Strain Fitness in Sinorhizobium meliloti 1021 around SMa1361

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1358 and SMa1361 are separated by 320 nucleotidesSMa1361 and SMa1362 are separated by 408 nucleotides SMa1358: SMa1358 - Lyase, at 744,913 to 745,287 SMa1358 SMa1361: SMa1361 - hypothetical protein, at 745,608 to 745,790 SMa1361 SMa1362: SMa1362 - inner-membrane permease, at 746,199 to 747,599 SMa1362 Position (kb) 745 746Strain fitness (log2 ratio) -2 -1 0 1 2at 744.617 kb on + strandat 744.620 kb on + strandat 744.860 kb on + strandat 744.860 kb on + strandat 744.860 kb on + strandat 744.861 kb on - strandat 744.873 kb on + strandat 744.874 kb on - strandat 744.896 kb on + strandat 744.896 kb on + strandat 744.897 kb on - strandat 744.897 kb on - strandat 744.946 kb on + strandat 744.995 kb on + strand, within SMa1358at 745.070 kb on - strand, within SMa1358at 745.070 kb on - strand, within SMa1358at 745.205 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.217 kb on - strand, within SMa1358at 745.219 kb on + strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.220 kb on - strand, within SMa1358at 745.325 kb on + strandat 745.325 kb on + strandat 745.325 kb on + strandat 745.325 kb on + strandat 745.326 kb on - strandat 745.326 kb on - strandat 745.326 kb on - strandat 745.467 kb on + strandat 745.563 kb on - strandat 745.581 kb on - strandat 745.591 kb on - strandat 745.609 kb on + strandat 745.610 kb on - strandat 745.729 kb on + strand, within SMa1361at 745.729 kb on + strand, within SMa1361at 745.730 kb on - strand, within SMa1361at 745.773 kb on - strandat 745.773 kb on - strandat 745.870 kb on + strandat 745.870 kb on + strandat 745.871 kb on - strandat 745.956 kb on + strandat 745.957 kb on - strandat 745.957 kb on - strandat 746.140 kb on - strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.200 kb on + strandat 746.340 kb on + strand, within SMa1362at 746.341 kb on - strand, within SMa1362at 746.487 kb on - strand, within SMa1362at 746.488 kb on + strand, within SMa1362at 746.488 kb on + strand, within SMa1362at 746.489 kb on - strand, within SMa1362at 746.535 kb on + strand, within SMa1362at 746.607 kb on + strand, within SMa1362at 746.607 kb on + strand, within SMa1362at 746.654 kb on - strand, within SMa1362

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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744,617 + +0.9
744,620 + -0.0
744,860 + -0.2
744,860 + -0.2
744,860 + -0.1
744,861 - -0.3
744,873 + -0.1
744,874 - -0.4
744,896 + -0.4
744,896 + +1.3
744,897 - +0.1
744,897 - -0.4
744,946 + +0.2
744,995 + SMa1358 0.22 +0.1
745,070 - SMa1358 0.42 -0.0
745,070 - SMa1358 0.42 +0.0
745,205 - SMa1358 0.78 -1.4
745,217 - SMa1358 0.81 -0.2
745,217 - SMa1358 0.81 -0.8
745,217 - SMa1358 0.81 -0.7
745,219 + SMa1358 0.82 -0.2
745,220 - SMa1358 0.82 -0.2
745,220 - SMa1358 0.82 +0.2
745,220 - SMa1358 0.82 -1.6
745,325 + +0.1
745,325 + +0.2
745,325 + +0.2
745,325 + -0.3
745,326 - -0.0
745,326 - -0.0
745,326 - -0.1
745,467 + -0.1
745,563 - +0.9
745,581 - -0.6
745,591 - -0.2
745,609 + -0.9
745,610 - -2.7
745,729 + SMa1361 0.66 -0.2
745,729 + SMa1361 0.66 +0.9
745,730 - SMa1361 0.67 +0.2
745,773 - +0.1
745,773 - -0.5
745,870 + +0.1
745,870 + +0.8
745,871 - -1.2
745,956 + +0.6
745,957 - +0.2
745,957 - -0.5
746,140 - +0.0
746,200 + +0.3
746,200 + -1.7
746,200 + -0.2
746,200 + +0.3
746,200 + +2.0
746,340 + SMa1362 0.10 +0.8
746,341 - SMa1362 0.10 -0.1
746,487 - SMa1362 0.21 -0.2
746,488 + SMa1362 0.21 -0.5
746,488 + SMa1362 0.21 +0.6
746,489 - SMa1362 0.21 -0.2
746,535 + SMa1362 0.24 +0.8
746,607 + SMa1362 0.29 +0.1
746,607 + SMa1362 0.29 -0.2
746,654 - SMa1362 0.32 -0.8

Or see this region's nucleotide sequence