Experiment: R2A with Nickel (II) chloride 0.35 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01590 and RR42_RS01595 are separated by 183 nucleotides RR42_RS01595 and RR42_RS01600 are separated by 367 nucleotides
RR42_RS01590: RR42_RS01590 - GntR family transcriptional regulator, at 359,928 to 361,334
_RS01590
RR42_RS01595: RR42_RS01595 - hypothetical protein, at 361,518 to 361,856
_RS01595
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
Position (kb) 361
362 Strain fitness (log2 ratio) -2
-1
0
1 at 360.710 kb on - strand, within RR42_RS01590 at 360.712 kb on + strand, within RR42_RS01590 at 360.737 kb on + strand, within RR42_RS01590 at 360.892 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.031 kb on + strand, within RR42_RS01590 at 361.032 kb on - strand, within RR42_RS01590 at 361.152 kb on + strand, within RR42_RS01590 at 361.165 kb on + strand, within RR42_RS01590 at 361.166 kb on - strand, within RR42_RS01590 at 361.414 kb on + strand at 361.415 kb on - strand at 361.430 kb on + strand at 361.430 kb on + strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.431 kb on - strand at 361.528 kb on + strand at 361.529 kb on - strand at 361.529 kb on - strand at 361.912 kb on + strand at 361.912 kb on + strand at 361.918 kb on + strand at 361.918 kb on + strand at 361.919 kb on - strand at 361.919 kb on - strand at 361.919 kb on - strand at 362.022 kb on + strand at 362.023 kb on - strand at 362.023 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.039 kb on - strand at 362.095 kb on + strand at 362.428 kb on - strand at 362.527 kb on + strand at 362.527 kb on + strand at 362.629 kb on + strand, within RR42_RS01600 at 362.630 kb on - strand, within RR42_RS01600 at 362.732 kb on - strand, within RR42_RS01600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.35 mM remove 360,710 - RR42_RS01590 0.56 -0.5 360,712 + RR42_RS01590 0.56 -2.3 360,737 + RR42_RS01590 0.57 -0.7 360,892 + RR42_RS01590 0.69 +0.3 361,031 + RR42_RS01590 0.78 -0.1 361,031 + RR42_RS01590 0.78 -0.4 361,032 - RR42_RS01590 0.78 -0.1 361,152 + RR42_RS01590 0.87 -0.1 361,165 + RR42_RS01590 0.88 +0.1 361,166 - RR42_RS01590 0.88 -0.2 361,414 + +0.8 361,415 - -0.4 361,430 + +0.1 361,430 + -2.0 361,431 - -0.6 361,431 - +0.3 361,431 - +0.2 361,528 + -0.4 361,529 - -2.3 361,529 - -0.2 361,912 + +0.1 361,912 + +0.1 361,918 + -0.7 361,918 + +0.2 361,919 - +0.1 361,919 - +0.8 361,919 - -0.3 362,022 + -1.3 362,023 - -0.2 362,023 - +0.7 362,039 - -0.5 362,039 - -0.8 362,039 - -0.2 362,095 + -1.5 362,428 - -0.3 362,527 + -1.8 362,527 + -0.8 362,629 + RR42_RS01600 0.12 +0.1 362,630 - RR42_RS01600 0.12 -1.4 362,732 - RR42_RS01600 0.15 -0.2
Or see this region's nucleotide sequence