Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02770 and CCNA_02771 are separated by 17 nucleotides CCNA_02771 and CCNA_02772 overlap by 7 nucleotides CCNA_02772 and CCNA_02773 are separated by 18 nucleotides CCNA_02773 and CCNA_02774 are separated by 134 nucleotides
CCNA_02770: CCNA_02770 - conjugal transfer protein TrbL, at 2,930,177 to 2,931,532
_02770
CCNA_02771: CCNA_02771 - transposase, at 2,931,550 to 2,931,816
_02771
CCNA_02772: CCNA_02772 - transposase, at 2,931,810 to 2,932,736
_02772
CCNA_02773: CCNA_02773 - methyl-accepting chemotaxis protein, at 2,932,755 to 2,933,504
_02773
CCNA_02774: CCNA_02774 - hypothetical protein, at 2,933,639 to 2,934,097
_02774
Position (kb)
2931
2932
2933 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2930.843 kb on + strand, within CCNA_02770 at 2930.852 kb on + strand, within CCNA_02770 at 2930.861 kb on + strand, within CCNA_02770 at 2930.862 kb on - strand, within CCNA_02770 at 2930.872 kb on + strand, within CCNA_02770 at 2930.873 kb on - strand, within CCNA_02770 at 2930.912 kb on - strand, within CCNA_02770 at 2930.913 kb on - strand, within CCNA_02770 at 2930.919 kb on - strand, within CCNA_02770 at 2930.919 kb on - strand, within CCNA_02770 at 2931.010 kb on - strand, within CCNA_02770 at 2931.010 kb on - strand, within CCNA_02770 at 2931.011 kb on + strand, within CCNA_02770 at 2931.015 kb on + strand, within CCNA_02770 at 2931.023 kb on + strand, within CCNA_02770 at 2931.023 kb on + strand, within CCNA_02770 at 2931.023 kb on + strand, within CCNA_02770 at 2931.031 kb on - strand, within CCNA_02770 at 2931.089 kb on - strand, within CCNA_02770 at 2931.107 kb on + strand, within CCNA_02770 at 2931.115 kb on - strand, within CCNA_02770 at 2931.128 kb on - strand, within CCNA_02770 at 2931.134 kb on - strand, within CCNA_02770 at 2931.140 kb on + strand, within CCNA_02770 at 2931.191 kb on + strand, within CCNA_02770 at 2931.248 kb on + strand, within CCNA_02770 at 2931.256 kb on - strand, within CCNA_02770 at 2931.286 kb on + strand, within CCNA_02770 at 2931.310 kb on + strand, within CCNA_02770 at 2931.310 kb on + strand, within CCNA_02770 at 2931.318 kb on - strand, within CCNA_02770 at 2931.325 kb on - strand, within CCNA_02770 at 2931.330 kb on + strand, within CCNA_02770 at 2931.356 kb on + strand, within CCNA_02770 at 2931.356 kb on + strand, within CCNA_02770 at 2931.364 kb on - strand, within CCNA_02770 at 2931.364 kb on - strand, within CCNA_02770 at 2931.407 kb on + strand at 2931.427 kb on - strand at 2931.460 kb on + strand at 2931.484 kb on - strand at 2931.493 kb on - strand at 2931.493 kb on - strand at 2931.493 kb on - strand at 2931.498 kb on - strand at 2931.527 kb on - strand at 2931.527 kb on - strand at 2931.527 kb on - strand at 2931.527 kb on - strand at 2931.527 kb on - strand at 2931.535 kb on - strand at 2931.535 kb on - strand at 2932.716 kb on + strand at 2932.731 kb on + strand at 2932.739 kb on + strand at 2932.757 kb on + strand at 2932.758 kb on - strand at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.882 kb on + strand, within CCNA_02773 at 2932.887 kb on + strand, within CCNA_02773 at 2932.890 kb on - strand, within CCNA_02773 at 2932.890 kb on - strand, within CCNA_02773 at 2932.911 kb on - strand, within CCNA_02773 at 