Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02811 and CCNA_02812 are separated by 161 nucleotides CCNA_02812 and CCNA_02813 overlap by 4 nucleotides CCNA_02813 and CCNA_02814 overlap by 4 nucleotides CCNA_02814 and CCNA_02815 are separated by 52 nucleotides
CCNA_02811: CCNA_02811 - heavy metal translocating P-type ATPase, at 2,967,624 to 2,969,657
_02811
CCNA_02812: CCNA_02812 - glutaredoxin, at 2,969,819 to 2,970,106
_02812
CCNA_02813: CCNA_02813 - transposase, at 2,970,103 to 2,970,537
_02813
CCNA_02814: CCNA_02814 - transposase, at 2,970,534 to 2,971,514
_02814
CCNA_02815: CCNA_02815 - ice nucleation protein, at 2,971,567 to 2,973,531
_02815
Position (kb)
2970
2971
2972 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2969.537 kb on + strand at 2969.574 kb on + strand at 2969.577 kb on - strand at 2969.619 kb on + strand at 2969.620 kb on - strand at 2969.620 kb on - strand at 2969.627 kb on - strand at 2969.635 kb on - strand at 2969.677 kb on + strand at 2969.698 kb on + strand at 2969.714 kb on + strand at 2969.714 kb on + strand at 2969.714 kb on + strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.722 kb on - strand at 2969.739 kb on + strand at 2969.758 kb on - strand at 2969.817 kb on + strand at 2969.856 kb on + strand, within CCNA_02812 at 2969.863 kb on - strand, within CCNA_02812 at 2969.864 kb on - strand, within CCNA_02812 at 2969.868 kb on + strand, within CCNA_02812 at 2969.873 kb on + strand, within CCNA_02812 at 2969.900 kb on + strand, within CCNA_02812 at 2969.908 kb on - strand, within CCNA_02812 at 2969.916 kb on - strand, within CCNA_02812 at 2969.952 kb on + strand, within CCNA_02812 at 2969.959 kb on - strand at 2969.970 kb on - strand, within CCNA_02812 at 2969.990 kb on + strand, within CCNA_02812 at 2970.025 kb on + strand, within CCNA_02812 at 2970.034 kb on + strand, within CCNA_02812 at 2970.046 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.056 kb on + strand, within CCNA_02812 at 2970.061 kb on + strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.064 kb on - strand, within CCNA_02812 at 2970.074 kb on - strand, within CCNA_02812 at 2970.109 kb on - strand at 2970.122 kb on - strand at 2970.122 kb on - strand at 2971.598 kb on + strand at 2971.606 kb on - strand at 2971.606 kb on - strand at 2971.612 kb on + strand at 2971.638 kb on + strand at 2971.638 kb on + strand at 2971.638 kb on + strand at 2971.638 kb on + strand at 2971.638 kb on + strand at 2971.646 kb on - strand at 2971.661 kb on + strand at 2971.662 kb on - strand at 2971.672 kb on + strand at 2971.679 kb on - strand at 2971.679 kb on - strand at 2971.680 kb on - strand at 2971.680 kb on - strand at 2971.718 kb on - strand at 2971.754 kb on + strand at 2971.754 kb on + strand at 2971.766 kb on + strand, within CCNA_02815 at 2971.766 kb on + strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.774 kb on - strand, within CCNA_02815 at 2971.803 kb on - strand, within CCNA_02815 at 2971.827 kb on - strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.912 kb on + strand, within CCNA_02815 at 2971.920 kb on - strand, within CCNA_02815 at 2971.920 kb on - strand, within CCNA_02815 