Strain Fitness in Sinorhizobium meliloti 1021 around SMa2169

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2167 and SMa2168 are separated by 76 nucleotidesSMa2168 and SMa2169 are separated by 38 nucleotidesSMa2169 and SMa2171 are separated by 453 nucleotides SMa2167: SMa2167 - hypothetical protein, at 1,221,480 to 1,221,947 SMa2167 SMa2168: SMa2168 - tRNA-Met, at 1,222,024 to 1,222,096 SMa2168 SMa2169: SMa2169 - hypothetical protein, at 1,222,135 to 1,222,512 SMa2169 SMa2171: SMa2171 - Transposase, at 1,222,966 to 1,224,603 SMa2171 Position (kb) 1222 1223Strain fitness (log2 ratio) -2 -1 0 1 2at 1221.155 kb on + strandat 1221.155 kb on + strandat 1221.155 kb on + strandat 1221.163 kb on + strandat 1221.164 kb on - strandat 1221.237 kb on + strandat 1221.296 kb on - strandat 1221.300 kb on + strandat 1221.300 kb on + strandat 1221.321 kb on + strandat 1221.321 kb on + strandat 1221.322 kb on - strandat 1221.390 kb on + strandat 1221.442 kb on + strandat 1221.448 kb on + strandat 1221.448 kb on + strandat 1221.448 kb on + strandat 1221.449 kb on - strandat 1221.449 kb on - strandat 1221.449 kb on - strandat 1221.521 kb on + strandat 1221.521 kb on + strandat 1221.541 kb on + strand, within SMa2167at 1221.545 kb on + strand, within SMa2167at 1221.545 kb on + strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.624 kb on - strand, within SMa2167at 1221.629 kb on - strand, within SMa2167at 1221.629 kb on - strand, within SMa2167at 1221.629 kb on - strand, within SMa2167at 1221.775 kb on + strand, within SMa2167at 1221.850 kb on - strand, within SMa2167at 1222.032 kb on - strand, within SMa2168at 1222.032 kb on - strand, within SMa2168at 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.136 kb on + strandat 1222.137 kb on - strandat 1222.189 kb on + strand, within SMa2169at 1222.233 kb on - strand, within SMa2169at 1222.302 kb on + strand, within SMa2169at 1222.302 kb on + strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.309 kb on - strand, within SMa2169at 1222.551 kb on + strandat 1222.563 kb on + strandat 1222.564 kb on - strandat 1222.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,221,155 + -0.4
1,221,155 + -0.8
1,221,155 + -0.2
1,221,163 + -1.0
1,221,164 - -0.3
1,221,237 + -0.2
1,221,296 - +0.6
1,221,300 + -0.5
1,221,300 + +0.1
1,221,321 + +0.8
1,221,321 + -0.1
1,221,322 - -0.7
1,221,390 + +0.2
1,221,442 + +1.6
1,221,448 + +0.2
1,221,448 + +1.8
1,221,448 + -0.6
1,221,449 - +0.0
1,221,449 - -0.2
1,221,449 - -1.1
1,221,521 + +0.2
1,221,521 + -1.1
1,221,541 + SMa2167 0.13 -0.5
1,221,545 + SMa2167 0.14 +0.8
1,221,545 + SMa2167 0.14 -0.0
1,221,624 - SMa2167 0.31 -0.0
1,221,624 - SMa2167 0.31 -0.0
1,221,624 - SMa2167 0.31 -0.1
1,221,624 - SMa2167 0.31 +0.5
1,221,624 - SMa2167 0.31 +0.5
1,221,624 - SMa2167 0.31 +0.1
1,221,629 - SMa2167 0.32 -0.5
1,221,629 - SMa2167 0.32 +0.3
1,221,629 - SMa2167 0.32 -2.0
1,221,775 + SMa2167 0.63 -0.0
1,221,850 - SMa2167 0.79 -0.3
1,222,032 - SMa2168 0.11 +0.4
1,222,032 - SMa2168 0.11 -0.6
1,222,136 + -0.2
1,222,136 + +0.8
1,222,136 + -0.1
1,222,136 + -0.2
1,222,136 + -0.1
1,222,137 - -0.3
1,222,189 + SMa2169 0.14 -0.5
1,222,233 - SMa2169 0.26 +0.4
1,222,302 + SMa2169 0.44 +0.2
1,222,302 + SMa2169 0.44 +0.8
1,222,309 - SMa2169 0.46 +0.8
1,222,309 - SMa2169 0.46 +0.3
1,222,309 - SMa2169 0.46 +0.1
1,222,551 + -0.0
1,222,563 + -0.4
1,222,564 - -0.6
1,222,564 - +0.7

Or see this region's nucleotide sequence