Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03940

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03935 and RR42_RS03940 are separated by 66 nucleotidesRR42_RS03940 and RR42_RS03945 are separated by 181 nucleotides RR42_RS03935: RR42_RS03935 - purine permease, at 867,507 to 868,805 _RS03935 RR42_RS03940: RR42_RS03940 - membrane protein, at 868,872 to 870,041 _RS03940 RR42_RS03945: RR42_RS03945 - chloride channel protein, at 870,223 to 871,962 _RS03945 Position (kb) 868 869 870 871Strain fitness (log2 ratio) -2 -1 0 1at 868.203 kb on + strand, within RR42_RS03935at 868.203 kb on + strand, within RR42_RS03935at 868.405 kb on - strand, within RR42_RS03935at 868.405 kb on - strand, within RR42_RS03935at 868.413 kb on + strand, within RR42_RS03935at 868.647 kb on + strand, within RR42_RS03935at 868.647 kb on + strand, within RR42_RS03935at 868.648 kb on - strand, within RR42_RS03935at 868.648 kb on - strand, within RR42_RS03935at 868.650 kb on - strand, within RR42_RS03935at 868.777 kb on + strandat 868.899 kb on + strandat 868.900 kb on - strandat 869.314 kb on + strand, within RR42_RS03940at 869.315 kb on - strand, within RR42_RS03940at 870.149 kb on - strandat 870.365 kb on - strandat 870.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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868,203 + RR42_RS03935 0.54 +1.6
868,203 + RR42_RS03935 0.54 +1.1
868,405 - RR42_RS03935 0.69 -1.8
868,405 - RR42_RS03935 0.69 +0.8
868,413 + RR42_RS03935 0.70 +0.1
868,647 + RR42_RS03935 0.88 -0.4
868,647 + RR42_RS03935 0.88 +0.1
868,648 - RR42_RS03935 0.88 +0.5
868,648 - RR42_RS03935 0.88 -1.0
868,650 - RR42_RS03935 0.88 -0.9
868,777 + +0.4
868,899 + -0.6
868,900 - +0.5
869,314 + RR42_RS03940 0.38 -0.4
869,315 - RR42_RS03940 0.38 -0.0
870,149 - -0.8
870,365 - -0.5
870,365 - -1.3

Or see this region's nucleotide sequence