Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09020

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09015 and RR42_RS09020 are separated by 73 nucleotidesRR42_RS09020 and RR42_RS09025 are separated by 246 nucleotides RR42_RS09015: RR42_RS09015 - trigger factor, at 1,894,180 to 1,895,541 _RS09015 RR42_RS09020: RR42_RS09020 - Clp protease ClpP, at 1,895,615 to 1,896,265 _RS09020 RR42_RS09025: RR42_RS09025 - Clp protease ATP-binding protein, at 1,896,512 to 1,897,786 _RS09025 Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -3 -2 -1 0 1at 1894.633 kb on + strand, within RR42_RS09015at 1894.633 kb on + strand, within RR42_RS09015at 1895.356 kb on + strand, within RR42_RS09015at 1895.389 kb on + strand, within RR42_RS09015at 1895.425 kb on + strandat 1895.867 kb on + strand, within RR42_RS09020at 1895.912 kb on + strand, within RR42_RS09020at 1896.354 kb on + strandat 1896.356 kb on + strandat 1896.456 kb on + strandat 1896.495 kb on + strandat 1896.495 kb on + strandat 1896.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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1,894,633 + RR42_RS09015 0.33 +1.1
1,894,633 + RR42_RS09015 0.33 -3.2
1,895,356 + RR42_RS09015 0.86 -0.2
1,895,389 + RR42_RS09015 0.89 -0.6
1,895,425 + -0.5
1,895,867 + RR42_RS09020 0.39 -0.9
1,895,912 + RR42_RS09020 0.46 +0.1
1,896,354 + +1.5
1,896,356 + +0.5
1,896,456 + -0.9
1,896,495 + -1.5
1,896,495 + +0.3
1,896,495 + -0.9

Or see this region's nucleotide sequence