2932.934 kb on + strand, within CCNA_02773 at 2932.948 kb on + strand, within CCNA_02773 at 2932.956 kb on - strand, within CCNA_02773 at 2932.980 kb on + strand, within CCNA_02773 at 2932.988 kb on - strand, within CCNA_02773 at 2932.996 kb on + strand, within CCNA_02773 at 2933.039 kb on - strand, within CCNA_02773 at 2933.060 kb on + strand, within CCNA_02773 at 2933.067 kb on + strand, within CCNA_02773 at 2933.067 kb on + strand, within CCNA_02773 at 2933.067 kb on + strand, within CCNA_02773 at 2933.075 kb on - strand, within CCNA_02773 at 2933.075 kb on - strand, within CCNA_02773 at 2933.075 kb on - strand, within CCNA_02773 at 2933.104 kb on + strand, within CCNA_02773 at 2933.112 kb on - strand, within CCNA_02773 at 2933.138 kb on + strand, within CCNA_02773 at 2933.138 kb on + strand, within CCNA_02773 at 2933.158 kb on - strand, within CCNA_02773 at 2933.204 kb on + strand, within CCNA_02773 at 2933.207 kb on - strand, within CCNA_02773 at 2933.207 kb on - strand, within CCNA_02773 at 2933.207 kb on - strand, within CCNA_02773 at 2933.207 kb on - strand, within CCNA_02773 at 2933.226 kb on - strand, within CCNA_02773 at 2933.226 kb on - strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.228 kb on + strand, within CCNA_02773 at 2933.236 kb on - strand, within CCNA_02773 at 2933.236 kb on - strand at 2933.238 kb on + strand, within CCNA_02773 at 2933.238 kb on + strand, within CCNA_02773 at 2933.270 kb on - strand, within CCNA_02773 at 2933.292 kb on - strand, within CCNA_02773 at 2933.309 kb on + strand, within CCNA_02773 at 2933.318 kb on - strand, within CCNA_02773 at 2933.397 kb on + strand, within CCNA_02773 at 2933.397 kb on + strand, within CCNA_02773 at 2933.397 kb on + strand, within CCNA_02773 at 2933.397 kb on + strand, within CCNA_02773 at 2933.402 kb on + strand, within CCNA_02773 at 2933.405 kb on - strand, within CCNA_02773 at 2933.405 kb on - strand, within CCNA_02773 at 2933.449 kb on + strand at 2933.456 kb on - strand at 2933.497 kb on + strand at 2933.506 kb on - strand at 2933.507 kb on - strand at 2933.507 kb on - strand at 2933.538 kb on - strand at 2933.538 kb on - strand at 2933.565 kb on - strand at 2933.588 kb on + strand at 2933.588 kb on + strand at 2933.596 kb on - strand at 2933.596 kb on - strand at 2933.605 kb on - strand at 2933.623 kb on + strand at 2933.632 kb on - strand at 2933.643 kb on - strand at 2933.671 kb on + strand at 2933.696 kb on - strand, within CCNA_02774 at 2933.703 kb on + strand, within CCNA_02774 at 2933.717 kb on - strand, within CCNA_02774
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,930,843 + CCNA_02770 0.49 -1.4 2,930,852 + CCNA_02770 0.50 -1.4 2,930,861 + CCNA_02770 0.50 -0.6 2,930,862 - CCNA_02770 0.51 -0.2 2,930,872 + CCNA_02770 0.51 -0.8 2,930,873 - CCNA_02770 0.51 -0.4 2,930,912 - CCNA_02770 0.54 +0.1 2,930,913 - CCNA_02770 0.54 -0.0 2,930,919 - CCNA_02770 0.55 -0.7 2,930,919 - CCNA_02770 0.55 -1.4 2,931,010 - CCNA_02770 0.61 +0.4 2,931,010 - CCNA_02770 0.61 +1.2 2,931,011 + CCNA_02770 0.62 -2.0 2,931,015 + CCNA_02770 0.62 -1.9 2,931,023 + CCNA_02770 0.62 -2.0 2,931,023 + CCNA_02770 0.62 -0.0 2,931,023 + CCNA_02770 0.62 -0.7 2,931,031 - CCNA_02770 0.63 -1.2 2,931,089 - CCNA_02770 0.67 +0.5 2,931,107 + CCNA_02770 0.69 +0.9 2,931,115 - CCNA_02770 