Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02721

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02720 and CCNA_02721 are separated by 96 nucleotidesCCNA_02721 and CCNA_02722 are separated by 61 nucleotides CCNA_02720: CCNA_02720 - hypothetical protein, at 2,880,548 to 2,881,636 _02720 CCNA_02721: CCNA_02721 - peptidase, M16 family, at 2,881,733 to 2,884,663 _02721 CCNA_02722: CCNA_02722 - hypothetical protein, at 2,884,725 to 2,885,654 _02722 Position (kb) 2881 2882 2883 2884 2885Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2880.734 kb on + strand, within CCNA_02720at 2880.737 kb on - strand, within CCNA_02720at 2880.740 kb on + strand, within CCNA_02720at 2880.742 kb on - strand, within CCNA_02720at 2880.746 kb on + strand, within CCNA_02720at 2880.765 kb on - strand, within CCNA_02720at 2880.781 kb on + strand, within CCNA_02720at 2880.781 kb on + strand, within CCNA_02720at 2880.791 kb on + strand, within CCNA_02720at 2880.823 kb on - strand, within CCNA_02720at 2880.865 kb on + strand, within CCNA_02720at 2880.883 kb on + strand, within CCNA_02720at 2880.895 kb on + strand, within CCNA_02720at 2880.920 kb on + strand, within CCNA_02720at 2880.923 kb on + strand, within CCNA_02720at 2880.965 kb on + strand, within CCNA_02720at 2880.973 kb on - strand, within CCNA_02720at 2881.004 kb on + strand, within CCNA_02720at 2881.004 kb on + strand, within CCNA_02720at 2881.004 kb on + strand, within CCNA_02720at 2881.012 kb on - strand, within CCNA_02720at 2881.039 kb on - strand, within CCNA_02720at 2881.046 kb on + strand, within CCNA_02720at 2881.048 kb on + strand, within CCNA_02720at 2881.048 kb on + strand, within CCNA_02720at 2881.048 kb on + strand, within CCNA_02720at 2881.056 kb on - strand, within CCNA_02720at 2881.056 kb on - strand, within CCNA_02720at 2881.063 kb on + strand, within CCNA_02720at 2881.063 kb on + strand, within CCNA_02720at 2881.063 kb on + strand, within CCNA_02720at 2881.071 kb on - strand, within CCNA_02720at 2881.083 kb on + strand, within CCNA_02720at 2881.083 kb on + strand, within CCNA_02720at 2881.083 kb on + strand, within CCNA_02720at 2881.128 kb on - strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.169 kb on + strand, within CCNA_02720at 2881.177 kb on - strand, within CCNA_02720at 2881.187 kb on - strand, within CCNA_02720at 2881.197 kb on - strand, within CCNA_02720at 2881.226 kb on + strand, within CCNA_02720at 2881.226 kb on + strand, within CCNA_02720at 2881.231 kb on + strand, within CCNA_02720at 2881.239 kb on - strand, within CCNA_02720at 2881.243 kb on + strand, within CCNA_02720at 2881.255 kb on + strand, within CCNA_02720at 2881.374 kb on - strand, within CCNA_02720at 2881.431 kb on + strand, within CCNA_02720at 2881.459 kb on - strand, within CCNA_02720at 2881.474 kb on + strand, within CCNA_02720at 2881.474 kb on + strand, within CCNA_02720at 2881.474 kb on + strand, within CCNA_02720at 2881.483 kb on - strand, within CCNA_02720at 2881.492 kb on + strand, within CCNA_02720at 2881.492 kb on + strand, within CCNA_02720at 2881.497 kb on + strand, within CCNA_02720at 2881.497 kb