Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04120

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04105 and RR42_RS04110 are separated by 25 nucleotidesRR42_RS04110 and RR42_RS04115 overlap by 4 nucleotidesRR42_RS04115 and RR42_RS04120 are separated by 9 nucleotidesRR42_RS04120 and RR42_RS04125 are separated by 38 nucleotidesRR42_RS04125 and RR42_RS04130 are separated by 34 nucleotides RR42_RS04105: RR42_RS04105 - pilus assembly protein CpaE, at 908,648 to 909,841 _RS04105 RR42_RS04110: RR42_RS04110 - pilus assembly protein TadG, at 909,867 to 910,325 _RS04110 RR42_RS04115: RR42_RS04115 - pilus assembly protein TadG, at 910,322 to 910,831 _RS04115 RR42_RS04120: RR42_RS04120 - pilus assembly protein TadG, at 910,841 to 912,121 _RS04120 RR42_RS04125: RR42_RS04125 - lipoprotein, at 912,160 to 912,501 _RS04125 RR42_RS04130: RR42_RS04130 - secretin, at 912,536 to 914,383 _RS04130 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -2 -1 0 1 2at 909.868 kb on + strandat 909.868 kb on + strandat 909.869 kb on - strandat 909.990 kb on + strand, within RR42_RS04110at 910.196 kb on - strand, within RR42_RS04110at 910.325 kb on + strandat 910.328 kb on + strandat 910.329 kb on - strandat 910.329 kb on - strandat 910.401 kb on + strand, within RR42_RS04115at 910.401 kb on + strand, within RR42_RS04115at 910.402 kb on - strand, within RR42_RS04115at 910.405 kb on + strand, within RR42_RS04115at 910.405 kb on + strand, within RR42_RS04115at 910.406 kb on - strand, within RR42_RS04115at 910.406 kb on - strand, within RR42_RS04115at 910.600 kb on - strand, within RR42_RS04115at 910.863 kb on - strandat 910.863 kb on - strandat 911.172 kb on + strand, within RR42_RS04120at 911.219 kb on - strand, within RR42_RS04120at 911.219 kb on - strand, within RR42_RS04120at 911.496 kb on + strand, within RR42_RS04120at 911.550 kb on + strand, within RR42_RS04120at 911.550 kb on + strand, within RR42_RS04120at 911.745 kb on + strand, within RR42_RS04120at 911.746 kb on - strand, within RR42_RS04120at 911.767 kb on - strand, within RR42_RS04120at 911.814 kb on + strand, within RR42_RS04120at 911.814 kb on + strand, within RR42_RS04120at 911.873 kb on - strand, within RR42_RS04120at 911.876 kb on + strand, within RR42_RS04120at 912.260 kb on - strand, within RR42_RS04125at 912.275 kb on + strand, within RR42_RS04125at 912.276 kb on - strand, within RR42_RS04125at 912.276 kb on - strand, within RR42_RS04125at 912.729 kb on - strand, within RR42_RS04130at 912.775 kb on + strand, within RR42_RS04130at 912.900 kb on + strand, within RR42_RS04130at 912.901 kb on - strand, within RR42_RS04130at 912.922 kb on + strand, within RR42_RS04130at 913.082 kb on + strand, within RR42_RS04130

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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909,868 + +0.6
909,868 + +2.3
909,869 - +1.0
909,990 + RR42_RS04110 0.27 -0.0
910,196 - RR42_RS04110 0.72 -0.3
910,325 + +1.5
910,328 + +0.9
910,329 - +1.1
910,329 - +0.1
910,401 + RR42_RS04115 0.15 -0.5
910,401 + RR42_RS04115 0.15 -0.0
910,402 - RR42_RS04115 0.16 -0.3
910,405 + RR42_RS04115 0.16 +0.5
910,405 + RR42_RS04115 0.16 +0.3
910,406 - RR42_RS04115 0.16 +2.3
910,406 - RR42_RS04115 0.16 -0.7
910,600 - RR42_RS04115 0.55 -1.2
910,863 - -0.6
910,863 - +0.0
911,172 + RR42_RS04120 0.26 +0.1
911,219 - RR42_RS04120 0.30 -0.5
911,219 - RR42_RS04120 0.30 -1.1
911,496 + RR42_RS04120 0.51 -1.7
911,550 + RR42_RS04120 0.55 -0.4
911,550 + RR42_RS04120 0.55 -2.0
911,745 + RR42_RS04120 0.71 +0.6
911,746 - RR42_RS04120 0.71 -0.8
911,767 - RR42_RS04120 0.72 -1.7
911,814 + RR42_RS04120 0.76 +0.5
911,814 + RR42_RS04120 0.76 -1.6
911,873 - RR42_RS04120 0.81 -1.2
911,876 + RR42_RS04120 0.81 -0.0
912,260 - RR42_RS04125 0.29 -0.4
912,275 + RR42_RS04125 0.34 -0.9
912,276 - RR42_RS04125 0.34 -0.3
912,276 - RR42_RS04125 0.34 -1.6
912,729 - RR42_RS04130 0.10 +0.9
912,775 + RR42_RS04130 0.13 +0.6
912,900 + RR42_RS04130 0.20 +0.7
912,901 - RR42_RS04130 0.20 -0.7
912,922 + RR42_RS04130 0.21 -0.1
913,082 + RR42_RS04130 0.30 -1.5

Or see this region's nucleotide sequence