at 2971.920 kb on - strand, within CCNA_02815 at 2971.920 kb on - strand, within CCNA_02815 at 2971.920 kb on - strand, within CCNA_02815 at 2971.934 kb on + strand, within CCNA_02815 at 2971.935 kb on - strand, within CCNA_02815 at 2971.951 kb on + strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.959 kb on - strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.961 kb on + strand, within CCNA_02815 at 2971.964 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2971.969 kb on - strand, within CCNA_02815 at 2972.010 kb on + strand, within CCNA_02815 at 2972.010 kb on + strand, within CCNA_02815 at 2972.018 kb on - strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.033 kb on + strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.041 kb on - strand, within CCNA_02815 at 2972.051 kb on - strand, within CCNA_02815 at 2972.107 kb on + strand, within CCNA_02815 at 2972.115 kb on - strand, within CCNA_02815 at 2972.124 kb on - strand, within CCNA_02815 at 2972.137 kb on - strand, within CCNA_02815 at 2972.170 kb on - strand, within CCNA_02815 at 2972.196 kb on - strand, within CCNA_02815 at 2972.245 kb on + strand, within CCNA_02815 at 2972.245 kb on + strand, within CCNA_02815 at 2972.252 kb on + strand, within CCNA_02815 at 2972.276 kb on + strand, within CCNA_02815 at 2972.284 kb on - strand, within CCNA_02815 at 2972.284 kb on - strand, within CCNA_02815 at 2972.342 kb on - strand, within CCNA_02815 at 2972.356 kb on - strand, within CCNA_02815 at 2972.363 kb on + strand, within CCNA_02815 at 2972.388 kb on - strand, within CCNA_02815 at 2972.435 kb on - strand, within CCNA_02815 at 2972.437 kb on + strand, within CCNA_02815 at 2972.444 kb on + strand, within CCNA_02815 at 2972.445 kb on - strand, within CCNA_02815 at 2972.452 kb on - strand, within CCNA_02815 at 2972.459 kb on + strand, within CCNA_02815 at 2972.459 kb on + strand, within CCNA_02815 at 2972.459 kb on + strand, within CCNA_02815 at 2972.467 kb on - strand, within CCNA_02815 at 2972.491 kb on - strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815 at 2972.507 kb on + strand, within CCNA_02815 at 2972.510 kb on - strand, within CCNA_02815
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,969,537 + +1.8 2,969,574 + +0.1 2,969,577 - -1.3 2,969,619 + +0.7 2,969,620 - -1.2 2,969,620 - -1.6 2,969,627 - -0.4 2,969,635 - -1.3 2,969,677 + +0.3 2,969,698 + +0.5 2,969,714 + +0.6 2,969,714 + +0.7 2,969,714 + +0.5 2,969,722 - -1.5 2,969,722 - +1.0 2,969,722 - -2.4 2,969,722 - -0.7 2,969,739 + -0.0 2,969,758 - -1.1 2,969,817 + +0.7 2,969,856 + CCNA_02812 0.13 +0.0 2,969,863 - CCNA_02812 0.15 -0.6 2,969,864 - CCNA_02812 0.16 +0.2 2,969,868 + CCNA_02812 0.17 -0.5 2,969,873 + CCNA_02812 0.19 +0.0 2,969,900 + CCNA_02812 0.28 +0.6 2,969,908 - CCNA_02812 0.31 -1.5 2,969,916 - CCNA_02812 0.34 +0.2 2,969,952 + CCNA_02812 0.46 -0.6 2,969,959 - +2.0 2,969,970 - CCNA_02812 0.52 -0.0 2,969,990 + CCNA_02812 0.59 +1.0 2,970,025 + CCNA_02812 0.72 +1.8 2,970,034 + CCNA_02812 0.75 +0.1 2,970,046 + CCNA_02812 0.79 +1.8 2,970,056 + CCNA_02812 0.82 -0.5 2,970,056 + CCNA_02812 0.82 +0.7 2,970,056 + CCNA_02812 0.82 +1.4 2,970,056 + CCNA_02812 