on + strand, within CCNA_02720at 2881.500 kb on - strand, within CCNA_02720at 2881.505 kb on - strand, within CCNA_02720at 2881.505 kb on - strand, within CCNA_02720at 2881.507 kb on + strand, within CCNA_02720at 2881.528 kb on + strandat 2881.547 kb on - strandat 2881.554 kb on - strandat 2881.569 kb on + strandat 2881.591 kb on + strandat 2881.591 kb on + strandat 2881.631 kb on + strandat 2881.631 kb on + strandat 2881.631 kb on + strandat 2881.631 kb on + strandat 2881.631 kb on + strandat 2881.631 kb on + strandat 2881.647 kb on + strandat 2881.690 kb on + strandat 2881.700 kb on - strandat 2881.719 kb on + strandat 2881.724 kb on + strandat 2881.735 kb on + strandat 2881.743 kb on - strandat 2884.636 kb on + strandat 2884.747 kb on + strandat 2884.757 kb on + strandat 2884.765 kb on - strandat 2884.765 kb on - strandat 2884.766 kb on - strandat 2884.793 kb on - strandat 2884.813 kb on + strandat 2884.836 kb on + strand, within CCNA_02722at 2884.874 kb on - strand, within CCNA_02722at 2884.880 kb on + strand, within CCNA_02722at 2884.885 kb on + strand, within CCNA_02722at 2884.954 kb on + strand, within CCNA_02722at 2884.959 kb on - strand, within CCNA_02722at 2884.962 kb on - strand, within CCNA_02722at 2884.977 kb on - strand, within CCNA_02722at 2884.979 kb on + strand, within CCNA_02722at 2884.994 kb on - strand, within CCNA_02722at 2885.052 kb on - strand, within CCNA_02722at 2885.099 kb on - strand, within CCNA_02722at 2885.158 kb on - strand, within CCNA_02722at 2885.158 kb on - strand, within CCNA_02722at 2885.158 kb on - strand, within CCNA_02722at 2885.203 kb on + strand, within CCNA_02722at 2885.216 kb on - strand, within CCNA_02722at 2885.225 kb on + strand, within CCNA_02722at 2885.225 kb on + strand, within CCNA_02722at 2885.242 kb on - strand, within CCNA_02722at 2885.260 kb on - strand, within CCNA_02722at 2885.313 kb on - strand, within CCNA_02722at 2885.336 kb on + strand, within CCNA_02722at 2885.348 kb on + strand, within CCNA_02722at 2885.372 kb on + strand, within CCNA_02722at 2885.389 kb on + strand, within CCNA_02722at 2885.454 kb on - strand, within CCNA_02722at 2885.472 kb on - strand, within CCNA_02722at 2885.524 kb on - strand, within CCNA_02722at 2885.547 kb on + strand, within CCNA_02722at 2885.578 kb on + strandat 2885.586 kb on - strandat 2885.586 kb on - strandat 2885.589 kb on - strandat 2885.595 kb on + strandat 2885.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,880,734 + CCNA_02720 0.17 +0.6
2,880,737 - CCNA_02720 0.17 -0.5
2,880,740 + CCNA_02720 0.18 +1.0
2,880,742 - CCNA_02720 0.18 -0.4
2,880,746 + CCNA_02720 0.18 +1.8
2,880,765 - CCNA_02720 0.20 -0.8
2,880,781 + CCNA_02720 0.21 +2.5
2,880,781 + CCNA_02720 0.21 +2.6
2,880,791 + CCNA_02720 0.22 +2.1
2,880,823 - CCNA_02720 0.25 -1.0
2,880,865 + CCNA_02720 0.29 +0.4
2,880,883 + CCNA_02720 0.31 +1.2
2,880,895 + CCNA_02720 0.32 +0.9
2,880,920 + CCNA_02720 0.34 +1.0
2,880,923 + CCNA_02720 0.34 +0.9
2,880,965 + CCNA_02720 0.38 +0.8
2,880,973 - CCNA_02720 0.39 -0.7
2,881,004 + CCNA_02720 0.42 +1.5
2,881,004 + CCNA_02720 0.42 +1.5
2,881,004 + CCNA_02720 0.42 +0.5
