1096.453 kb on - strand, within SMc00061at 1096.496 kb on + strandat 1096.497 kb on - strandat 1096.497 kb on - strandat 1096.685 kb on - strandat 1096.708 kb on + strandat 1096.708 kb on + strandat 1096.728 kb on - strandat 1096.743 kb on + strandat 1096.744 kb on - strandat 1096.744 kb on - strandat 1096.744 kb on - strandat 1096.744 kb on - strandat 1096.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,095,315 + SMc00060 0.21 -1.5
1,095,446 - SMc00060 0.34 +0.3
1,095,446 - SMc00060 0.34 -0.7
1,095,446 - SMc00060 0.34 -1.7
1,095,446 - SMc00060 0.34 -2.2
1,095,529 + SMc00060 0.43 -0.8
1,095,529 + SMc00060 0.43 -0.2
1,095,529 + SMc00060 0.43 -0.4
1,095,529 + SMc00060 0.43 -0.6
1,095,530 - SMc00060 0.43 -0.4
1,095,530 - SMc00060 0.43 -0.1
1,095,609 + SMc00060 0.51 -0.5
1,095,610 - SMc00060 0.51 -1.4
1,095,610 - SMc00060 0.51 -0.9
1,096,311 - SMc00061 0.46 +0.8
1,096,351 + SMc00061 0.58 -0.2
1,096,351 + SMc00061 0.58 +0.5
1,096,352 - SMc00061 0.58 +0.3
1,096,453 - SMc00061 0.87 -0.4
1,096,496 + -0.1
1,096,497 - -0.3
1,096,497 - -0.1
1,096,685 - +0.6
1,096,708 + +0.4
1,096,708 + -0.2
1,096,728 - +0.7
1,096,743 + -0.5
1,096,744 - +0.1
1,096,744 - +0.8
1,096,744 - -0.2
1,096,744 - +0.5
1,096,744 - -0.4

Or see this region's nucleotide sequence