Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03331

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03328 and CCNA_03329 are separated by 35 nucleotidesCCNA_03329 and CCNA_03330 overlap by 61 nucleotidesCCNA_03330 and CCNA_03331 overlap by 4 nucleotidesCCNA_03331 and CCNA_03332 are separated by 52 nucleotidesCCNA_03332 and CCNA_03333 are separated by 10 nucleotides CCNA_03328: CCNA_03328 - PhzC/PhzF-family epimerase, at 3,509,078 to 3,509,905 _03328 CCNA_03329: CCNA_03329 - hypothetical protein, at 3,509,941 to 3,510,057 _03329 CCNA_03330: CCNA_03330 - hypothetical protein, at 3,509,997 to 3,510,581 _03330 CCNA_03331: CCNA_03331 - phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase, at 3,510,578 to 3,511,381 _03331 CCNA_03332: CCNA_03332 - dihydropteroate synthase, at 3,511,434 to 3,512,258 _03332 CCNA_03333: CCNA_03333 - PAS-family sensor histidine kinase, at 3,512,269 to 3,514,662 _03333 Position (kb) 3510 3511 3512Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3509.640 kb on + strand, within CCNA_03328at 3509.713 kb on + strand, within CCNA_03328at 3509.728 kb on + strand, within CCNA_03328at 3509.728 kb on + strand, within CCNA_03328at 3509.728 kb on + strand, within CCNA_03328at 3509.731 kb on - strand, within CCNA_03328at 3509.736 kb on - strand, within CCNA_03328at 3509.736 kb on - strandat 3509.736 kb on - strand, within CCNA_03328at 3509.736 kb on - strand, within CCNA_03328at 3509.736 kb on - strand, within CCNA_03328at 3509.736 kb on - strand, within CCNA_03328at 3509.736 kb on - strand, within CCNA_03328at 3509.787 kb on - strand, within CCNA_03328at 3509.806 kb on - strand, within CCNA_03328at 3509.839 kb on + strandat 3509.857 kb on - strandat 3509.867 kb on - strandat 3509.877 kb on - strandat 3509.884 kb on + strandat 3509.899 kb on + strandat 3509.899 kb on + strandat 3509.935 kb on - strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.940 kb on + strandat 3509.948 kb on - strandat 3509.948 kb on - strandat 3509.948 kb on - strandat 3509.948 kb on - strandat 3509.948 kb on - strandat 3509.950 kb on + strandat 3509.950 kb on + strandat 3510.116 kb on - strand, within CCNA_03330at 3510.135 kb on + strand, within CCNA_03330at 3510.143 kb on - strand, within CCNA_03330at 3510.162 kb on + strand, within CCNA_03330at 3510.272 kb on - strand, within CCNA_03330at 3510.287 kb on - strand, within CCNA_03330at 3510.293 kb on + strand, within CCNA_03330at 3510.296 kb on + strand, within CCNA_03330at 3510.337 kb on + strand, within CCNA_03330at 3510.362 kb on + strand, within CCNA_03330at 3510.397 kb on + strand, within CCNA_03330at 3510.412 kb on - strand, within CCNA_03330at 3510.441 kb on + strand, within CCNA_03330at 3510.461 kb on - strand, within CCNA_03330at 3510.510 kb on + strand, within CCNA_03330at 3510.516 kb on - strand, within