Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06085

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
1,370,109	+		HSERO_RS06075	0.57	-0.7
1,370,136	-		HSERO_RS06075	0.64	-0.4
1,370,438	+		HSERO_RS06080	0.13	-1.0
1,370,496	+		HSERO_RS06080	0.25	-0.5
1,370,534	+		HSERO_RS06080	0.34	-0.4
1,370,574	+		HSERO_RS06080	0.43	-1.1
1,370,574	+		HSERO_RS06080	0.43	-0.1
1,370,647	+		HSERO_RS06080	0.59	-1.3
1,370,647	+		HSERO_RS06080	0.59	+2.3
1,370,700	+		HSERO_RS06080	0.70	+0.9
1,370,734	-		HSERO_RS06080	0.78	-0.4
1,370,756	+		HSERO_RS06080	0.82	-1.2
1,370,764	-		HSERO_RS06080	0.84	-0.2
1,370,822	-				-1.1
1,370,907	+				-0.2
1,370,922	-				-1.0
1,370,980	-				+0.4
1,371,021	+				+0.4
1,371,039	+				-0.9
1,371,042	-				+1.9
1,371,153	+				+0.3
1,371,260	+		HSERO_RS06085	0.19	+0.2
1,371,442	-		HSERO_RS06085	0.33	+0.4
1,371,642	+		HSERO_RS06085	0.50	+0.4
1,371,674	+		HSERO_RS06085	0.52	-0.2
1,371,674	+		HSERO_RS06085	0.52	+0.8
1,371,687	-		HSERO_RS06085	0.53	+1.0
1,371,757	-		HSERO_RS06085	0.59	+0.1
1,371,835	-		HSERO_RS06085	0.65	-0.0
1,371,947	-		HSERO_RS06085	0.74	-0.6
1,371,980	+		HSERO_RS06085	0.77	-0.0
1,371,980	-		HSERO_RS06085	0.77	-1.0
1,372,011	-		HSERO_RS06085	0.80	+0.5
1,372,016	+		HSERO_RS06085	0.80	+0.9
1,372,024	-		HSERO_RS06085	0.81	-0.4
1,372,082	+		HSERO_RS06085	0.85	-0.5
1,372,088	-		HSERO_RS06085	0.86	+0.6
1,372,206	+				-0.1
1,372,244	+				-0.4
1,372,244	+				-0.7
1,372,244	+				-0.9
1,372,244	+				-2.4
1,372,343	+				-0.5
1,372,379	+				+0.6
1,372,379	+				-0.9
1,372,379	+				-0.4
1,372,389	+				-3.6
1,372,389	+				+1.3
1,372,389	+				+1.4
1,372,389	+				-0.7
1,372,389	+				+0.1
1,372,389	+				-1.2
1,372,395	-				+0.6
1,372,397	-				-0.4
1,372,397	-				+0.7
1,372,397	-				-0.1
1,372,404	+				-0.3
1,372,404	+				-0.3
1,372,404	+				-0.4
1,372,404	+				-1.1
1,372,409	+				-0.8
1,372,410	+				-0.3
1,372,410	+				+0.3
1,372,410	+				+0.3
1,372,412	-				-1.8
1,372,412	-				+3.5
1,372,412	-				-1.1
1,372,412	-				-0.8
1,372,412	-				+0.2
1,372,412	-				-0.1
1,372,412	-				-0.1
1,372,412	-				-0.5
1,372,412	-				+0.5
1,372,412	-				+0.5
1,372,412	-				+0.2
1,372,412	-				-0.3
1,372,417	+				-0.0
1,372,417	+				-1.1
1,372,417	+				+0.7
1,372,417	+				-0.0
1,372,417	+				-0.2
1,372,417	-				-0.4
1,372,418	-				-0.1
1,372,418	-				-0.8
1,372,425	-				+1.9
1,372,425	-				+0.9
1,372,425	-				+0.2
1,372,425	-				+0.1
1,372,426	-				-1.3
1,372,440	-				-1.3
1,372,445	-				+1.5
1,372,445	-				+0.9
1,372,445	-				+0.6
1,372,445	-				+0.1
1,372,450	-				-0.4
1,372,516	+				-0.1
1,372,518	-				+0.6
1,372,520	+				+0.6
1,372,521	+				-0.3
1,372,523	-				-0.4
1,372,524	+				+0.2
1,372,524	-				+0.1
1,372,524	-				-0.1
1,372,528	+				-0.2
1,372,528	+				-0.6
1,372,528	-				+0.2
1,372,530	+				+0.7
1,372,530	+				-0.6
1,372,530	+				+0.7
1,372,533	+				+0.2
1,372,533	+				+0.3
1,372,533	+				+0.5
1,372,533	+				-0.9
1,372,533	-				-0.2
1,372,535	+				+0.0
1,372,536	-				-0.0
1,372,536	-				-1.5
1,372,536	-				-0.3
1,372,536	-				+0.4
1,372,538	-				+4.2
1,372,538	-				+0.6
1,372,538	-				+1.2
1,372,538	-				+0.1
1,372,538	-				-0.3
1,372,538	-				-2.8
1,372,538	-				-0.1
