Strain Fitness in Sinorhizobium meliloti 1021 around SMc00019

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00073 and SMc00019 are separated by 92 nucleotidesSMc00019 and SMc00074 are separated by 157 nucleotides SMc00073: SMc00073 - hypothetical protein, at 1,002,130 to 1,003,068 SMc00073 SMc00019: SMc00019 - hypothetical protein, at 1,003,161 to 1,003,766 SMc00019 SMc00074: SMc00074 - transmembrane signal peptide protein, at 1,003,924 to 1,006,836 SMc00074 Position (kb) 1003 1004Strain fitness (log2 ratio) -2 -1 0 1at 1002.196 kb on - strandat 1002.534 kb on + strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.535 kb on - strand, within SMc00073at 1002.764 kb on + strand, within SMc00073at 1002.765 kb on - strand, within SMc00073at 1003.025 kb on - strandat 1003.041 kb on - strandat 1003.041 kb on - strandat 1003.147 kb on - strandat 1003.152 kb on - strandat 1003.152 kb on - strandat 1003.181 kb on + strandat 1003.182 kb on - strandat 1003.590 kb on + strand, within SMc00019at 1003.699 kb on - strand, within SMc00019

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,002,196 - -1.8
1,002,534 + SMc00073 0.43 +0.0
1,002,535 - SMc00073 0.43 -1.0
1,002,535 - SMc00073 0.43 -2.0
1,002,764 + SMc00073 0.68 -0.4
1,002,765 - SMc00073 0.68 -0.7
1,003,025 - +0.2
1,003,041 - -1.4
1,003,041 - +0.0
1,003,147 - -0.6
1,003,152 - -0.2
1,003,152 - -0.2
1,003,181 + -0.4
1,003,182 - -0.1
1,003,590 + SMc00019 0.71 +0.2
1,003,699 - SMc00019 0.89 +0.5

Or see this region's nucleotide sequence