Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20293

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20292 and SM_b20293 are separated by 311 nucleotidesSM_b20293 and SM_b20294 are separated by 131 nucleotidesSM_b20294 and SM_b20295 are separated by 28 nucleotides SM_b20292: SM_b20292 - immunogenic protein, at 299,408 to 300,391 _b20292 SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062 _b20293 SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895 _b20294 SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895 _b20295 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 299.770 kb on + strand, within SM_b20292at 299.797 kb on - strand, within SM_b20292at 300.008 kb on + strand, within SM_b20292at 300.103 kb on - strand, within SM_b20292at 300.258 kb on + strand, within SM_b20292at 300.262 kb on - strand, within SM_b20292at 300.374 kb on - strandat 300.374 kb on - strandat 300.394 kb on - strandat 300.394 kb on - strandat 300.440 kb on + strandat 300.441 kb on - strandat 300.528 kb on + strandat 300.528 kb on + strandat 300.529 kb on - strandat 300.560 kb on + strandat 300.560 kb on + strandat 300.561 kb on - strandat 300.586 kb on - strandat 300.713 kb on + strandat 300.714 kb on - strandat 300.718 kb on + strandat 300.752 kb on - strand, within SM_b20293at 300.849 kb on + strand, within SM_b20293at 301.060 kb on + strandat 301.061 kb on - strandat 301.061 kb on - strandat 301.273 kb on - strand, within SM_b20294at 301.357 kb on - strand, within SM_b20294at 301.871 kb on + strandat 301.872 kb on - strandat 301.872 kb on - strandat 301.876 kb on - strandat 301.907 kb on + strandat 302.022 kb on + strand, within SM_b20295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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299,770 + SM_b20292 0.37 -0.7
299,797 - SM_b20292 0.40 +0.5
300,008 + SM_b20292 0.61 -0.2
300,103 - SM_b20292 0.71 -0.2
300,258 + SM_b20292 0.86 +0.4
300,262 - SM_b20292 0.87 +0.0
300,374 - -0.8
300,374 - -2.3
300,394 - +0.1
300,394 - +0.1
300,440 + +0.7
300,441 - +0.7
300,528 + +0.5
300,528 + +0.0
300,529 - -0.6
300,560 + -0.6
300,560 + +0.5
300,561 - -0.2
300,586 - -0.2
300,713 + +0.2
300,714 - -0.9
300,718 + +0.3
300,752 - SM_b20293 0.14 -0.5
300,849 + SM_b20293 0.41 -1.0
301,060 + -0.9
301,061 - +0.1
301,061 - -0.5
301,273 - SM_b20294 0.11 -0.3
301,357 - SM_b20294 0.23 +0.0
301,871 + -0.7
301,872 - +0.1
301,872 - +0.7
301,876 - +0.2
301,907 + +1.9
302,022 + SM_b20295 0.10 -0.1

Or see this region's nucleotide sequence