Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03360

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03359 and CCNA_03360 are separated by 166 nucleotidesCCNA_03360 and CCNA_03905 are separated by 49 nucleotidesCCNA_03905 and CCNA_03273 are separated by 161 nucleotides CCNA_03359: CCNA_03359 - phosphoglycerate kinase, at 3,537,302 to 3,538,492 _03359 CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750 _03360 CCNA_03905: CCNA_03905 - hypothetical protein, at 3,539,800 to 3,540,480 _03905 CCNA_03273: CCNA_03273 - hypothetical protein, at 3,540,642 to 3,541,286 _03273 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3538.446 kb on + strandat 3538.500 kb on - strandat 3538.514 kb on + strandat 3538.514 kb on + strandat 3538.522 kb on - strandat 3538.547 kb on + strandat 3538.562 kb on + strandat 3538.576 kb on + strandat 3538.586 kb on - strandat 3538.601 kb on - strandat 3538.601 kb on - strandat 3538.624 kb on + strandat 3539.700 kb on - strandat 3539.702 kb on + strandat 3539.738 kb on - strandat 3539.766 kb on - strandat 3539.782 kb on + strandat 3539.783 kb on + strandat 3539.783 kb on + strandat 3539.783 kb on + strandat 3539.829 kb on - strandat 3539.840 kb on + strandat 3539.848 kb on - strandat 3539.848 kb on - strandat 3539.848 kb on - strandat 3539.849 kb on - strandat 3539.869 kb on + strand, within CCNA_03905at 3539.872 kb on - strand, within CCNA_03905at 3539.874 kb on + strand, within CCNA_03905at 3539.885 kb on + strand, within CCNA_03905at 3539.890 kb on + strand, within CCNA_03905at 3539.890 kb on + strand, within CCNA_03905at 3539.893 kb on - strand, within CCNA_03905at 3539.904 kb on + strand, within CCNA_03905at 3539.912 kb on - strand, within CCNA_03905at 3539.947 kb on + strand, within CCNA_03905at 3539.950 kb on - strand, within CCNA_03905at 3540.009 kb on + strand, within CCNA_03905at 3540.074 kb on - strand, within CCNA_03905at 3540.076 kb on + strand, within CCNA_03905at 3540.082 kb on + strand, within CCNA_03905at 3540.092 kb on + strand, within CCNA_03905at 3540.092 kb on + strand, within CCNA_03905at 3540.097 kb on + strand, within CCNA_03905at 3540.097 kb on + strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.123 kb on - strand, within CCNA_03905at 3540.140 kb on - strand, within CCNA_03905at 3540.214 kb on - strand, within CCNA_03905at 3540.222 kb on + strand, within CCNA_03905at 3540.249 kb on + strand, within CCNA_03905at 3540.281 kb on - strand, within CCNA_03905at 3540.325 kb on + strand, within CCNA_03905at 3540.336 kb on + strand, within CCNA_03905at 3540.344 kb on - strand, within CCNA_03905at 3540.352 kb on + strandat 3540.352 kb on + strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.360 kb on - strand, within CCNA_03905at 3540.388 kb on - strand, within CCNA_03905at 3540.426 kb on - strandat 3540.450 kb on + strandat 3540.456 kb on + strandat 3540.464 kb on - strandat 3540.491 kb on + strandat 3540.498 kb on + strandat 3540.498 kb on + strandat 3540.561 kb on - strandat 3540.575 kb on + strandat 3540.605 kb on - strandat 3540.654 kb on - strandat 3540.656 kb on - strandat 3540.716 kb on - strand, within CCNA_03273at 3540.740 kb on - strand, within CCNA_03273at 3540.740 kb on - strand, within CCNA_03273at 3540.750 kb on - strand, within CCNA_03273

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,538,446 + +0.0
3,538,500 - -1.3
3,538,514 + +1.7
3,538,514 + +1.4
3,538,522 - -3.0
3,538,547 + +1.1
3,538,562 + +1.6
3,538,576 + +1.8
3,538,586 - -2.6
3,538,601 - +0.1
3,538,601 - -0.9
3,538,624 + +1.7
3,539,700 - -1.0
3,539,702 + +0.2
3,539,738 - +2.5
3,539,766 - +0.1
3,539,782 + +1.6
3,539,783 + +1.0
3,539,783 + +0.8
3,539,783 + +1.4
3,539,829 - +1.5
3,539,840 + +0.3
3,539,848 - +1.6
3,539,848 - +0.4
3,539,848 - +0.9
3,539,849 - -1.3
3,539,869 + CCNA_03905 0.10 +1.5
3,539,872 - CCNA_03905 0.11 +0.8
3,539,874 + CCNA_03905 0.11 +1.4
3,539,885 + CCNA_03905 0.12 +1.2
3,539,890 + CCNA_03905 0.13 +0.3
3,539,890 + CCNA_03905 0.13 -0.3
3,539,893 - CCNA_03905 0.14 +0.4
3,539,904 + CCNA_03905 0.15 -0.9
3,539,912 - CCNA_03905 0.16 +0.5
3,539,947 + CCNA_03905 0.22 +0.7
3,539,950 - CCNA_03905 0.22 +1.7
3,540,009 + CCNA_03905 0.31 -1.6
3,540,074 - CCNA_03905 0.40 +0.1
3,540,076 + CCNA_03905 0.41 +0.3
3,540,082 + CCNA_03905 0.41 +0.5
3,540,092 + CCNA_03905 0.43 -1.4
3,540,092 + CCNA_03905 0.43 -0.8
3,540,097 + CCNA_03905 0.44 +0.7
3,540,097 + CCNA_03905 0.44 -1.4
3,540,105 - CCNA_03905 0.45 +0.1
3,540,105 - CCNA_03905 0.45 +0.4
3,540,105 - CCNA_03905 0.45 -0.6
3,540,105 - CCNA_03905 0.45 -0.5
3,540,123 - CCNA_03905 0.47 +0.5
3,540,140 - CCNA_03905 0.50 -1.1
3,540,214 - CCNA_03905 0.61 +0.6
3,540,222 + CCNA_03905 0.62 -0.1
3,540,249 + CCNA_03905 0.66 -1.3
3,540,281 - CCNA_03905 0.71 +1.0
3,540,325 + CCNA_03905 0.77 +0.2
3,540,336 + CCNA_03905 0.79 +2.3
3,540,344 - CCNA_03905 0.80 +2.0
3,540,352 + -0.3
3,540,352 + CCNA_03905 0.81 +0.4
3,540,352 + CCNA_03905 0.81 -0.9
3,540,352 + CCNA_03905 0.81 -0.6
3,540,352 + CCNA_03905 0.81 -1.9
3,540,352 + CCNA_03905 0.81 +1.5
3,540,360 - CCNA_03905 0.82 +0.1
3,540,388 - CCNA_03905 0.86 +1.2
3,540,426 - +0.7
3,540,450 + -0.8
3,540,456 + -0.1
3,540,464 - +0.2
3,540,491 + -0.9
3,540,498 + -1.5
3,540,498 + -1.0
3,540,561 - +0.2
3,540,575 + +0.7
3,540,605 - -1.0
3,540,654 - -2.3
3,540,656 - -1.1
3,540,716 - CCNA_03273 0.11 -1.2
3,540,740 - CCNA_03273 0.15 -2.4
3,540,740 - CCNA_03273 0.15 +0.5
3,540,750 - CCNA_03273 0.17 +0.9

Or see this region's nucleotide sequence