Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02321 and CCNA_02322 overlap by 20 nucleotides CCNA_02322 and CCNA_03966 are separated by 73 nucleotides CCNA_03966 and CCNA_02324 are separated by 150 nucleotides
CCNA_02321: CCNA_02321 - O-succinylhomoserine sulfhydrylase, at 2,463,535 to 2,464,719
_02321
CCNA_02322: CCNA_02322 - Co2+/Mg2+ efflux protein ApaG, at 2,464,700 to 2,465,164
_02322
CCNA_03966: CCNA_03966 - hypothetical protein, at 2,465,238 to 2,465,672
_03966
CCNA_02324: CCNA_02324 - heat shock protein 33 hsp33, at 2,465,823 to 2,466,731
_02324
Position (kb)
2464
2465
2466 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2463.759 kb on + strand, within CCNA_02321 at 2463.767 kb on - strand, within CCNA_02321 at 2463.817 kb on + strand, within CCNA_02321 at 2463.825 kb on - strand, within CCNA_02321 at 2463.825 kb on - strand, within CCNA_02321 at 2463.839 kb on - strand, within CCNA_02321 at 2463.847 kb on - strand, within CCNA_02321 at 2463.868 kb on - strand, within CCNA_02321 at 2463.882 kb on + strand, within CCNA_02321 at 2463.919 kb on + strand, within CCNA_02321 at 2463.932 kb on - strand, within CCNA_02321 at 2463.937 kb on - strand, within CCNA_02321 at 2463.956 kb on + strand, within CCNA_02321 at 2463.956 kb on - strand, within CCNA_02321 at 2463.962 kb on - strand, within CCNA_02321 at 2463.975 kb on + strand, within CCNA_02321 at 2463.975 kb on + strand, within CCNA_02321 at 2463.999 kb on - strand, within CCNA_02321 at 2464.006 kb on + strand, within CCNA_02321 at 2464.070 kb on + strand, within CCNA_02321 at 2464.070 kb on + strand, within CCNA_02321 at 2464.071 kb on + strand, within CCNA_02321 at 2464.085 kb on - strand, within CCNA_02321 at 2464.091 kb on + strand, within CCNA_02321 at 2464.182 kb on - strand, within CCNA_02321 at 2464.182 kb on - strand, within CCNA_02321 at 2464.182 kb on - strand, within CCNA_02321 at 2464.186 kb on + strand, within CCNA_02321 at 2464.191 kb on + strand, within CCNA_02321 at 2464.196 kb on + strand, within CCNA_02321 at 2464.209 kb on - strand, within CCNA_02321 at 2464.228 kb on + strand, within CCNA_02321 at 2464.244 kb on + strand, within CCNA_02321 at 2464.353 kb on - strand, within CCNA_02321 at 2464.356 kb on + strand, within CCNA_02321 at 2464.356 kb on + strand, within CCNA_02321 at 2464.362 kb on + strand, within CCNA_02321 at 2464.370 kb on - strand, within CCNA_02321 at 2464.374 kb on + strand, within CCNA_02321 at 2464.377 kb on - strand, within CCNA_02321 at 2464.383 kb on + strand, within CCNA_02321 at 2464.409 kb on + strand, within CCNA_02321 at 2464.431 kb on - strand, within CCNA_02321 at 2464.472 kb on + strand, within CCNA_02321 at 2464.490 kb on - strand, within CCNA_02321 at 2464.506 kb on - strand, within CCNA_02321 at 2464.568 kb on - strand, within CCNA_02321 at 2464.612 kb on + strand at 2464.660 kb on + strand at 2464.668 kb on - strand at 2464.668 kb on - strand at 2464.668 kb on - strand at 2464.698 kb on - strand at 2464.715 kb on + strand at 2464.723 kb on + strand at 2464.773 kb on + strand, within CCNA_02322 at 2464.792 kb on + strand, within CCNA_02322 at 2464.847 kb on - strand, within CCNA_02322 at 2464.851 kb on + strand, within CCNA_02322 at 2464.872 kb on - strand, within CCNA_02322 at 2464.882 kb on - strand, within CCNA_02322 at 2464.916 kb on - strand, within CCNA_02322 at 2464.921 kb on + strand, within CCNA_02322 at 2464.943 kb on - strand, within CCNA_02322 at 2464.948 kb on - strand, within