Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02814

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02811 and CCNA_02812 are separated by 161 nucleotidesCCNA_02812 and CCNA_02813 overlap by 4 nucleotidesCCNA_02813 and CCNA_02814 overlap by 4 nucleotidesCCNA_02814 and CCNA_02815 are separated by 52 nucleotides CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657 _02811 CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106 _02812 CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537 _02813 CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514 _02814 CCNA_02815: CCNA_02815 - ice nucleation protein, at 2,971,567 to 2,973,531 _02815 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2969.537 kb on + strandat 2969.574 kb on + strandat 2969.577 kb on - strandat 2969.619 kb on + strandat 2969.620 kb on - strandat 2969.620 kb on - strandat 2969.627 kb on - strandat 2969.635 kb on - strandat 2969.677 kb on + strandat 2969.698 kb on + strandat 2969.714 kb on + strandat 2969.714 kb on + strandat 2969.714 kb on + strandat 2969.722 kb on - strandat 2969.722 kb on - strandat 2969.722 kb on - strandat 2969.722 kb on - strandat 2969.739 kb on + strandat 2969.758 kb on - strandat 2969.817 kb on + strandat 2969.856 kb on + strand, within CCNA_02812at 2969.863 kb on - strand, within CCNA_02812at 2969.864 kb on - strand, within CCNA_02812at 2969.868 kb on + strand, within CCNA_02812at 2969.873 kb on + strand, within CCNA_02812at 2969.900 kb on + strand, within CCNA_02812at 2969.908 kb on - strand, within CCNA_02812at 2969.916 kb on - strand, within CCNA_02812at 2969.952 kb on + strand, within CCNA_02812at 2969.959 kb on - strandat 2969.970 kb on - strand, within CCNA_02812at 2969.990 kb on + strand, within CCNA_02812at 2970.025 kb on + strand, within CCNA_02812at 2970.034 kb on + strand, within CCNA_02812at 2970.046 kb on + strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.056 kb on + strand, within CCNA_02812at 2970.061 kb on + strand, within CCNA_02812at 2970.064 kb on - strand, within CCNA_02812at 2970.064 kb on - strand, within CCNA_02812at 2970.074 kb on - strand, within CCNA_02812at 2970.109 kb on - strandat 2970.122 kb on - strandat 2970.122 kb on - strandat 2971.598 kb on + strandat 2971.606 kb on - strandat 2971.606 kb on - strandat 2971.612 kb on + strandat 2971.638 kb on + strandat 2971.638 kb on + strandat 2971.638 kb on + strandat 2971.638 kb on + strandat 2971.638 kb on + strandat 2971.646 kb on - strandat 2971.661 kb on + strandat 2971.662 kb on - strandat 2971.672 kb on + strandat 2971.679 kb on - strandat 2971.679 kb on - strandat 2971.680 kb on - strandat 2971.680 kb on - strandat 2971.718 kb on - strandat 2971.754 kb on + strandat 2971.754 kb on + strandat 2971.766 kb on + strand, within CCNA_02815at 2971.766 kb on + strand, within CCNA_02815at 2971.774 kb on - strand, within CCNA_02815at 2971.774 kb on - strand, within CCNA_02815at 2971.803 kb on - strand, within CCNA_02815at 2971.827 kb on - strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.912 kb on + strand, within CCNA_02815at 2971.920 kb on - strand, within CCNA_02815at 2971.920 kb on - strand, within CCNA_02815at 2971.920 kb on - strand, within CCNA_02815at 2971.920 kb on - strand, within CCNA_02815at 2971.920 kb on - strand, within CCNA_02815at 2971.934 kb on + strand, within CCNA_02815at 2971.935 kb on - strand, within CCNA_02815at 2971.951 kb on + strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.959 kb on - strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.961 kb on + strand, within CCNA_02815at 2971.964 kb on - strand, within CCNA_02815at 2971.969 kb on - strandat 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2971.969 kb on - strand, within CCNA_02815at 2972.010 kb on + strand, within CCNA_02815at 2972.010 kb on + strand, within CCNA_02815at 2972.018 kb on - strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.033 kb on + strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.041 kb on - strand, within CCNA_02815at 2972.051 kb on - strand, within CCNA_02815at 2972.107 kb on + strand, within CCNA_02815at 2972.115 kb on - strand, within CCNA_02815at 2972.124 kb on - strand, within CCNA_02815at 2972.137 kb on - strand, within CCNA_02815at 2972.170 kb on - strand, within CCNA_02815at 2972.196 kb on - strand, within CCNA_02815at 2972.245 kb on + strand, within CCNA_02815at 2972.245 kb on + strand, within CCNA_02815at 2972.252 kb on + strand, within CCNA_02815at 2972.276 kb on + strand, within CCNA_02815at 2972.284 kb on - strand, within CCNA_02815at 2972.284 kb on - strand, within CCNA_02815at 2972.342 kb on - strand, within CCNA_02815at 2972.356 kb on - strand, within CCNA_02815at 2972.363 kb on + strand, within CCNA_02815at 2972.388 kb on - strand, within CCNA_02815at 2972.435 kb on - strand, within CCNA_02815at 2972.437 kb on + strand, within CCNA_02815at 2972.444 kb on + strand, within CCNA_02815at 2972.445 kb on - strand, within CCNA_02815at 2972.452 kb on - strand, within CCNA_02815at 2972.459 kb on + strand, within CCNA_02815at 2972.459 kb on + strand, within CCNA_02815at 2972.459 kb on + strand, within CCNA_02815at 2972.467 kb on - strand, within CCNA_02815at 2972.491 kb on - strand, within CCNA_02815at 2972.507 kb on + strand, within CCNA_02815at 2972.507 kb on + strand, within CCNA_02815at 2972.507 kb on + strand, within CCNA_02815at 2972.510 kb on - strand, within CCNA_02815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
2,969,537 + +1.8
2,969,574 + +0.1
2,969,577 - -1.3
2,969,619 + +0.7
2,969,620 - -1.2
2,969,620 - -1.6
2,969,627 - -0.4
2,969,635 - -1.3
2,969,677 + +0.3
2,969,698 + +0.5
2,969,714 + +0.6
2,969,714 + +0.7
2,969,714 + +0.5
2,969,722 - -1.5
2,969,722 - +1.0
2,969,722 - -2.4
2,969,722 - -0.7
2,969,739 + -0.0
2,969,758 - -1.1
2,969,817 + +0.7
2,969,856 + CCNA_02812 0.13 +0.0
2,969,863 - CCNA_02812 0.15 -0.6
2,969,864 - CCNA_02812 0.16 +0.2
2,969,868 + CCNA_02812 0.17 -0.5
2,969,873 + CCNA_02812 0.19 +0.0
2,969,900 + CCNA_02812 0.28 +0.6
2,969,908 - CCNA_02812 0.31 -1.5
2,969,916 - CCNA_02812 0.34 +0.2
2,969,952 + CCNA_02812 0.46 -0.6
2,969,959 - +2.0
2,969,970 - CCNA_02812 0.52 -0.0
2,969,990 + CCNA_02812 0.59 +1.0
2,970,025 + CCNA_02812 0.72 +1.8
2,970,034 + CCNA_02812 0.75 +0.1
2,970,046 + CCNA_02812 0.79 +1.8
2,970,056 + CCNA_02812 0.82 -0.5
2,970,056 + CCNA_02812 0.82 +0.7
2,970,056 + CCNA_02812 0.82 +1.4