2,881,012 - CCNA_02720 0.43 -0.5
2,881,039 - CCNA_02720 0.45 -1.0
2,881,046 + CCNA_02720 0.46 +0.8
2,881,048 + CCNA_02720 0.46 +1.1
2,881,048 + CCNA_02720 0.46 +0.9
2,881,048 + CCNA_02720 0.46 +0.9
2,881,056 - CCNA_02720 0.47 +0.6
2,881,056 - CCNA_02720 0.47 +1.1
2,881,063 + CCNA_02720 0.47 +0.4
2,881,063 + CCNA_02720 0.47 +0.1
2,881,063 + CCNA_02720 0.47 +0.5
2,881,071 - CCNA_02720 0.48 -0.6
2,881,083 + CCNA_02720 0.49 +0.7
2,881,083 + CCNA_02720 0.49 +0.7
2,881,083 + CCNA_02720 0.49 -0.4
2,881,128 - CCNA_02720 0.53 -0.7
2,881,169 + CCNA_02720 0.57 +0.6
2,881,169 + CCNA_02720 0.57 +0.3
2,881,169 + CCNA_02720 0.57 -1.1
2,881,169 + CCNA_02720 0.57 +0.6
2,881,169 + CCNA_02720 0.57 -0.1
2,881,169 + CCNA_02720 0.57 +1.5
2,881,177 - CCNA_02720 0.58 -2.3
2,881,187 - CCNA_02720 0.59 +0.3
2,881,197 - CCNA_02720 0.60 +0.0
2,881,226 + CCNA_02720 0.62 +1.0
2,881,226 + CCNA_02720 0.62 +1.0
2,881,231 + CCNA_02720 0.63 +0.2
2,881,239 - CCNA_02720 0.63 -1.6
2,881,243 + CCNA_02720 0.64 -0.2
2,881,255 + CCNA_02720 0.65 -0.3
2,881,374 - CCNA_02720 0.76 -2.2
2,881,431 + CCNA_02720 0.81 +0.8
2,881,459 - CCNA_02720 0.84 -1.7
2,881,474 + CCNA_02720 0.85 +0.4
2,881,474 + CCNA_02720 0.85 +0.4
2,881,474 + CCNA_02720 0.85 -0.1
2,881,483 - CCNA_02720 0.86 -0.7
2,881,492 + CCNA_02720 0.87 +1.2
2,881,492 + CCNA_02720 0.87 +1.3
2,881,497 + CCNA_02720 0.87 +1.8
2,881,497 + CCNA_02720 0.87 +0.3
2,881,500 - CCNA_02720 0.87 -1.0
2,881,505 - CCNA_02720 0.88 -0.1
2,881,505 - CCNA_02720 0.88 -1.6
2,881,507 + CCNA_02720 0.88 +1.0
2,881,528 + +0.5
2,881,547 - -0.7
2,881,554 - -0.1
2,881,569 + -0.4
2,881,591 + +1.1
2,881,591 + +0.7
2,881,631 + +4.2
2,881,631 + +1.4
2,881,631 + +0.4
2,881,631 + -0.0
2,881,631 + +0.9
2,881,631 + +1.1
2,881,647 + +0.7
2,881,690 + +0.1
2,881,700 - -0.9
2,881,719 + +1.2
2,881,724 + -1.5
2,881,735 + +0.0
2,881,743 - -0.2
2,884,636 + +2.2
2,884,747 + +0.3
2,884,757 + -0.9
2,884,765 - +1.5
2,884,765 - +1.4
2,884,766 - +2.2
2,884,793 - +1.5
2,884,813 + +0.9
2,884,836 + CCNA_02722 0.12 +0.0
2,884,874 - CCNA_02722 0.16 +1.1
2,884,880 + CCNA_02722 0.17 -0.6
2,884,885 + CCNA_02722 0.17 -0.3
2,884,954 + CCNA_02722 0.25 +0.3
2,884,959 - CCNA_02722 0.25 +0.5
2,884,962 - CCNA_02722 0.25 +1.0
2,884,977 - CCNA_02722 0.27 +1.0
2,884,979 + CCNA_02722 0.27 +0.3
2,884,994 - CCNA_02722 0.29 +1.5
2,885,052 - CCNA_02722 0.35 +2.0
2,885,099 - CCNA_02722 0.40 +0.8
2,885,158 - CCNA_02722 0.47 +1.9
2,885,158 - CCNA_02722 0.47 +1.2
2,885,158 - CCNA_02722 0.47 +1.3
2,885,203 + CCNA_02722 0.51 -1.9
2,885,216 - CCNA_02722 0.53 +0.5
2,885,225 + CCNA_02722 0.54 +1.6
2,885,225 + CCNA_02722 0.54 -1.0
2,885,242 - CCNA_02722 0.56 +0.9
2,885,260 - CCNA_02722 0.58 +1.0
2,885,313 - CCNA_02722 0.63 +1.0
2,885,336 + CCNA_02722 0.66 +2.2
2,885,348 + CCNA_02722 0.67 +1.2
2,885,372 + CCNA_02722 0.70 -0.7
2,885,389 + CCNA_02722 0.71 -0.4
2,885,454 - CCNA_02722 0.78 +1.4
2,885,472 - CCNA_02722 0.80 +0.8
2,885,524 - CCNA_02722 0.86 +0.7
2,885,547 + CCNA_02722 0.88 -0.4
2,885,578 + -0.7
2,885,586 - +2.0
2,885,586 - +1.6
2,885,589 - +0.9
2,885,595 + -2.6
2,885,618 + +0.7

Or see this region's nucleotide sequence