Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03359 and CCNA_03360 are separated by 166 nucleotides CCNA_03360 and CCNA_03905 are separated by 49 nucleotides CCNA_03905 and CCNA_03273 are separated by 161 nucleotides
CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492
_03359
CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750
_03360
CCNA_03905: CCNA_03905 - hypothetical protein, at 3,539,800 to 3,540,480
_03905
CCNA_03273: CCNA_03273 - hypothetical protein, at 3,540,642 to 3,541,286
_03273
Position (kb)
3538
3539
3540 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3538.446 kb on + strand at 3538.500 kb on - strand at 3538.514 kb on + strand at 3538.514 kb on + strand at 3538.522 kb on - strand at 3538.547 kb on + strand at 3538.562 kb on + strand at 3538.576 kb on + strand at 3538.586 kb on - strand at 3538.601 kb on - strand at 3538.601 kb on - strand at 3538.624 kb on + strand at 3539.700 kb on - strand at 3539.702 kb on + strand at 3539.738 kb on - strand at 3539.766 kb on - strand at 3539.782 kb on + strand at 3539.783 kb on + strand at 3539.783 kb on + strand at 3539.783 kb on + strand at 3539.829 kb on - strand at 3539.840 kb on + strand at 3539.848 kb on - strand at 3539.848 kb on - strand at 3539.848 kb on - strand at 3539.849 kb on - strand at 3539.869 kb on + strand, within CCNA_03905 at 3539.872 kb on - strand, within CCNA_03905 at 3539.874 kb on + strand, within CCNA_03905 at 3539.885 kb on + strand, within CCNA_03905 at 3539.890 kb on + strand, within CCNA_03905 at 3539.890 kb on + strand, within CCNA_03905 at 3539.893 kb on - strand, within CCNA_03905 at 3539.904 kb on + strand, within CCNA_03905 at 3539.912 kb on - strand, within CCNA_03905 at 3539.947 kb on + strand, within CCNA_03905 at 3539.950 kb on - strand, within CCNA_03905 at 3540.009 kb on + strand, within CCNA_03905 at 3540.074 kb on - strand, within CCNA_03905 at 3540.076 kb on + strand, within CCNA_03905 at 3540.082 kb on + strand, within CCNA_03905 at 3540.092 kb on + strand, within CCNA_03905 at 3540.092 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.097 kb on + strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.105 kb on - strand, within CCNA_03905 at 3540.123 kb on - strand, within CCNA_03905 at 3540.140 kb on - strand, within CCNA_03905 at 3540.214 kb on - strand, within CCNA_03905 at 3540.222 kb on + strand, within CCNA_03905 at 3540.249 kb on + strand, within CCNA_03905 at 3540.281 kb on - strand, within CCNA_03905 at 3540.325 kb on + strand, within CCNA_03905 at 3540.336 kb on + strand, within CCNA_03905 at 3540.344 kb on - strand, within CCNA_03905 at 3540.352 kb on + strand at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.352 kb on + strand, within CCNA_03905 at 3540.360 kb on - strand, within CCNA_03905 at 3540.388 kb on - strand, within CCNA_03905 at 3540.426 kb on - strand at 3540.450 kb on + strand at 3540.456 kb on + strand at 3540.464 kb on - strand at 3540.491 kb on + strand at 3540.498 kb on + strand at 3540.498 kb on + strand at 3540.561 kb on - strand at 3540.575 kb on + strand at 3540.605 kb on - strand at 3540.654 kb on - strand at 3540.656 kb on - strand at 3540.716 kb on - strand, within CCNA_03273 at 3540.740 kb on - strand, within CCNA_03273 at 3540.740 kb on - strand, within CCNA_03273 at 3540.750 kb on - strand, within CCNA_03273
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,538,446 + +0.0 3,538,500 - -1.3 3,538,514 + +1.7 3,538,514 + +1.4 3,538,522 - -3.0 3,538,547 + +1.1 3,538,562 + +1.6 3,538,576 + +1.8 3,538,586 - -2.6 3,538,601 - +0.1 3,538,601 - -0.9 3,538,624 + +1.7 3,539,700 - -1.0 3,539,702 + +0.2 3,539,738 - +2.5 3,539,766 - +0.1 3,539,782 + +1.6 3,539,783 + +1.0 3,539,783 + +0.8 3,539,783 + +1.4 3,539,829 - +1.5 3,539,840 + +0.3 3,539,848 - +1.6 3,539,848 - +0.4 3,539,848 - +0.9 3,539,849 - -1.3 3,539,869 + CCNA_03905 0.10 +1.5 3,539,872 - CCNA_03905 0.11 +0.8 3,539,874 + CCNA_03905 0.11 +1.4 3,539,885 + CCNA_03905 0.12 +1.2 3,539,890 + CCNA_03905 0.13 +0.3 3,539,890 + CCNA_03905 0.13 -0.3 3,539,893 - CCNA_03905 0.14 +0.4 3,539,904 + CCNA_03905 0.15 -0.9 3,539,912 - CCNA_03905 0.16 +0.5 3,539,947 + CCNA_03905 0.22 +0.7 3,539,950 - CCNA_03905 0.22 +1.7 3,540,009 + CCNA_03905 0.31 -1.6 3,540,074 - CCNA_03905 0.40 +0.1 3,540,076 + CCNA_03905 0.41 +0.3 3,540,082 + CCNA_03905 0.41 +0.5 3,540,092 + CCNA_03905 0.43 -1.4 3,540,092 + CCNA_03905 0.43 -0.8 3,540,097 + CCNA_03905 0.44 +0.7 3,540,097 + CCNA_03905 0.44 -1.4 3,540,105 - CCNA_03905 0.45 +0.1 3,540,105 - CCNA_03905 0.45 +0.4 3,540,105 - CCNA_03905 0.45 -0.6 3,540,105 - CCNA_03905 0.45 -0.5 3,540,123 - CCNA_03905 0.47 +0.5 3,540,140 - CCNA_03905 0.50 -1.1 3,540,214 - CCNA_03905 0.61 +0.6 3,540,222 + CCNA_03905 0.62 -0.1 3,540,249 + CCNA_03905 0.66 -1.3 3,540,281 - CCNA_03905 0.71 +1.0 3,540,325 + CCNA_03905 0.77 +0.2 3,540,336 + CCNA_03905 0.79 +2.3 3,540,344 - CCNA_03905 0.80 +2.0 3,540,352 + -0.3 3,540,352 + CCNA_03905 0.81 +0.4 3,540,352 + CCNA_03905 0.81 -0.9 3,540,352 + CCNA_03905 0.81 -0.6 3,540,352 + CCNA_03905 0.81 -1.9 3,540,352 + CCNA_03905 0.81 +1.5 3,540,360 - CCNA_03905 0.82 +0.1 3,540,388 - CCNA_03905 0.86 +1.2 3,540,426 - +0.7 3,540,450 + -0.8 3,540,456 + -0.1 3,540,464 - +0.2 3,540,491 + -0.9 3,540,498 + -1.5 3,540,498 + -1.0 3,540,561 - +0.2 3,540,575 + +0.7 3,540,605 - -1.0 3,540,654 - -2.3 3,540,656 - -1.1 3,540,716 - CCNA_03273 0.11 -1.2 3,540,740 - CCNA_03273 0.15 -2.4 3,540,740 - CCNA_03273 0.15 +0.5 3,540,750 - CCNA_03273 0.17 +0.9
Or see this region's nucleotide sequence