1,372,544	+				+0.1
1,372,548	-				+2.1
1,372,554	-				-2.2
1,372,572	+				+0.1
1,372,578	+				+0.1
1,372,578	+				-1.1
1,372,578	+				+0.9
1,372,578	+				-0.7
1,372,583	+				+0.9
1,372,586	-				+0.0
1,372,591	-				-0.4
1,372,591	-				+0.5
1,372,596	-				+0.4
1,372,596	-				-0.4
1,372,598	+				+0.4
1,372,598	+				-1.3
1,372,598	+				-2.1
1,372,598	+				+1.1
1,372,598	+				-0.1
1,372,598	+				+1.0
1,372,598	+				-0.6
1,372,601	-				-3.1
1,372,606	-				+0.7
1,372,606	-				+0.1
1,372,608	+				+0.1
1,372,615	+				-0.1
1,372,615	+				+0.0
1,372,615	+				-0.5
1,372,616	-				-0.7
1,372,616	-				-0.3
1,372,616	-				-0.2
1,372,625	+				+0.9
1,372,625	+				+0.3
1,372,625	+				+1.3
1,372,625	+				-0.1
1,372,625	+				-0.2
1,372,625	+				+0.3
1,372,625	+				-0.8
1,372,633	-				+0.8
1,372,633	-				+0.9
1,372,633	-				+1.9
1,372,633	-				-0.1
1,372,633	-				-1.3
1,372,633	-				-1.9
1,372,633	-				-0.2
1,372,633	-				+1.4
1,372,633	-				+0.3
1,372,635	+				+0.9
1,372,636	-				-0.4
1,372,637	+				-0.5
1,372,640	+				+1.5
1,372,640	+				+1.1
1,372,643	-				-1.8
1,372,645	-				-0.3
1,372,645	-				-0.4
1,372,652	+				+0.9
1,372,655	+				-1.8
1,372,663	-				-0.3
1,372,663	-				+0.0
1,372,663	-				-2.0
1,372,663	-				-0.6
1,372,663	-				+0.2
1,372,663	-				-0.8
1,372,668	-				-0.1
1,372,670	+				-0.4
1,372,670	-				-0.4
1,372,680	-				+0.1
1,372,692	+				-0.0
1,372,695	-				+0.1
1,372,696	+				+0.1
1,372,704	-				-0.2
1,372,706	+				-0.4
1,372,709	-				+1.0
1,372,709	-				-0.6
1,372,710	+				-1.1
1,372,714	-				+0.7
1,372,714	-				-1.9
1,372,718	-				-0.7
1,372,718	-				+0.3
1,372,720	+				+0.2
1,372,720	+				-0.3
1,372,726	+				-2.9
1,372,728	-				-0.2
1,372,728	-				+1.9
1,372,728	-				-1.1
1,372,734	-				-1.3
1,372,739	-				+0.4
1,372,741	+				-0.3
1,372,741	+				-1.0
1,372,744	+				+1.2
1,372,744	+				-0.5
1,372,745	-				+1.6
1,372,759	+				-2.0
1,372,767	-				+0.9
1,372,792	+				+0.0
1,372,792	+				+0.3
1,372,801	-				-0.1
1,372,809	-				+1.9
1,372,809	-				+0.4
1,372,809	-				-0.2
1,372,826	+				+0.2
1,372,832	+				+0.5
1,372,835	+				-0.1
1,372,835	+				+1.7
1,372,835	+				+0.1
1,372,835	+				-0.5
1,372,835	+				+1.8
1,372,835	+				-0.8
1,372,835	+				+0.0
1,372,835	+				+1.3
1,372,835	+				+0.4
1,372,837	+				-0.3
1,372,837	+				-0.7
1,372,837	+				+0.7
1,372,837	+				+0.1
1,372,837	+				+0.0
1,372,837	+				-0.3
1,372,837	+				-0.0
1,372,837	+				-0.4
1,372,837	+				+0.1
1,372,837	+				-0.9
1,372,837	+				-0.5
1,372,837	+				+0.0
1,372,837	+				-0.1
1,372,837	+				+0.9
1,372,837	+				-0.2
1,372,837	+				-0.0
1,372,837	+				-0.1
1,372,837	+				+0.6
1,372,837	+				-1.3
1,372,837	+				-0.4
1,372,837	+				+0.9
1,372,837	+				+1.2
1,372,837	+				+1.9
1,372,837	+				+0.8
1,372,837	+				+0.7
1,372,837	+				+1.8
1,372,837	+				+0.5
1,372,837	+				+0.6
1,372,837	+				+0.5
1,372,837	+				-0.7
1,372,837	+				-0.4
1,372,837	+				+0.5
1,372,837	+				+1.0
1,372,837	+				+0.3
1,372,837	+				-1.0
1,372,837	+				+0.3
1,372,837	+				+1.9
1,372,837	+				+1.6
1,372,840	-				+0.6
1,372,840	-				+1.2
1,372,843	-				+0.3
1,372,843	-				+0.1
1,372,843	-				+0.3
1,372,843	-				+0.3
1,372,843	-				-0.1
1,372,843	-				+0.9
