Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02772

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02770 and CCNA_02771 are separated by 17 nucleotidesCCNA_02771 and CCNA_02772 overlap by 7 nucleotidesCCNA_02772 and CCNA_02773 are separated by 18 nucleotidesCCNA_02773 and CCNA_02774 are separated by 134 nucleotides CCNA_02770: CCNA_02770 - conjugal transfer protein TrbL, at 2,930,177 to 2,931,532 _02770 CCNA_02771: CCNA_02771 - transposase, at 2,931,550 to 2,931,816 _02771 CCNA_02772: CCNA_02772 - transposase, at 2,931,810 to 2,932,736 _02772 CCNA_02773: CCNA_02773 - methyl-accepting chemotaxis protein, at 2,932,755 to 2,933,504 _02773 CCNA_02774: CCNA_02774 - hypothetical protein, at 2,933,639 to 2,934,097 _02774 Position (kb) 2931 2932 2933Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2930.843 kb on + strand, within CCNA_02770at 2930.852 kb on + strand, within CCNA_02770at 2930.861 kb on + strand, within CCNA_02770at 2930.862 kb on - strand, within CCNA_02770at 2930.872 kb on + strand, within CCNA_02770at 2930.873 kb on - strand, within CCNA_02770at 2930.912 kb on - strand, within CCNA_02770at 2930.913 kb on - strand, within CCNA_02770at 2930.919 kb on - strand, within CCNA_02770at 2930.919 kb on - strand, within CCNA_02770at 2931.010 kb on - strand, within CCNA_02770at 2931.010 kb on - strand, within CCNA_02770at 2931.011 kb on + strand, within CCNA_02770at 2931.015 kb on + strand, within CCNA_02770at 2931.023 kb on + strand, within CCNA_02770at 2931.023 kb on + strand, within CCNA_02770at 2931.023 kb on + strand, within CCNA_02770at 2931.031 kb on - strand, within CCNA_02770at 2931.089 kb on - strand, within CCNA_02770at 2931.107 kb on + strand, within CCNA_02770at 2931.115 kb on - strand, within CCNA_02770at 2931.128 kb on - strand, within CCNA_02770at 2931.134 kb on - strand, within CCNA_02770at 2931.140 kb on + strand, within CCNA_02770at 2931.191 kb on + strand, within CCNA_02770at 2931.248 kb on + strand, within CCNA_02770at 2931.256 kb on - strand, within CCNA_02770at 2931.286 kb on + strand, within CCNA_02770at 2931.310 kb on + strand, within CCNA_02770at 2931.310 kb on + strand, within CCNA_02770at 2931.318 kb on - strand, within CCNA_02770at 2931.325 kb on - strand, within CCNA_02770at 2931.330 kb on + strand, within CCNA_02770at 2931.356 kb on + strand, within CCNA_02770at 2931.356 kb on + strand, within CCNA_02770at 2931.364 kb on - strand, within CCNA_02770at 2931.364 kb on - strand, within CCNA_02770at 2931.407 kb on + strandat 2931.427 kb on - strandat 2931.460 kb on + strandat 2931.484 kb on - strandat 2931.493 kb on - strandat 2931.493 kb on - strandat 2931.493 kb on - strandat 2931.498 kb on - strandat 2931.527 kb on - strandat 2931.527 kb on - strandat 2931.527 kb on - strandat 2931.527 kb on - strandat 2931.527 kb on - strandat 2931.535 kb on - strandat 2931.535 kb on - strandat 2932.716 kb on + strandat 2932.731 kb on + strandat 2932.739 kb on + strandat 2932.757 kb on + strandat 2932.758 kb on - strandat 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.882 kb on + strand, within CCNA_02773at 2932.887 kb on + strand, within CCNA_02773at 2932.890 kb on - strand, within CCNA_02773at 2932.890 kb on - strand, within CCNA_02773at 2932.911 kb on - strand, within