Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02720 and CCNA_02721 are separated by 96 nucleotides CCNA_02721 and CCNA_02722 are separated by 61 nucleotides
CCNA_02720: CCNA_02720 - hypothetical protein, at 2,880,548 to 2,881,636
_02720
CCNA_02721: CCNA_02721 - peptidase, M16 family, at 2,881,733 to 2,884,663
_02721
CCNA_02722: CCNA_02722 - hypothetical protein, at 2,884,725 to 2,885,654
_02722
Position (kb)
2881
2882
2883
2884
2885 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2880.734 kb on + strand, within CCNA_02720 at 2880.737 kb on - strand, within CCNA_02720 at 2880.740 kb on + strand, within CCNA_02720 at 2880.742 kb on - strand, within CCNA_02720 at 2880.746 kb on + strand, within CCNA_02720 at 2880.765 kb on - strand, within CCNA_02720 at 2880.781 kb on + strand, within CCNA_02720 at 2880.781 kb on + strand, within CCNA_02720 at 2880.791 kb on + strand, within CCNA_02720 at 2880.823 kb on - strand, within CCNA_02720 at 2880.865 kb on + strand, within CCNA_02720 at 2880.883 kb on + strand, within CCNA_02720 at 2880.895 kb on + strand, within CCNA_02720 at 2880.920 kb on + strand, within CCNA_02720 at 2880.923 kb on + strand, within CCNA_02720 at 2880.965 kb on + strand, within CCNA_02720 at 2880.973 kb on - strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.004 kb on + strand, within CCNA_02720 at 2881.012 kb on - strand, within CCNA_02720 at 2881.039 kb on - strand, within CCNA_02720 at 2881.046 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.048 kb on + strand, within CCNA_02720 at 2881.056 kb on - strand, within CCNA_02720 at 2881.056 kb on - strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.063 kb on + strand, within CCNA_02720 at 2881.071 kb on - strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.083 kb on + strand, within CCNA_02720 at 2881.128 kb on - strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.169 kb on + strand, within CCNA_02720 at 2881.177 kb on - strand, within CCNA_02720 at 2881.187 kb on - strand, within CCNA_02720 at 2881.197 kb on - strand, within CCNA_02720 at 2881.226 kb on + strand, within CCNA_02720 at 2881.226 kb on + strand, within CCNA_02720 at 2881.231 kb on + strand, within CCNA_02720 at 2881.239 kb on - strand, within CCNA_02720 at 2881.243 kb on + strand, within CCNA_02720 at 2881.255 kb on + strand, within CCNA_02720 at 2881.374 kb on - strand, within CCNA_02720 at 2881.431 kb on + strand, within CCNA_02720 at 2881.459 kb on - strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.474 kb on + strand, within CCNA_02720 at 2881.483 kb on - strand, within CCNA_02720 at 2881.492 kb on + strand, within CCNA_02720 at 2881.492 kb on + strand, within CCNA_02720 at 2881.497 kb on + strand, within CCNA_02720 at 2881.497 kb on + strand, within CCNA_02720 at 2881.500 kb on - strand, within CCNA_02720 at 2881.505 kb on - strand, within CCNA_02720 at 2881.505 kb on - strand, within CCNA_02720 at 2881.507 kb on + strand, within CCNA_02720 at 2881.528 