1,372,845	-				-0.3
1,372,845	-				+0.7
1,372,845	-				+0.5
1,372,845	-				+2.5
1,372,845	-				-0.6
1,372,845	-				+0.3
1,372,845	-				+0.7
1,372,845	-				+0.1
1,372,845	-				-0.9
1,372,845	-				-0.9
1,372,845	-				-0.8
1,372,845	-				+0.1
1,372,845	-				-1.5
1,372,845	-				-0.5
1,372,845	-				+0.3
1,372,845	-				-1.7
1,372,845	-				-1.0
1,372,845	-				-0.6
1,372,845	-				-0.3
1,372,845	-				+0.5
1,372,845	-				-1.1
1,372,845	-				+0.5
1,372,847	+				-0.4
1,372,847	+				-1.1
1,372,847	+				+0.5
1,372,857	+				-2.5
1,372,860	-				+0.9
1,372,865	+				-0.1
1,372,875	-				-1.2
1,372,882	+				-0.1
1,372,882	+				-1.8
1,372,882	+				+0.0
1,372,884	+				-0.9
1,372,884	+				-0.5
1,372,884	+				-0.4
1,372,889	+				+0.3
1,372,890	-				+0.7
1,372,892	-				+0.3
1,372,892	-				+2.0
1,372,894	+				+0.9
1,372,894	+				-0.4
1,372,894	+				-1.9
1,372,902	-				+0.3
1,372,907	-				+2.1
1,372,912	-				+0.1
1,372,928	+				-1.1
1,372,938	+				+0.8
1,372,942	-				-0.0
1,372,942	-				+0.2
1,372,942	-				-0.7
1,372,949	+				+0.6
1,372,978	+				-1.1
1,372,978	+				-0.1
1,372,986	-				+0.3
1,372,986	-				+0.7
1,372,992	+				-1.2
1,372,992	+				+0.3
1,372,997	+				-0.1
1,373,000	-				+0.0
1,373,002	+				-0.3
1,373,002	+				+0.3
1,373,002	+				-0.5
1,373,004	+				+0.2
1,373,004	+				+0.1
1,373,010	-				+0.2
1,373,010	-				+0.4
1,373,012	-				-0.1
1,373,012	-				-0.8
1,373,025	+				+0.3
1,373,031	-				-0.5
1,373,032	+				-1.3
1,373,042	+				+0.9
1,373,045	-				-1.5
1,373,049	+				+0.1
1,373,049	+				-0.1
1,373,052	-				-1.6
1,373,052	-				-0.8
1,373,053	-				-0.2
1,373,053	-				-0.0
1,373,059	+				+0.6
1,373,059	+				+1.3
1,373,059	+				+0.3
1,373,059	+				+0.3
1,373,059	+				-0.9
1,373,059	+				-0.1
1,373,059	+				-0.3
1,373,062	+				-0.5
1,373,065	-				-0.5
1,373,067	-				-1.2
1,373,067	-				-0.0
1,373,067	-				-0.5
1,373,067	-				+0.9
1,373,095	-				+0.4
1,373,095	-				-0.5
1,373,095	-				+0.1
1,373,095	-				+0.3
1,373,095	-				-0.6
1,373,095	-				+0.9
1,373,095	-				-0.3
1,373,143	-				+0.5
1,373,148	+				+2.7
1,373,148	-				-0.8
1,373,151	-				+3.5
1,373,156	+				-1.0
1,373,156	-				+0.3
1,373,156	-				-1.5
1,373,156	-				+0.1
1,373,163	-				-0.2
1,373,164	-				-1.1
1,373,165	+				-0.9
1,373,165	-				+0.3
1,373,165	-				+0.2
1,373,165	-				+0.9
1,373,175	-				+0.0
1,373,185	+				+0.0
1,373,185	+				-0.3
1,373,185	+				-0.0
1,373,185	+				-0.0
1,373,193	-				-0.6
1,373,193	-				+0.1
1,373,193	-				-0.5
1,373,193	-				+0.0
1,373,193	-				+0.4
1,373,193	-				-0.8
1,373,193	-				-0.1
1,373,193	-				-1.3
1,373,198	+				-1.2
1,373,199	+				+1.1
1,373,199	+				-1.9
1,373,199	+				+1.2
1,373,199	+				-1.2
1,373,199	+				-0.1
1,373,207	-				+0.4
1,373,207	-				+0.6
1,373,207	-				-0.3
1,373,207	-				-0.0
1,373,207	-				-0.9
1,373,207	-				-0.4
1,373,208	+				+0.9
1,373,209	+				-1.9
1,373,209	+				+1.1
1,373,209	+				+0.4
1,373,210	+				-0.1
1,373,216	-				-0.4
1,373,216	-				-1.5
1,373,218	-				-0.7
1,373,221	+				-0.8
1,373,225	+				+0.3
1,373,225	+				-0.3
1,373,225	+				+0.1
1,373,225	+				-0.1
1,373,225	+				+0.1
1,373,225	+				+0.6
1,373,233	-				-1.1
1,373,233	-				-0.0
1,373,233	-				-0.4
1,373,233	-				-0.4