Strain Fitness in Sinorhizobium meliloti 1021 around SMa2195

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2193 and SMa2195 are separated by 0 nucleotidesSMa2195 and SMa2197 are separated by 1 nucleotidesSMa2197 and SMa2199 are separated by 63 nucleotides SMa2193: SMa2193 - Oxidoreductase, at 1,228,832 to 1,230,145 SMa2193 SMa2195: SMa2195 - ABC transporter ATP-binding protein, at 1,230,146 to 1,230,910 SMa2195 SMa2197: SMa2197 - ABC transporter permease, at 1,230,912 to 1,231,826 SMa2197 SMa2199: SMa2199 - ABC transporter substrate-binding protein, at 1,231,890 to 1,232,780 SMa2199 Position (kb) 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2at 1229.183 kb on + strand, within SMa2193at 1229.183 kb on + strand, within SMa2193at 1229.225 kb on + strandat 1229.242 kb on - strand, within SMa2193at 1229.285 kb on - strand, within SMa2193at 1229.286 kb on + strand, within SMa2193at 1229.287 kb on - strand, within SMa2193at 1229.294 kb on + strand, within SMa2193at 1229.295 kb on - strand, within SMa2193at 1229.348 kb on + strand, within SMa2193at 1229.350 kb on + strand, within SMa2193at 1229.350 kb on + strand, within SMa2193at 1229.351 kb on - strand, within SMa2193at 1229.351 kb on - strand, within SMa2193at 1229.408 kb on + strand, within SMa2193at 1229.408 kb on + strand, within SMa2193at 1229.454 kb on - strand, within SMa2193at 1229.454 kb on - strand, within SMa2193at 1229.476 kb on - strand, within SMa2193at 1229.630 kb on + strand, within SMa2193at 1229.636 kb on + strand, within SMa2193at 1229.720 kb on - strand, within SMa2193at 1229.726 kb on - strand, within SMa2193at 1229.850 kb on - strand, within SMa2193at 1229.921 kb on + strand, within SMa2193at 1230.039 kb on - strandat 1230.044 kb on + strandat 1230.044 kb on + strandat 1230.045 kb on - strandat 1230.057 kb on + strandat 1230.057 kb on + strandat 1230.057 kb on + strandat 1230.057 kb on + strandat 1230.057 kb on + strandat 1230.058 kb on - strandat 1230.058 kb on - strandat 1230.094 kb on + strandat 1230.094 kb on + strandat 1230.244 kb on + strand, within SMa2195at 1230.404 kb on - strand, within SMa2195at 1230.472 kb on - strand, within SMa2195at 1230.802 kb on + strand, within SMa2195at 1230.808 kb on + strand, within SMa2195at 1230.879 kb on - strandat 1230.953 kb on + strandat 1231.088 kb on + strand, within SMa2197at 1231.088 kb on + strand, within SMa2197at 1231.089 kb on - strand, within SMa2197at 1231.206 kb on + strand, within SMa2197at 1231.206 kb on + strand, within SMa2197at 1231.313 kb on + strand, within SMa2197at 1231.314 kb on - strand, within SMa2197at 1231.314 kb on - strand, within SMa2197at 1231.314 kb on - strand, within SMa2197at 1231.315 kb on + strand, within SMa2197at 1231.315 kb on + strand, within SMa2197at 1231.315 kb on + strand, within SMa2197at 1231.315 kb on + strand, within SMa2197at 1231.315 kb on + strand, within SMa2197at 1231.316 kb on - strand, within SMa2197at 1231.316 kb on - strand, within SMa2197at 1231.316 kb on - strand, within SMa2197at 1231.570 kb on - strand, within SMa2197at 1231.648 kb on + strand, within SMa2197at 1231.649 kb on - strand, within SMa2197at 1231.659 kb on + strand, within SMa2197at 1231.705 kb on + strand, within SMa2197at 1231.713 kb on + strand, within SMa2197at 1231.768 kb on + strandat 1231.769 kb on - strandat 1231.769 kb on - strandat 1231.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,229,183 + SMa2193 0.27 -0.1
1,229,183 + SMa2193 0.27 +0.6
1,229,225 + -0.2
1,229,242 - SMa2193 0.31 +0.2
1,229,285 - SMa2193 0.34 +0.1
1,229,286 + SMa2193 0.35 +0.0
1,229,287 - SMa2193 0.35 +2.1
1,229,294 + SMa2193 0.35 -0.3
1,229,295 - SMa2193 0.35 -1.2
1,229,348 + SMa2193 0.39 +0.2
1,229,350 + SMa2193 0.39 +0.2
1,229,350 + SMa2193 0.39 -0.3
1,229,351 - SMa2193 0.39 -0.7
1,229,351 - SMa2193 0.39 -0.3
1,229,408 + SMa2193 0.44 -0.8
1,229,408 + SMa2193 0.44 +0.7
1,229,454 - SMa2193 0.47 +0.1
1,229,454 - SMa2193 0.47 +0.2
1,229,476 - SMa2193 0.49 +0.0
1,229,630 + SMa2193 0.61 -0.6
1,229,636 + SMa2193 0.61 +0.5
1,229,720 - SMa2193 0.68 -0.3
1,229,726 - SMa2193 0.68 -0.4
1,229,850 - SMa2193 0.77 -0.8
1,229,921 + SMa2193 0.83 -0.5
1,230,039 - +0.2
1,230,044 + +0.1
1,230,044 + -0.0
1,230,045 - -0.5
1,230,057 + +0.4
1,230,057 + +1.8
1,230,057 + -0.3
1,230,057 + -0.2
1,230,057 + -0.4
1,230,058 - -0.1
1,230,058 - -0.1
1,230,094 + -0.3
1,230,094 + +0.3
1,230,244 + SMa2195 0.13 -0.0
1,230,404 - SMa2195 0.34 -0.1
1,230,472 - SMa2195 0.43 +0.4
1,230,802 + SMa2195 0.86 +0.6
1,230,808 + SMa2195 0.87 +0.6
1,230,879 - -0.2
1,230,953 + -0.4
1,231,088 + SMa2197 0.19 -0.3
1,231,088 + SMa2197 0.19 +1.0
1,231,089 - SMa2197 0.19 -0.2
1,231,206 + SMa2197 0.32 -0.8
1,231,206 + SMa2197 0.32 +1.1
1,231,313 + SMa2197 0.44 -0.6
1,231,314 - SMa2197 0.44 +1.0
1,231,314 - SMa2197 0.44 +0.1
1,231,314 - SMa2197 0.44 +0.6
1,231,315 + SMa2197 0.44 -0.1
1,231,315 + SMa2197 0.44 -0.6
1,231,315 + SMa2197 0.44 +0.1
1,231,315 + SMa2197 0.44 +0.9
1,231,315 + SMa2197 0.44 +0.1
1,231,316 - SMa2197 0.44 -0.6
1,231,316 - SMa2197 0.44 +1.1
1,231,316 - SMa2197 0.44 -0.6
1,231,570 - SMa2197 0.72 +0.4
1,231,648 + SMa2197 0.80 -0.4
1,231,649 - SMa2197 0.81 -0.1
1,231,659 + SMa2197 0.82 +0.1
1,231,705 + SMa2197 0.87 +0.4
1,231,713 + SMa2197 0.88 +0.1
1,231,768 + -0.1
1,231,769 - +0.2
1,231,769 - +0.0
1,231,892 - -1.9

Or see this region's nucleotide sequence