Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04075

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04070 and RR42_RS04075 are separated by 526 nucleotidesRR42_RS04075 and RR42_RS04080 are separated by 40 nucleotides RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567 _RS04070 RR42_RS04075: RR42_RS04075 - molecular chaperone GroES, at 902,094 to 902,384 _RS04075 RR42_RS04080: RR42_RS04080 - molecular chaperone GroEL, at 902,425 to 904,068 _RS04080 Position (kb) 902 903Strain fitness (log2 ratio) -2 -1 0 1 2at 901.172 kb on + strand, within RR42_RS04070at 901.172 kb on + strand, within RR42_RS04070at 901.173 kb on - strand, within RR42_RS04070at 901.173 kb on - strand, within RR42_RS04070at 901.299 kb on + strand, within RR42_RS04070at 901.300 kb on - strand, within RR42_RS04070at 901.300 kb on - strand, within RR42_RS04070at 901.300 kb on - strand, within RR42_RS04070at 901.470 kb on - strandat 901.579 kb on + strandat 901.581 kb on + strandat 901.582 kb on - strandat 901.582 kb on - strandat 901.597 kb on + strandat 901.597 kb on + strandat 901.598 kb on - strandat 901.598 kb on - strandat 901.598 kb on - strandat 901.643 kb on + strandat 901.659 kb on + strandat 901.872 kb on + strandat 901.872 kb on + strandat 901.932 kb on + strandat 901.932 kb on + strandat 901.970 kb on + strandat 901.970 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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901,172 + RR42_RS04070 0.61 -1.1
901,172 + RR42_RS04070 0.61 -1.8
901,173 - RR42_RS04070 0.61 -2.0
901,173 - RR42_RS04070 0.61 +2.3
901,299 + RR42_RS04070 0.73 -0.2
901,300 - RR42_RS04070 0.73 +2.0
901,300 - RR42_RS04070 0.73 -1.2
901,300 - RR42_RS04070 0.73 -1.4
901,470 - -0.2
901,579 + +0.4
901,581 + -1.2
901,582 - +0.2
901,582 - +0.6
901,597 + -1.3
901,597 + +0.2
901,598 - +0.7
901,598 - -0.3
901,598 - -0.3
901,643 + -0.3
901,659 + -1.6
901,872 + +0.1
901,872 + -0.3
901,932 + +0.3
901,932 + -0.7
901,970 + +1.0
901,970 + -1.8

Or see this region's nucleotide sequence