Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03328 and CCNA_03329 are separated by 35 nucleotides CCNA_03329 and CCNA_03330 overlap by 61 nucleotides CCNA_03330 and CCNA_03331 overlap by 4 nucleotides CCNA_03331 and CCNA_03332 are separated by 52 nucleotides CCNA_03332 and CCNA_03333 are separated by 10 nucleotides
CCNA_03328: CCNA_03328 - PhzC/PhzF-family epimerase, at 3,509,078 to 3,509,905
_03328
CCNA_03329: CCNA_03329 - hypothetical protein, at 3,509,941 to 3,510,057
_03329
CCNA_03330: CCNA_03330 - hypothetical protein, at 3,509,997 to 3,510,581
_03330
CCNA_03331: CCNA_03331 - phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase, at 3,510,578 to 3,511,381
_03331
CCNA_03332: CCNA_03332 - dihydropteroate synthase, at 3,511,434 to 3,512,258
_03332
CCNA_03333: CCNA_03333 - PAS-family sensor histidine kinase, at 3,512,269 to 3,514,662
_03333
Position (kb)
3510
3511
3512 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3509.640 kb on + strand, within CCNA_03328 at 3509.713 kb on + strand, within CCNA_03328 at 3509.728 kb on + strand, within CCNA_03328 at 3509.728 kb on + strand, within CCNA_03328 at 3509.728 kb on + strand, within CCNA_03328 at 3509.731 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand at 3509.736 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand, within CCNA_03328 at 3509.736 kb on - strand, within CCNA_03328 at 3509.787 kb on - strand, within CCNA_03328 at 3509.806 kb on - strand, within CCNA_03328 at 3509.839 kb on + strand at 3509.857 kb on - strand at 3509.867 kb on - strand at 3509.877 kb on - strand at 3509.884 kb on + strand at 3509.899 kb on + strand at 3509.899 kb on + strand at 3509.935 kb on - strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.940 kb on + strand at 3509.948 kb on - strand at 3509.948 kb on - strand at 3509.948 kb on - strand at 3509.948 kb on - strand at 3509.948 kb on - strand at 3509.950 kb on + strand at 3509.950 kb on + strand at 3510.116 kb on - strand, within CCNA_03330 at 3510.135 kb on + strand, within CCNA_03330 at 3510.143 kb on - strand, within CCNA_03330 at 3510.162 kb on + strand, within CCNA_03330 at 3510.272 kb on - strand, within CCNA_03330 at 3510.287 kb on - strand, within CCNA_03330 at 3510.293 kb on + strand, within CCNA_03330 at 3510.296 kb on + strand, within CCNA_03330 at 3510.337 kb on + strand, within CCNA_03330 at 3510.362 kb on + strand, within CCNA_03330 at 3510.397 kb on + strand, within CCNA_03330 at 3510.412 kb on - strand, within CCNA_03330 at 3510.441 kb on + strand, within CCNA_03330 at 3510.461 kb on - strand, within CCNA_03330 at 3510.510 kb on + strand, within CCNA_03330 at 3510.516 kb on - strand, within CCNA_03330 at 3510.516 kb on - strand, within CCNA_03330 at 3510.571 kb on - strand at 3510.591 kb on + strand at 3510.599 kb on - strand at 3510.599 kb on - strand at 3510.604 kb on - strand at 3511.371 kb on + strand at 3511.431 kb on + strand at 3511.431 kb on + strand at 3511.439 kb on - strand at 3511.439 kb on - strand at 3511.440 kb on - strand at 3512.253 kb on + strand at 3512.260 kb on + strand at 3512.266 kb on + strand at 3512.267 kb on + strand at 3512.267 kb on + strand at 3512.267 kb on + strand at 3512.268 kb on - strand at 3512.275 kb on - strand at 3512.283 kb on + strand at 3512.288 kb on + strand at 3512.291 kb on - strand at 3512.318 kb on + strand at 3512.324 kb on - strand at 3512.331 kb on - strand at 3512.337 kb on + strand at 3512.364 kb on + strand at 3512.365 kb on + strand at 3512.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 3,509,640 + CCNA_03328 0.68 -1.7 3,509,713 + CCNA_03328 0.77 -1.7 3,509,728 + CCNA_03328 0.79 -1.4 3,509,728 + CCNA_03328 0.79 -1.3 3,509,728 + CCNA_03328 0.79 +0.5 3,509,731 - CCNA_03328 0.79 -2.0 3,509,736 - CCNA_03328 0.79 +0.2 3,509,736 - -0.3 3,509,736 - CCNA_03328 0.79 +0.7 3,509,736 - CCNA_03328 0.79 -0.0 3,509,736 - CCNA_03328 0.79 -0.2 3,509,736 - CCNA_03328 0.79 -0.3 3,509,736 - CCNA_03328 0.79 -1.7 3,509,787 - CCNA_03328 0.86 +0.2 3,509,806 - CCNA_03328 0.88 +0.4 3,509,839 + +0.0 3,509,857 - +0.3 3,509,867 - +0.7 3,509,877 - -0.5 3,509,884 + -2.1 3,509,899 + -1.5 3,509,899 + -2.5 3,509,935 - +0.3 3,509,940 + -1.2 3,509,940 + -2.2 3,509,940 + -0.3 3,509,940 + -1.0 3,509,940 + -2.8 3,509,940 + -1.5 3,509,940 + -1.7 3,509,940 + -1.0 3,509,948 - +0.6 3,509,948 - +1.5 3,509,948 - +0.7 3,509,948 - +1.3 3,509,948 - -0.2 3,509,950 + -1.4 3,509,950 + -0.9 3,510,116 - CCNA_03330 0.20 +0.6 3,510,135 + CCNA_03330 0.24 -2.3 3,510,143 - CCNA_03330 0.25 +0.6 3,510,162 + CCNA_03330 0.28 +0.9 3,510,272 - CCNA_03330 0.47 +1.9 3,510,287 - CCNA_03330 0.50 -0.2 3,510,293 + CCNA_03330 0.51 -1.7 3,510,296 + CCNA_03330 0.51 +0.9 3,510,337 + CCNA_03330 0.58 -1.0 3,510,362 + CCNA_03330 0.62 -2.6 3,510,397 + CCNA_03330 0.68 -0.6 3,510,412 - CCNA_03330 0.71 +0.7 3,510,441 + CCNA_03330 0.76 +1.5 3,510,461 - CCNA_03330 0.79 +1.0 3,510,510 + CCNA_03330 0.88 -2.3 3,510,516 - CCNA_03330 0.89 -0.3 3,510,516 - CCNA_03330 0.89 -0.3 3,510,571 - +0.9 3,510,591 + -1.2 3,510,599 - +0.1 3,510,599 - +1.1 3,510,604 - +1.8 3,511,371 + -1.0 3,511,431 + -1.6 3,511,431 + -0.9 3,511,439 - -0.2 3,511,439 - -0.2 3,511,440 - +0.2 3,512,253 + -0.5 3,512,260 + -1.7 3,512,266 + -1.4 3,512,267 + -0.8 3,512,267 + -2.3 3,512,267 + -0.9 3,512,268 - +1.2 3,512,275 - +0.1 3,512,283 + -1.5 3,512,288 + -0.5 3,512,291 - +1.2 3,512,318 + +0.2 3,512,324 - -1.2 3,512,331 - -0.3 3,512,337 + -0.2 3,512,364 + -0.9 3,512,365 + -0.7 3,512,373 - -0.5
Or see this region's nucleotide sequence