CCNA_02773at 2932.934 kb on + strand, within CCNA_02773at 2932.948 kb on + strand, within CCNA_02773at 2932.956 kb on - strand, within CCNA_02773at 2932.980 kb on + strand, within CCNA_02773at 2932.988 kb on - strand, within CCNA_02773at 2932.996 kb on + strand, within CCNA_02773at 2933.039 kb on - strand, within CCNA_02773at 2933.060 kb on + strand, within CCNA_02773at 2933.067 kb on + strand, within CCNA_02773at 2933.067 kb on + strand, within CCNA_02773at 2933.067 kb on + strand, within CCNA_02773at 2933.075 kb on - strand, within CCNA_02773at 2933.075 kb on - strand, within CCNA_02773at 2933.075 kb on - strand, within CCNA_02773at 2933.104 kb on + strand, within CCNA_02773at 2933.112 kb on - strand, within CCNA_02773at 2933.138 kb on + strand, within CCNA_02773at 2933.138 kb on + strand, within CCNA_02773at 2933.158 kb on - strand, within CCNA_02773at 2933.204 kb on + strand, within CCNA_02773at 2933.207 kb on - strand, within CCNA_02773at 2933.207 kb on - strand, within CCNA_02773at 2933.207 kb on - strand, within CCNA_02773at 2933.207 kb on - strand, within CCNA_02773at 2933.226 kb on - strand, within CCNA_02773at 2933.226 kb on - strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.228 kb on + strand, within CCNA_02773at 2933.236 kb on - strand, within CCNA_02773at 2933.236 kb on - strandat 2933.238 kb on + strand, within CCNA_02773at 2933.238 kb on + strand, within CCNA_02773at 2933.270 kb on - strand, within CCNA_02773at 2933.292 kb on - strand, within CCNA_02773at 2933.309 kb on + strand, within CCNA_02773at 2933.318 kb on - strand, within CCNA_02773at 2933.397 kb on + strand, within CCNA_02773at 2933.397 kb on + strand, within CCNA_02773at 2933.397 kb on + strand, within CCNA_02773at 2933.397 kb on + strand, within CCNA_02773at 2933.402 kb on + strand, within CCNA_02773at 2933.405 kb on - strand, within CCNA_02773at 2933.405 kb on - strand, within CCNA_02773at 2933.449 kb on + strandat 2933.456 kb on - strandat 2933.497 kb on + strandat 2933.506 kb on - strandat 2933.507 kb on - strandat 2933.507 kb on - strandat 2933.538 kb on - strandat 2933.538 kb on - strandat 2933.565 kb on - strandat 2933.588 kb on + strandat 2933.588 kb on + strandat 2933.596 kb on - strandat 2933.596 kb on - strandat 2933.605 kb on - strandat 2933.623 kb on + strandat 2933.632 kb on - strandat 2933.643 kb on - strandat 2933.671 kb on + strandat 2933.696 kb on - strand, within CCNA_02774at 2933.703 kb on + strand, within CCNA_02774at 2933.717 kb on - strand, within CCNA_02774

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,930,843 + CCNA_02770 0.49 -1.4
2,930,852 + CCNA_02770 0.50 -1.4
2,930,861 + CCNA_02770 0.50 -0.6
2,930,862 - CCNA_02770 0.51 -0.2
2,930,872 + CCNA_02770 0.51 -0.8
2,930,873 - CCNA_02770 0.51 -0.4
2,930,912 - CCNA_02770 0.54 +0.1
2,930,913 - CCNA_02770 0.54 -0.0
2,930,919 - CCNA_02770 0.55 -0.7
2,930,919 - CCNA_02770 0.55 -1.4
2,931,010 - CCNA_02770 0.61 +0.4
2,931,010 - CCNA_02770 0.61 +1.2
2,931,011 + CCNA_02770 0.62 -2.0
2,931,015 + CCNA_02770 0.62 -1.9
2,931,023 + CCNA_02770 0.62 -2.0
2,931,023 + CCNA_02770 0.62 -0.0
2,931,023 + CCNA_02770 0.62 -0.7
2,931,031 - CCNA_02770 0.63 -1.2
2,931,089 - CCNA_02770 0.67 +0.5
2,931,107 + CCNA_02770 0.69 +0.9
2,931,115 - CCNA_02770 0.69 -1.7