0.69 -1.7 2,931,128 - CCNA_02770 0.70 -1.7 2,931,134 - CCNA_02770 0.71 -0.9 2,931,140 + CCNA_02770 0.71 +2.8 2,931,191 + CCNA_02770 0.75 -1.4 2,931,248 + CCNA_02770 0.79 +0.3 2,931,256 - CCNA_02770 0.80 +0.7 2,931,286 + CCNA_02770 0.82 +0.4 2,931,310 + CCNA_02770 0.84 +1.7 2,931,310 + CCNA_02770 0.84 +1.2 2,931,318 - CCNA_02770 0.84 -0.9 2,931,325 - CCNA_02770 0.85 -0.4 2,931,330 + CCNA_02770 0.85 -0.7 2,931,356 + CCNA_02770 0.87 -1.1 2,931,356 + CCNA_02770 0.87 +0.3 2,931,364 - CCNA_02770 0.88 -1.3 2,931,364 - CCNA_02770 0.88 -0.2 2,931,407 + -1.5 2,931,427 - +1.5 2,931,460 + -1.4 2,931,484 - -1.4 2,931,493 - -0.4 2,931,493 - -0.1 2,931,493 - -0.3 2,931,498 - +0.1 2,931,527 - +1.9 2,931,527 - +3.5 2,931,527 - +0.6 2,931,527 - +2.1 2,931,527 - +1.3 2,931,535 - -0.9 2,931,535 - -2.7 2,932,716 + -0.3 2,932,731 + -0.4 2,932,739 + -1.0 2,932,757 + -1.2 2,932,758 - +1.9 2,932,882 + CCNA_02773 0.17 +1.8 2,932,882 + CCNA_02773 0.17 -0.3 2,932,882 + CCNA_02773 0.17 -1.0 2,932,882 + CCNA_02773 0.17 -0.6 2,932,882 + CCNA_02773 0.17 +2.4 2,932,882 + CCNA_02773 0.17 -3.1 2,932,882 + CCNA_02773 0.17 -1.8 2,932,882 + CCNA_02773 0.17 +0.2 2,932,887 + CCNA_02773 0.18 -0.9 2,932,890 - CCNA_02773 0.18 -1.2 2,932,890 - CCNA_02773 0.18 +0.3 2,932,911 - CCNA_02773 0.21 -2.3 2,932,934 + CCNA_02773 0.24 -0.3 2,932,948 + CCNA_02773 0.26 -1.4 2,932,956 - CCNA_02773 0.27 -0.2 2,932,980 + CCNA_02773 0.30 -2.3 2,932,988 - CCNA_02773 0.31 -3.1 2,932,996 + CCNA_02773 0.32 -2.7 2,933,039 - CCNA_02773 0.38 +0.2 2,933,060 + CCNA_02773 0.41 -1.5 2,933,067 + CCNA_02773 0.42 -2.1 2,933,067 + CCNA_02773 0.42 -1.4 2,933,067 + CCNA_02773 0.42 +0.8 2,933,075 - CCNA_02773 0.43 -0.2 2,933,075 - CCNA_02773 0.43 +0.1 2,933,075 - CCNA_02773 0.43 -0.3 2,933,104 + CCNA_02773 0.47 -1.1 2,933,112 - CCNA_02773 0.48 -0.0 2,933,138 + CCNA_02773 0.51 -1.9 2,933,138 + CCNA_02773 0.51 -0.1 2,933,158 - CCNA_02773 0.54 +0.8 2,933,204 + CCNA_02773 0.60 -1.2 2,933,207 - CCNA_02773 0.60 -3.0 2,933,207 - CCNA_02773 0.60 -1.2 2,933,207 - CCNA_02773 0.60 +0.1 2,933,207 - CCNA_02773 0.60 -1.1 2,933,226 - CCNA_02773 0.63 +1.7 2,933,226 - CCNA_02773 0.63 +0.8 2,933,228 + CCNA_02773 0.63 -3.7 2,933,228 + CCNA_02773 0.63 +0.4 2,933,228 + CCNA_02773 0.63 -1.2 2,933,228 + CCNA_02773 0.63 -0.0 2,933,228 + CCNA_02773 0.63 -0.8 2,933,228 + CCNA_02773 0.63 -1.7 2,933,228 + CCNA_02773 0.63 -1.7 2,933,236 - CCNA_02773 0.64 -1.4 2,933,236 - +4.6 2,933,238 + CCNA_02773 0.64 +0.8 2,933,238 + CCNA_02773 0.64 +2.8 2,933,270 - CCNA_02773 0.69 -1.8 2,933,292 - CCNA_02773 0.72 -2.4 2,933,309 + CCNA_02773 0.74 -1.6 2,933,318 - CCNA_02773 0.75 -0.2 2,933,397 + CCNA_02773 0.86 -1.4 2,933,397 + CCNA_02773 0.86 +0.3 2,933,397 + CCNA_02773 0.86 -2.0 2,933,397 + CCNA_02773 0.86 -0.5 2,933,402 + CCNA_02773 0.86 -1.2 2,933,405 - CCNA_02773 0.87 -1.4 2,933,405 - CCNA_02773 0.87 -1.4 2,933,449 + +0.7 2,933,456 - -1.4 2,933,497 + +0.2 2,933,506 - -0.2 2,933,507 - -0.0 2,933,507 - -1.7 2,933,538 - -1.0 2,933,538 - -1.6 2,933,565 - -1.7 2,933,588 + -1.5 2,933,588 + +0.2 2,933,596 - +2.0 2,933,596 - -0.2 2,933,605 - -0.3 2,933,623 + +0.2 2,933,632 - -1.4 2,933,643 - -0.5 2,933,671 + -0.8 2,933,696 - CCNA_02774 0.12 +2.1 2,933,703 + CCNA_02774 0.14 +0.1 2,933,717 - CCNA_02774 0.17 -0.2
Or see this region's nucleotide sequence