2,970,056 + CCNA_02812 0.82 +1.2
2,970,061 + CCNA_02812 0.84 -0.2
2,970,064 - CCNA_02812 0.85 -1.5
2,970,064 - CCNA_02812 0.85 -1.9
2,970,074 - CCNA_02812 0.89 -2.2
2,970,109 - -1.0
2,970,122 - -0.7
2,970,122 - +1.5
2,971,598 + +0.5
2,971,606 - +0.6
2,971,606 - +0.2
2,971,612 + -0.3
2,971,638 + +0.4
2,971,638 + +1.7
2,971,638 + +1.0
2,971,638 + +1.0
2,971,638 + +0.1
2,971,646 - -1.0
2,971,661 + -0.3
2,971,662 - +1.9
2,971,672 + +0.9
2,971,679 - -0.8
2,971,679 - +1.0
2,971,680 - -0.1
2,971,680 - +0.8
2,971,718 - +0.0
2,971,754 + -0.9
2,971,754 + -0.8
2,971,766 + CCNA_02815 0.10 +0.7
2,971,766 + CCNA_02815 0.10 -1.1
2,971,774 - CCNA_02815 0.11 +1.8
2,971,774 - CCNA_02815 0.11 -1.1
2,971,803 - CCNA_02815 0.12 -0.3
2,971,827 - CCNA_02815 0.13 +1.0
2,971,912 + CCNA_02815 0.18 -0.7
2,971,912 + CCNA_02815 0.18 -0.2
2,971,912 + CCNA_02815 0.18 -0.3
2,971,912 + CCNA_02815 0.18 +1.2
2,971,920 - CCNA_02815 0.18 -0.7
2,971,920 - CCNA_02815 0.18 -0.0
2,971,920 - CCNA_02815 0.18 +1.1
2,971,920 - CCNA_02815 0.18 +1.9
2,971,920 - CCNA_02815 0.18 +0.2
2,971,934 + CCNA_02815 0.19 +0.7
2,971,935 - CCNA_02815 0.19 -1.0
2,971,951 + CCNA_02815 0.20 -3.2
2,971,959 - CCNA_02815 0.20 -2.0
2,971,959 - CCNA_02815 0.20 -0.3
2,971,959 - CCNA_02815 0.20 +0.2
2,971,959 - CCNA_02815 0.20 -0.9
2,971,959 - CCNA_02815 0.20 +0.9
2,971,961 + CCNA_02815 0.20 -1.9
2,971,961 + CCNA_02815 0.20 -1.2
2,971,961 + CCNA_02815 0.20 -1.2
2,971,961 + CCNA_02815 0.20 -0.8
2,971,964 - CCNA_02815 0.20 +0.3
2,971,969 - +1.8
2,971,969 - CCNA_02815 0.20 +0.0
2,971,969 - CCNA_02815 0.20 +1.3
2,971,969 - CCNA_02815 0.20 -0.0
2,971,969 - CCNA_02815 0.20 -0.5
2,971,969 - CCNA_02815 0.20 -1.6
2,972,010 + CCNA_02815 0.23 +0.5
2,972,010 + CCNA_02815 0.23 +0.3
2,972,018 - CCNA_02815 0.23 +0.3
2,972,033 + CCNA_02815 0.24 -1.8
2,972,033 + CCNA_02815 0.24 -2.1
2,972,033 + CCNA_02815 0.24 +0.7
2,972,033 + CCNA_02815 0.24 +1.8
2,972,033 + CCNA_02815 0.24 +0.2
2,972,033 + CCNA_02815 0.24 -0.2
2,972,041 - CCNA_02815 0.24 -0.1
2,972,041 - CCNA_02815 0.24 -1.8
2,972,041 - CCNA_02815 0.24 -0.0
2,972,041 - CCNA_02815 0.24 -0.5
2,972,041 - CCNA_02815 0.24 +0.7
2,972,051 - CCNA_02815 0.25 +1.2
2,972,107 + CCNA_02815 0.27 -1.6
2,972,115 - CCNA_02815 0.28 +1.1
2,972,124 - CCNA_02815 0.28 +0.2
2,972,137 - CCNA_02815 0.29 +1.5
2,972,170 - CCNA_02815 0.31 +0.2
2,972,196 - CCNA_02815 0.32 -0.7
2,972,245 + CCNA_02815 0.35 +1.0
2,972,245 + CCNA_02815 0.35 +1.2
2,972,252 + CCNA_02815 0.35 -0.2
2,972,276 + CCNA_02815 0.36 +0.3
2,972,284 - CCNA_02815 0.36 -2.1
2,972,284 - CCNA_02815 0.36 -0.7
2,972,342 - CCNA_02815 0.39 -0.2
2,972,356 - CCNA_02815 0.40 -0.8
2,972,363 + CCNA_02815 0.41 +0.0
2,972,388 - CCNA_02815 0.42 +0.3
2,972,435 - CCNA_02815 0.44 +1.3
2,972,437 + CCNA_02815 0.44 -1.1
2,972,444 + CCNA_02815 0.45 -2.4
2,972,445 - CCNA_02815 0.45 +0.5
2,972,452 - CCNA_02815 0.45 -1.5
2,972,459 + CCNA_02815 0.45 -1.2
2,972,459 + CCNA_02815 0.45 -1.3
2,972,459 + CCNA_02815 0.45 +0.7
2,972,467 - CCNA_02815 0.46 +1.7
2,972,491 - CCNA_02815 0.47 -0.0
2,972,507 + CCNA_02815 0.48 -0.6
2,972,507 + CCNA_02815 0.48 +0.9
2,972,507 + CCNA_02815 0.48 +0.9
2,972,510 - CCNA_02815 0.48 -0.5

Or see this region's nucleotide sequence