kb on + strand at 2881.547 kb on - strand at 2881.554 kb on - strand at 2881.569 kb on + strand at 2881.591 kb on + strand at 2881.591 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.631 kb on + strand at 2881.647 kb on + strand at 2881.690 kb on + strand at 2881.700 kb on - strand at 2881.719 kb on + strand at 2881.724 kb on + strand at 2881.735 kb on + strand at 2881.743 kb on - strand at 2884.636 kb on + strand at 2884.747 kb on + strand at 2884.757 kb on + strand at 2884.765 kb on - strand at 2884.765 kb on - strand at 2884.766 kb on - strand at 2884.793 kb on - strand at 2884.813 kb on + strand at 2884.836 kb on + strand, within CCNA_02722 at 2884.874 kb on - strand, within CCNA_02722 at 2884.880 kb on + strand, within CCNA_02722 at 2884.885 kb on + strand, within CCNA_02722 at 2884.954 kb on + strand, within CCNA_02722 at 2884.959 kb on - strand, within CCNA_02722 at 2884.962 kb on - strand, within CCNA_02722 at 2884.977 kb on - strand, within CCNA_02722 at 2884.979 kb on + strand, within CCNA_02722 at 2884.994 kb on - strand, within CCNA_02722 at 2885.052 kb on - strand, within CCNA_02722 at 2885.099 kb on - strand, within CCNA_02722 at 2885.158 kb on - strand, within CCNA_02722 at 2885.158 kb on - strand, within CCNA_02722 at 2885.158 kb on - strand, within CCNA_02722 at 2885.203 kb on + strand, within CCNA_02722 at 2885.216 kb on - strand, within CCNA_02722 at 2885.225 kb on + strand, within CCNA_02722 at 2885.225 kb on + strand, within CCNA_02722 at 2885.242 kb on - strand, within CCNA_02722 at 2885.260 kb on - strand, within CCNA_02722 at 2885.313 kb on - strand, within CCNA_02722 at 2885.336 kb on + strand, within CCNA_02722 at 2885.348 kb on + strand, within CCNA_02722 at 2885.372 kb on + strand, within CCNA_02722 at 2885.389 kb on + strand, within CCNA_02722 at 2885.454 kb on - strand, within CCNA_02722 at 2885.472 kb on - strand, within CCNA_02722 at 2885.524 kb on - strand, within CCNA_02722 at 2885.547 kb on + strand, within CCNA_02722 at 2885.578 kb on + strand at 2885.586 kb on - strand at 2885.586 kb on - strand at 2885.589 kb on - strand at 2885.595 kb on + strand at 2885.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,880,734 + CCNA_02720 0.17 +0.6 2,880,737 - CCNA_02720 0.17 -0.5 2,880,740 + CCNA_02720 0.18 +1.0 2,880,742 - CCNA_02720 0.18 -0.4 2,880,746 + CCNA_02720 0.18 +1.8 2,880,765 - CCNA_02720 0.20 -0.8 2,880,781 + CCNA_02720 0.21 +2.5 2,880,781 + CCNA_02720 0.21 +2.6 2,880,791 + CCNA_02720 0.22 +2.1 2,880,823 - CCNA_02720 0.25 -1.0 2,880,865 + CCNA_02720 0.29 +0.4 2,880,883 + CCNA_02720 0.31 +1.2 2,880,895 + CCNA_02720 0.32 +0.9 2,880,920 + CCNA_02720 0.34 +1.0 2,880,923 + CCNA_02720 0.34 +0.9 2,880,965 + CCNA_02720 0.38 +0.8 2,880,973 - CCNA_02720 0.39 -0.7 2,881,004 + CCNA_02720 0.42 +1.5 2,881,004 + CCNA_02720 0.42 +1.5 2,881,004 + CCNA_02720 0.42 +0.5 2,881,012 - CCNA_02720 0.43 -0.5 2,881,039 - CCNA_02720 0.45 -1.0 2,881,046 + CCNA_02720 0.46 +0.8 2,881,048 + CCNA_02720 0.46 +1.1 