CCNA_03330at 3510.516 kb on - strand, within CCNA_03330at 3510.571 kb on - strandat 3510.591 kb on + strandat 3510.599 kb on - strandat 3510.599 kb on - strandat 3510.604 kb on - strandat 3511.371 kb on + strandat 3511.431 kb on + strandat 3511.431 kb on + strandat 3511.439 kb on - strandat 3511.439 kb on - strandat 3511.440 kb on - strandat 3512.253 kb on + strandat 3512.260 kb on + strandat 3512.266 kb on + strandat 3512.267 kb on + strandat 3512.267 kb on + strandat 3512.267 kb on + strandat 3512.268 kb on - strandat 3512.275 kb on - strandat 3512.283 kb on + strandat 3512.288 kb on + strandat 3512.291 kb on - strandat 3512.318 kb on + strandat 3512.324 kb on - strandat 3512.331 kb on - strandat 3512.337 kb on + strandat 3512.364 kb on + strandat 3512.365 kb on + strandat 3512.373 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,509,640 + CCNA_03328 0.68 -1.7
3,509,713 + CCNA_03328 0.77 -1.7
3,509,728 + CCNA_03328 0.79 -1.4
3,509,728 + CCNA_03328 0.79 -1.3
3,509,728 + CCNA_03328 0.79 +0.5
3,509,731 - CCNA_03328 0.79 -2.0
3,509,736 - CCNA_03328 0.79 +0.2
3,509,736 - -0.3
3,509,736 - CCNA_03328 0.79 +0.7
3,509,736 - CCNA_03328 0.79 -0.0
3,509,736 - CCNA_03328 0.79 -0.2
3,509,736 - CCNA_03328 0.79 -0.3
3,509,736 - CCNA_03328 0.79 -1.7
3,509,787 - CCNA_03328 0.86 +0.2
3,509,806 - CCNA_03328 0.88 +0.4
3,509,839 + +0.0
3,509,857 - +0.3
3,509,867 - +0.7
3,509,877 - -0.5
3,509,884 + -2.1
3,509,899 + -1.5
3,509,899 + -2.5
3,509,935 - +0.3
3,509,940 + -1.2
3,509,940 + -2.2
3,509,940 + -0.3
3,509,940 + -1.0
3,509,940 + -2.8
3,509,940 + -1.5
3,509,940 + -1.7
3,509,940 + -1.0
3,509,948 - +0.6
3,509,948 - +1.5
3,509,948 - +0.7
3,509,948 - +1.3
3,509,948 - -0.2
3,509,950 + -1.4
3,509,950 + -0.9
3,510,116 - CCNA_03330 0.20 +0.6
3,510,135 + CCNA_03330 0.24 -2.3
3,510,143 - CCNA_03330 0.25 +0.6
3,510,162 + CCNA_03330 0.28 +0.9
3,510,272 - CCNA_03330 0.47 +1.9
3,510,287 - CCNA_03330 0.50 -0.2
3,510,293 + CCNA_03330 0.51 -1.7
3,510,296 + CCNA_03330 0.51 +0.9
3,510,337 + CCNA_03330 0.58 -1.0
3,510,362 + CCNA_03330 0.62 -2.6
3,510,397 + CCNA_03330 0.68 -0.6
3,510,412 - CCNA_03330 0.71 +0.7
3,510,441 + CCNA_03330 0.76 +1.5
3,510,461 - CCNA_03330 0.79 +1.0
3,510,510 + CCNA_03330 0.88 -2.3
3,510,516 - CCNA_03330 0.89 -0.3
3,510,516 - CCNA_03330 0.89 -0.3
3,510,571 - +0.9
3,510,591 + -1.2
3,510,599 - +0.1
3,510,599 - +1.1
3,510,604 - +1.8
3,511,371 + -1.0
3,511,431 + -1.6
3,511,431 + -0.9
3,511,439 - -0.2
3,511,439 - -0.2
3,511,440 - +0.2
3,512,253 + -0.5
3,512,260 + -1.7
3,512,266 + -1.4
3,512,267 + -0.8
3,512,267 + -2.3
3,512,267 + -0.9
3,512,268 - +1.2
3,512,275 - +0.1
3,512,283 + -1.5
3,512,288 + -0.5
3,512,291 - +1.2
3,512,318 + +0.2
3,512,324 - -1.2
3,512,331 - -0.3
3,512,337 + -0.2
3,512,364 + -0.9
3,512,365 + -0.7
3,512,373 - -0.5

Or see this region's nucleotide sequence