Experiment: R2A with Nickel (II) chloride 0.35 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35105 and RR42_RS35110 are separated by 88 nucleotides RR42_RS35110 and RR42_RS35115 are separated by 152 nucleotides RR42_RS35115 and RR42_RS35120 are separated by 52 nucleotides
RR42_RS35105: RR42_RS35105 - hydrolase, at 3,328,330 to 3,329,418
_RS35105
RR42_RS35110: RR42_RS35110 - hypothetical protein, at 3,329,507 to 3,329,689
_RS35110
RR42_RS35115: RR42_RS35115 - riboflavin synthase subunit beta, at 3,329,842 to 3,330,312
_RS35115
RR42_RS35120: RR42_RS35120 - benzoyl-CoA oxygenase, at 3,330,365 to 3,331,645
_RS35120
Position (kb) 3329
3330
3331 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3328.962 kb on + strand, within RR42_RS35105 at 3328.963 kb on - strand, within RR42_RS35105 at 3329.101 kb on + strand, within RR42_RS35105 at 3329.421 kb on + strand at 3329.515 kb on + strand at 3329.515 kb on + strand at 3329.515 kb on + strand at 3329.515 kb on + strand at 3329.516 kb on - strand at 3329.516 kb on - strand at 3329.516 kb on - strand at 3329.606 kb on + strand, within RR42_RS35110 at 3329.606 kb on + strand at 3329.607 kb on - strand, within RR42_RS35110 at 3329.689 kb on + strand at 3329.690 kb on - strand at 3330.094 kb on + strand, within RR42_RS35115 at 3330.094 kb on + strand, within RR42_RS35115 at 3330.095 kb on - strand, within RR42_RS35115 at 3330.370 kb on - strand at 3330.501 kb on + strand, within RR42_RS35120 at 3330.502 kb on - strand, within RR42_RS35120 at 3330.512 kb on - strand, within RR42_RS35120 at 3330.657 kb on + strand, within RR42_RS35120 at 3330.657 kb on + strand, within RR42_RS35120 at 3330.657 kb on + strand, within RR42_RS35120 at 3330.658 kb on - strand, within RR42_RS35120 at 3330.886 kb on + strand, within RR42_RS35120 at 3330.886 kb on + strand, within RR42_RS35120 at 3330.887 kb on - strand, within RR42_RS35120 at 3330.887 kb on - strand, within RR42_RS35120 at 3330.887 kb on - strand, within RR42_RS35120 at 3330.888 kb on + strand, within RR42_RS35120 at 3330.889 kb on - strand, within RR42_RS35120 at 3330.958 kb on + strand, within RR42_RS35120 at 3330.958 kb on + strand, within RR42_RS35120 at 3330.958 kb on + strand, within RR42_RS35120 at 3330.958 kb on + strand, within RR42_RS35120 at 3331.115 kb on - strand, within RR42_RS35120 at 3331.115 kb on - strand, within RR42_RS35120 at 3331.206 kb on + strand, within RR42_RS35120 at 3331.206 kb on + strand, within RR42_RS35120 at 3331.206 kb on + strand, within RR42_RS35120 at 3331.216 kb on + strand, within RR42_RS35120 at 3331.216 kb on + strand, within RR42_RS35120 at 3331.216 kb on + strand, within RR42_RS35120 at 3331.217 kb on - strand, within RR42_RS35120 at 3331.217 kb on - strand, within RR42_RS35120 at 3331.217 kb on - strand, within RR42_RS35120 at 3331.218 kb on + strand, within RR42_RS35120 at 3331.218 kb on + strand, within RR42_RS35120 at 3331.219 kb on - strand, within RR42_RS35120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM remove 3,328,962 + RR42_RS35105 0.58 -1.8 3,328,963 - RR42_RS35105 0.58 +0.4 3,329,101 + RR42_RS35105 0.71 +3.4 3,329,421 + -0.1 3,329,515 + -0.3 3,329,515 + -1.9 3,329,515 + -0.4 3,329,515 + -0.7 3,329,516 - -0.5 3,329,516 - +0.9 3,329,516 - +1.5 3,329,606 + RR42_RS35110 0.54 -1.6 3,329,606 + +2.4 3,329,607 - RR42_RS35110 0.55 +0.0 3,329,689 + -0.9 3,329,690 - +0.4 3,330,094 + RR42_RS35115 0.54 +0.0 3,330,094 + RR42_RS35115 0.54 -0.6 3,330,095 - RR42_RS35115 0.54 -0.1 3,330,370 - +0.9 3,330,501 + RR42_RS35120 0.11 +0.0 3,330,502 - RR42_RS35120 0.11 +1.1 3,330,512 - RR42_RS35120 0.11 -0.5 3,330,657 + RR42_RS35120 0.23 +0.4 3,330,657 + RR42_RS35120 0.23 +0.9 3,330,657 + RR42_RS35120 0.23 +1.5 3,330,658 - RR42_RS35120 0.23 +0.4 3,330,886 + RR42_RS35120 0.41 -1.2 3,330,886 + RR42_RS35120 0.41 -1.0 3,330,887 - RR42_RS35120 0.41 -0.3 3,330,887 - RR42_RS35120 0.41 +0.7 3,330,887 - RR42_RS35120 0.41 -0.1 3,330,888 + RR42_RS35120 0.41 -0.1 3,330,889 - RR42_RS35120 0.41 -0.0 3,330,958 + RR42_RS35120 0.46 -1.1 3,330,958 + RR42_RS35120 0.46 +0.2 3,330,958 + RR42_RS35120 0.46 +0.1 3,330,958 + RR42_RS35120 0.46 +0.8 3,331,115 - RR42_RS35120 0.59 +0.4 3,331,115 - RR42_RS35120 0.59 -0.7 3,331,206 + RR42_RS35120 0.66 -1.1 3,331,206 + RR42_RS35120 0.66 +0.3 3,331,206 + RR42_RS35120 0.66 +0.3 3,331,216 + RR42_RS35120 0.66 +0.0 3,331,216 + RR42_RS35120 0.66 +1.0 3,331,216 + RR42_RS35120 0.66 -1.5 3,331,217 - RR42_RS35120 0.67 -0.5 3,331,217 - RR42_RS35120 0.67 -1.1 3,331,217 - RR42_RS35120 0.67 -1.9 3,331,218 + RR42_RS35120 0.67 +0.9 3,331,218 + RR42_RS35120 0.67 -0.4 3,331,219 - RR42_RS35120 0.67 -0.4
Or see this region's nucleotide sequence