2,881,048 + CCNA_02720 0.46 +0.9 2,881,048 + CCNA_02720 0.46 +0.9 2,881,056 - CCNA_02720 0.47 +0.6 2,881,056 - CCNA_02720 0.47 +1.1 2,881,063 + CCNA_02720 0.47 +0.4 2,881,063 + CCNA_02720 0.47 +0.1 2,881,063 + CCNA_02720 0.47 +0.5 2,881,071 - CCNA_02720 0.48 -0.6 2,881,083 + CCNA_02720 0.49 +0.7 2,881,083 + CCNA_02720 0.49 +0.7 2,881,083 + CCNA_02720 0.49 -0.4 2,881,128 - CCNA_02720 0.53 -0.7 2,881,169 + CCNA_02720 0.57 +0.6 2,881,169 + CCNA_02720 0.57 +0.3 2,881,169 + CCNA_02720 0.57 -1.1 2,881,169 + CCNA_02720 0.57 +0.6 2,881,169 + CCNA_02720 0.57 -0.1 2,881,169 + CCNA_02720 0.57 +1.5 2,881,177 - CCNA_02720 0.58 -2.3 2,881,187 - CCNA_02720 0.59 +0.3 2,881,197 - CCNA_02720 0.60 +0.0 2,881,226 + CCNA_02720 0.62 +1.0 2,881,226 + CCNA_02720 0.62 +1.0 2,881,231 + CCNA_02720 0.63 +0.2 2,881,239 - CCNA_02720 0.63 -1.6 2,881,243 + CCNA_02720 0.64 -0.2 2,881,255 + CCNA_02720 0.65 -0.3 2,881,374 - CCNA_02720 0.76 -2.2 2,881,431 + CCNA_02720 0.81 +0.8 2,881,459 - CCNA_02720 0.84 -1.7 2,881,474 + CCNA_02720 0.85 +0.4 2,881,474 + CCNA_02720 0.85 +0.4 2,881,474 + CCNA_02720 0.85 -0.1 2,881,483 - CCNA_02720 0.86 -0.7 2,881,492 + CCNA_02720 0.87 +1.2 2,881,492 + CCNA_02720 0.87 +1.3 2,881,497 + CCNA_02720 0.87 +1.8 2,881,497 + CCNA_02720 0.87 +0.3 2,881,500 - CCNA_02720 0.87 -1.0 2,881,505 - CCNA_02720 0.88 -0.1 2,881,505 - CCNA_02720 0.88 -1.6 2,881,507 + CCNA_02720 0.88 +1.0 2,881,528 + +0.5 2,881,547 - -0.7 2,881,554 - -0.1 2,881,569 + -0.4 2,881,591 + +1.1 2,881,591 + +0.7 2,881,631 + +4.2 2,881,631 + +1.4 2,881,631 + +0.4 2,881,631 + -0.0 2,881,631 + +0.9 2,881,631 + +1.1 2,881,647 + +0.7 2,881,690 + +0.1 2,881,700 - -0.9 2,881,719 + +1.2 2,881,724 + -1.5 2,881,735 + +0.0 2,881,743 - -0.2 2,884,636 + +2.2 2,884,747 + +0.3 2,884,757 + -0.9 2,884,765 - +1.5 2,884,765 - +1.4 2,884,766 - +2.2 2,884,793 - +1.5 2,884,813 + +0.9 2,884,836 + CCNA_02722 0.12 +0.0 2,884,874 - CCNA_02722 0.16 +1.1 2,884,880 + CCNA_02722 0.17 -0.6 2,884,885 + CCNA_02722 0.17 -0.3 2,884,954 + CCNA_02722 0.25 +0.3 2,884,959 - CCNA_02722 0.25 +0.5 2,884,962 - CCNA_02722 0.25 +1.0 2,884,977 - CCNA_02722 0.27 +1.0 2,884,979 + CCNA_02722 0.27 +0.3 2,884,994 - CCNA_02722 0.29 +1.5 2,885,052 - CCNA_02722 0.35 +2.0 2,885,099 - CCNA_02722 0.40 +0.8 2,885,158 - CCNA_02722 0.47 +1.9 2,885,158 - CCNA_02722 0.47 +1.2 2,885,158 - CCNA_02722 0.47 +1.3 2,885,203 + CCNA_02722 0.51 -1.9 2,885,216 - CCNA_02722 0.53 +0.5 2,885,225 + CCNA_02722 0.54 +1.6 2,885,225 + CCNA_02722 0.54 -1.0 2,885,242 - CCNA_02722 0.56 +0.9 2,885,260 - CCNA_02722 0.58 +1.0 2,885,313 - CCNA_02722 0.63 +1.0 2,885,336 + CCNA_02722 0.66 +2.2 2,885,348 + CCNA_02722 0.67 +1.2 2,885,372 + CCNA_02722 0.70 -0.7 2,885,389 + CCNA_02722 0.71 -0.4 2,885,454 - CCNA_02722 0.78 +1.4 2,885,472 - CCNA_02722 0.80 +0.8 2,885,524 - CCNA_02722 0.86 +0.7 2,885,547 + CCNA_02722 0.88 -0.4 2,885,578 + -0.7 2,885,586 - +2.0 2,885,586 - +1.6 2,885,589 - +0.9 2,885,595 + -2.6 2,885,618 + +0.7
Or see this region's nucleotide sequence