Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07350

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07345 and RR42_RS07350 are separated by 107 nucleotidesRR42_RS07350 and RR42_RS07355 are separated by 72 nucleotidesRR42_RS07355 and RR42_RS07360 are separated by 134 nucleotides RR42_RS07345: RR42_RS07345 - methenyltetrahydrofolate cyclohydrolase, at 1,567,122 to 1,567,973 _RS07345 RR42_RS07350: RR42_RS07350 - hypothetical protein, at 1,568,081 to 1,568,764 _RS07350 RR42_RS07355: RR42_RS07355 - LuxR family transcriptional regulator, at 1,568,837 to 1,569,469 _RS07355 RR42_RS07360: RR42_RS07360 - ATPase, at 1,569,604 to 1,572,192 _RS07360 Position (kb) 1568 1569Strain fitness (log2 ratio) -2 -1 0 1at 1568.016 kb on - strandat 1568.016 kb on - strandat 1568.016 kb on - strandat 1568.016 kb on - strandat 1568.017 kb on + strandat 1568.017 kb on + strandat 1568.018 kb on - strandat 1568.018 kb on - strandat 1568.050 kb on - strandat 1568.060 kb on + strandat 1568.060 kb on + strandat 1568.061 kb on - strandat 1568.071 kb on + strandat 1568.092 kb on + strandat 1568.093 kb on - strandat 1568.093 kb on - strandat 1568.093 kb on - strandat 1568.093 kb on - strandat 1568.241 kb on + strand, within RR42_RS07350at 1568.241 kb on + strand, within RR42_RS07350at 1568.436 kb on - strand, within RR42_RS07350at 1568.600 kb on + strand, within RR42_RS07350at 1568.600 kb on + strand, within RR42_RS07350at 1568.600 kb on + strand, within RR42_RS07350at 1568.601 kb on - strand, within RR42_RS07350at 1568.601 kb on - strand, within RR42_RS07350at 1568.636 kb on - strand, within RR42_RS07350at 1568.711 kb on + strandat 1568.711 kb on + strandat 1568.711 kb on + strandat 1568.712 kb on - strandat 1568.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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1,568,016 - -1.5
1,568,016 - +0.4
1,568,016 - -2.3
1,568,016 - +0.2
1,568,017 + -2.0
1,568,017 + +1.2
1,568,018 - -1.5
1,568,018 - -0.5
1,568,050 - +0.3
1,568,060 + -1.0
1,568,060 + -1.2
1,568,061 - -0.0
1,568,071 + -0.8
1,568,092 + +0.3
1,568,093 - +0.6
1,568,093 - +0.9
1,568,093 - +0.5
1,568,093 - -0.7
1,568,241 + RR42_RS07350 0.23 -0.2
1,568,241 + RR42_RS07350 0.23 -1.4
1,568,436 - RR42_RS07350 0.52 -2.1
1,568,600 + RR42_RS07350 0.76 +0.1
1,568,600 + RR42_RS07350 0.76 -0.6
1,568,600 + RR42_RS07350 0.76 -1.0
1,568,601 - RR42_RS07350 0.76 -0.3
1,568,601 - RR42_RS07350 0.76 -0.7
1,568,636 - RR42_RS07350 0.81 -0.6
1,568,711 + -1.5
1,568,711 + -0.3
1,568,711 + +0.6
1,568,712 - -0.5
1,568,712 - -0.5

Or see this region's nucleotide sequence