Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03170

Experiment: R2A with Nickel (II) chloride 0.35 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03165 and RR42_RS03170 are separated by 121 nucleotides RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855 _RS03165 RR42_RS03170: RR42_RS03170 - hypothetical protein, at 699,977 to 700,171 _RS03170 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 700.017 kb on + strand, within RR42_RS03170at 700.017 kb on + strand, within RR42_RS03170at 700.018 kb on - strand, within RR42_RS03170at 700.018 kb on - strand, within RR42_RS03170at 700.032 kb on + strand, within RR42_RS03170at 700.032 kb on + strand, within RR42_RS03170at 700.086 kb on + strand, within RR42_RS03170at 700.087 kb on - strand, within RR42_RS03170at 700.087 kb on - strand, within RR42_RS03170at 700.199 kb on - strandat 700.199 kb on - strandat 700.221 kb on - strandat 700.221 kb on - strandat 700.221 kb on - strandat 700.221 kb on - strandat 700.230 kb on + strandat 700.231 kb on - strandat 700.350 kb on - strandat 700.381 kb on + strandat 700.428 kb on + strandat 700.477 kb on + strandat 700.496 kb on - strandat 700.496 kb on - strandat 700.805 kb on + strandat 700.806 kb on - strandat 700.806 kb on - strandat 700.814 kb on + strandat 701.062 kb on + strandat 701.122 kb on + strandat 701.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM
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700,017 + RR42_RS03170 0.21 -2.8
700,017 + RR42_RS03170 0.21 -2.3
700,018 - RR42_RS03170 0.21 -0.3
700,018 - RR42_RS03170 0.21 +1.9
700,032 + RR42_RS03170 0.28 -2.4
700,032 + RR42_RS03170 0.28 -0.6
700,086 + RR42_RS03170 0.56 -1.9
700,087 - RR42_RS03170 0.56 +0.8
700,087 - RR42_RS03170 0.56 +0.8
700,199 - +0.3
700,199 - -0.1
700,221 - -0.5
700,221 - -0.3
700,221 - +0.6
700,221 - +0.9
700,230 + -0.5
700,231 - +0.7
700,350 - +0.4
700,381 + -2.3
700,428 + +1.5
700,477 + +1.5
700,496 - +0.6
700,496 - -0.6
700,805 + -1.1
700,806 - +1.1
700,806 - -0.2
700,814 + -0.3
701,062 + +0.1
701,122 + +0.6
701,123 - -0.1

Or see this region's nucleotide sequence