0.82 +1.2 2,970,061 + CCNA_02812 0.84 -0.2 2,970,064 - CCNA_02812 0.85 -1.5 2,970,064 - CCNA_02812 0.85 -1.9 2,970,074 - CCNA_02812 0.89 -2.2 2,970,109 - -1.0 2,970,122 - -0.7 2,970,122 - +1.5 2,971,598 + +0.5 2,971,606 - +0.6 2,971,606 - +0.2 2,971,612 + -0.3 2,971,638 + +0.4 2,971,638 + +1.7 2,971,638 + +1.0 2,971,638 + +1.0 2,971,638 + +0.1 2,971,646 - -1.0 2,971,661 + -0.3 2,971,662 - +1.9 2,971,672 + +0.9 2,971,679 - -0.8 2,971,679 - +1.0 2,971,680 - -0.1 2,971,680 - +0.8 2,971,718 - +0.0 2,971,754 + -0.9 2,971,754 + -0.8 2,971,766 + CCNA_02815 0.10 +0.7 2,971,766 + CCNA_02815 0.10 -1.1 2,971,774 - CCNA_02815 0.11 +1.8 2,971,774 - CCNA_02815 0.11 -1.1 2,971,803 - CCNA_02815 0.12 -0.3 2,971,827 - CCNA_02815 0.13 +1.0 2,971,912 + CCNA_02815 0.18 -0.7 2,971,912 + CCNA_02815 0.18 -0.2 2,971,912 + CCNA_02815 0.18 -0.3 2,971,912 + CCNA_02815 0.18 +1.2 2,971,920 - CCNA_02815 0.18 -0.7 2,971,920 - CCNA_02815 0.18 -0.0 2,971,920 - CCNA_02815 0.18 +1.1 2,971,920 - CCNA_02815 0.18 +1.9 2,971,920 - CCNA_02815 0.18 +0.2 2,971,934 + CCNA_02815 0.19 +0.7 2,971,935 - CCNA_02815 0.19 -1.0 2,971,951 + CCNA_02815 0.20 -3.2 2,971,959 - CCNA_02815 0.20 -2.0 2,971,959 - CCNA_02815 0.20 -0.3 2,971,959 - CCNA_02815 0.20 +0.2 2,971,959 - CCNA_02815 0.20 -0.9 2,971,959 - CCNA_02815 0.20 +0.9 2,971,961 + CCNA_02815 0.20 -1.9 2,971,961 + CCNA_02815 0.20 -1.2 2,971,961 + CCNA_02815 0.20 -1.2 2,971,961 + CCNA_02815 0.20 -0.8 2,971,964 - CCNA_02815 0.20 +0.3 2,971,969 - +1.8 2,971,969 - CCNA_02815 0.20 +0.0 2,971,969 - CCNA_02815 0.20 +1.3 2,971,969 - CCNA_02815 0.20 -0.0 2,971,969 - CCNA_02815 0.20 -0.5 2,971,969 - CCNA_02815 0.20 -1.6 2,972,010 + CCNA_02815 0.23 +0.5 2,972,010 + CCNA_02815 0.23 +0.3 2,972,018 - CCNA_02815 0.23 +0.3 2,972,033 + CCNA_02815 0.24 -1.8 2,972,033 + CCNA_02815 0.24 -2.1 2,972,033 + CCNA_02815 0.24 +0.7 2,972,033 + CCNA_02815 0.24 +1.8 2,972,033 + CCNA_02815 0.24 +0.2 2,972,033 + CCNA_02815 0.24 -0.2 2,972,041 - CCNA_02815 0.24 -0.1 2,972,041 - CCNA_02815 0.24 -1.8 2,972,041 - CCNA_02815 0.24 -0.0 2,972,041 - CCNA_02815 0.24 -0.5 2,972,041 - CCNA_02815 0.24 +0.7 2,972,051 - CCNA_02815 0.25 +1.2 2,972,107 + CCNA_02815 0.27 -1.6 2,972,115 - CCNA_02815 0.28 +1.1 2,972,124 - CCNA_02815 0.28 +0.2 2,972,137 - CCNA_02815 0.29 +1.5 2,972,170 - CCNA_02815 0.31 +0.2 2,972,196 - CCNA_02815 0.32 -0.7 2,972,245 + CCNA_02815 0.35 +1.0 2,972,245 + CCNA_02815 0.35 +1.2 2,972,252 + CCNA_02815 0.35 -0.2 2,972,276 + CCNA_02815 0.36 +0.3 2,972,284 - CCNA_02815 0.36 -2.1 2,972,284 - CCNA_02815 0.36 -0.7 2,972,342 - CCNA_02815 0.39 -0.2 2,972,356 - CCNA_02815 0.40 -0.8 2,972,363 + CCNA_02815 0.41 +0.0 2,972,388 - CCNA_02815 0.42 +0.3 2,972,435 - CCNA_02815 0.44 +1.3 2,972,437 + CCNA_02815 0.44 -1.1 2,972,444 + CCNA_02815 0.45 -2.4 2,972,445 - CCNA_02815 0.45 +0.5 2,972,452 - CCNA_02815 0.45 -1.5 2,972,459 + CCNA_02815 0.45 -1.2 2,972,459 + CCNA_02815 0.45 -1.3 2,972,459 + CCNA_02815 0.45 +0.7 2,972,467 - CCNA_02815 0.46 +1.7 2,972,491 - CCNA_02815 0.47 -0.0 2,972,507 + CCNA_02815 0.48 -0.6 2,972,507 + CCNA_02815 0.48 +0.9 2,972,507 + CCNA_02815 0.48 +0.9 2,972,510 - CCNA_02815 0.48 -0.5
Or see this region's nucleotide sequence