2,931,128 - CCNA_02770 0.70 -1.7
2,931,134 - CCNA_02770 0.71 -0.9
2,931,140 + CCNA_02770 0.71 +2.8
2,931,191 + CCNA_02770 0.75 -1.4
2,931,248 + CCNA_02770 0.79 +0.3
2,931,256 - CCNA_02770 0.80 +0.7
2,931,286 + CCNA_02770 0.82 +0.4
2,931,310 + CCNA_02770 0.84 +1.7
2,931,310 + CCNA_02770 0.84 +1.2
2,931,318 - CCNA_02770 0.84 -0.9
2,931,325 - CCNA_02770 0.85 -0.4
2,931,330 + CCNA_02770 0.85 -0.7
2,931,356 + CCNA_02770 0.87 -1.1
2,931,356 + CCNA_02770 0.87 +0.3
2,931,364 - CCNA_02770 0.88 -1.3
2,931,364 - CCNA_02770 0.88 -0.2
2,931,407 + -1.5
2,931,427 - +1.5
2,931,460 + -1.4
2,931,484 - -1.4
2,931,493 - -0.4
2,931,493 - -0.1
2,931,493 - -0.3
2,931,498 - +0.1
2,931,527 - +1.9
2,931,527 - +3.5
2,931,527 - +0.6
2,931,527 - +2.1
2,931,527 - +1.3
2,931,535 - -0.9
2,931,535 - -2.7
2,932,716 + -0.3
2,932,731 + -0.4
2,932,739 + -1.0
2,932,757 + -1.2
2,932,758 - +1.9
2,932,882 + CCNA_02773 0.17 +1.8
2,932,882 + CCNA_02773 0.17 -0.3
2,932,882 + CCNA_02773 0.17 -1.0
2,932,882 + CCNA_02773 0.17 -0.6
2,932,882 + CCNA_02773 0.17 +2.4
2,932,882 + CCNA_02773 0.17 -3.1
2,932,882 + CCNA_02773 0.17 -1.8
2,932,882 + CCNA_02773 0.17 +0.2
2,932,887 + CCNA_02773 0.18 -0.9
2,932,890 - CCNA_02773 0.18 -1.2
2,932,890 - CCNA_02773 0.18 +0.3
2,932,911 - CCNA_02773 0.21 -2.3
2,932,934 + CCNA_02773 0.24 -0.3
2,932,948 + CCNA_02773 0.26 -1.4
2,932,956 - CCNA_02773 0.27 -0.2
2,932,980 + CCNA_02773 0.30 -2.3
2,932,988 - CCNA_02773 0.31 -3.1
2,932,996 + CCNA_02773 0.32 -2.7
2,933,039 - CCNA_02773 0.38 +0.2
2,933,060 + CCNA_02773 0.41 -1.5
2,933,067 + CCNA_02773 0.42 -2.1
2,933,067 + CCNA_02773 0.42 -1.4
2,933,067 + CCNA_02773 0.42 +0.8
2,933,075 - CCNA_02773 0.43 -0.2
2,933,075 - CCNA_02773 0.43 +0.1
2,933,075 - CCNA_02773 0.43 -0.3
2,933,104 + CCNA_02773 0.47 -1.1
2,933,112 - CCNA_02773 0.48 -0.0
2,933,138 + CCNA_02773 0.51 -1.9
2,933,138 + CCNA_02773 0.51 -0.1
2,933,158 - CCNA_02773 0.54 +0.8
2,933,204 + CCNA_02773 0.60 -1.2
2,933,207 - CCNA_02773 0.60 -3.0
2,933,207 - CCNA_02773 0.60 -1.2
2,933,207 - CCNA_02773 0.60 +0.1
2,933,207 - CCNA_02773 0.60 -1.1
2,933,226 - CCNA_02773 0.63 +1.7
2,933,226 - CCNA_02773 0.63 +0.8
2,933,228 + CCNA_02773 0.63 -3.7
2,933,228 + CCNA_02773 0.63 +0.4
2,933,228 + CCNA_02773 0.63 -1.2
2,933,228 + CCNA_02773 0.63 -0.0
2,933,228 + CCNA_02773 0.63 -0.8
2,933,228 + CCNA_02773 0.63 -1.7
2,933,228 + CCNA_02773 0.63 -1.7
2,933,236 - CCNA_02773 0.64 -1.4
2,933,236 - +4.6
2,933,238 + CCNA_02773 0.64 +0.8
2,933,238 + CCNA_02773 0.64 +2.8
2,933,270 - CCNA_02773 0.69 -1.8
2,933,292 - CCNA_02773 0.72 -2.4
2,933,309 + CCNA_02773 0.74 -1.6
2,933,318 - CCNA_02773 0.75 -0.2
2,933,397 + CCNA_02773 0.86 -1.4
2,933,397 + CCNA_02773 0.86 +0.3
2,933,397 + CCNA_02773 0.86 -2.0
2,933,397 + CCNA_02773 0.86 -0.5
2,933,402 + CCNA_02773 0.86 -1.2
2,933,405 - CCNA_02773 0.87 -1.4
2,933,405 - CCNA_02773 0.87 -1.4
2,933,449 + +0.7
2,933,456 - -1.4
2,933,497 + +0.2
2,933,506 - -0.2
2,933,507 - -0.0
2,933,507 - -1.7
2,933,538 - -1.0
2,933,538 - -1.6
2,933,565 - -1.7
2,933,588 + -1.5
2,933,588 + +0.2
2,933,596 - +2.0
2,933,596 - -0.2
2,933,605 - -0.3
2,933,623 + +0.2
2,933,632 - -1.4
2,933,643 - -0.5
2,933,671 + -0.8
2,933,696 - CCNA_02774 0.12 +2.1
2,933,703 + CCNA_02774 0.14 +0.1
2,933,717 - CCNA_02774 0.17 -0.2

Or see this region's nucleotide sequence