CCNA_02322 at 2464.998 kb on - strand, within CCNA_02322 at 2465.003 kb on - strand, within CCNA_02322 at 2465.012 kb on + strand, within CCNA_02322 at 2465.024 kb on + strand, within CCNA_02322 at 2465.024 kb on + strand, within CCNA_02322 at 2465.032 kb on - strand, within CCNA_02322 at 2465.032 kb on - strand, within CCNA_02322 at 2465.032 kb on - strand, within CCNA_02322 at 2465.032 kb on - strand, within CCNA_02322 at 2465.101 kb on + strand, within CCNA_02322 at 2465.142 kb on - strand at 2465.173 kb on + strand at 2465.198 kb on + strand at 2465.219 kb on + strand at 2465.219 kb on + strand at 2465.222 kb on - strand at 2465.227 kb on - strand at 2465.227 kb on - strand at 2465.227 kb on - strand at 2465.244 kb on + strand at 2465.252 kb on - strand at 2465.275 kb on - strand at 2465.302 kb on - strand at 2465.302 kb on - strand, within CCNA_03966 at 2465.324 kb on + strand, within CCNA_03966 at 2465.332 kb on - strand, within CCNA_03966 at 2465.332 kb on - strand, within CCNA_03966 at 2465.340 kb on + strand, within CCNA_03966 at 2465.346 kb on + strand, within CCNA_03966 at 2465.354 kb on - strand, within CCNA_03966 at 2465.403 kb on + strand, within CCNA_03966 at 2465.403 kb on + strand, within CCNA_03966 at 2465.411 kb on - strand, within CCNA_03966 at 2465.430 kb on - strand, within CCNA_03966 at 2465.470 kb on - strand, within CCNA_03966 at 2465.483 kb on + strand, within CCNA_03966 at 2465.491 kb on - strand, within CCNA_03966 at 2465.491 kb on - strand, within CCNA_03966 at 2465.492 kb on + strand, within CCNA_03966 at 2465.492 kb on + strand, within CCNA_03966 at 2465.605 kb on + strand, within CCNA_03966 at 2465.613 kb on - strand, within CCNA_03966 at 2465.689 kb on - strand at 2465.714 kb on + strand at 2465.717 kb on - strand at 2465.769 kb on - strand at 2465.803 kb on - strand at 2465.803 kb on - strand at 2465.942 kb on + strand, within CCNA_02324 at 2465.954 kb on + strand, within CCNA_02324 at 2465.962 kb on - strand, within CCNA_02324 at 2465.962 kb on - strand, within CCNA_02324 at 2465.999 kb on + strand, within CCNA_02324 at 2465.999 kb on + strand, within CCNA_02324 at 2466.025 kb on + strand, within CCNA_02324 at 2466.025 kb on + strand, within CCNA_02324 at 2466.090 kb on - strand, within CCNA_02324
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,463,759 + CCNA_02321 0.19 -1.4 2,463,767 - CCNA_02321 0.20 -3.3 2,463,817 + CCNA_02321 0.24 -1.5 2,463,825 - CCNA_02321 0.24 -2.4 2,463,825 - CCNA_02321 0.24 -0.8 2,463,839 - CCNA_02321 0.26 -1.1 2,463,847 - CCNA_02321 0.26 -2.3 2,463,868 - CCNA_02321 0.28 -2.5 2,463,882 + CCNA_02321 0.29 -1.7 2,463,919 + CCNA_02321 0.32 +0.7 2,463,932 - CCNA_02321 0.34 -3.5 2,463,937 - CCNA_02321 0.34 -1.4 2,463,956 + CCNA_02321 0.36 -2.3 2,463,956 - CCNA_02321 0.36 -0.8 2,463,962 - CCNA_02321 0.36 -0.8 2,463,975 + CCNA_02321 0.37 -4.3 2,463,975 + CCNA_02321 0.37 -2.2 2,463,999 - CCNA_02321 0.39 +0.3 2,464,006 + CCNA_02321 0.40 -4.2 2,464,070 + CCNA_02321 0.45 -2.3 2,464,070 + CCNA_02321 0.45 -3.6 2,464,071 + CCNA_02321 0.45 -3.9 2,464,085 - CCNA_02321 0.46 -1.8 2,464,091 + CCNA_02321 0.47 -2.7 2,464,182 - CCNA_02321 0.55 -3.6 2,464,182 - CCNA_02321 0.55 -2.7 2,464,182 - CCNA_02321 0.55 -2.8 2,464,186 + CCNA_02321 0.55 -4.0 2,464,191 + CCNA_02321 0.55 -4.5 2,464,196 + CCNA_02321 0.56 -4.2 2,464,209 - CCNA_02321 0.57 -3.0 2,464,228 + CCNA_02321 0.58 -1.4 2,464,244 + CCNA_02321 0.60 -2.8 2,464,353 - CCNA_02321 0.69 +2.3 2,464,356 + CCNA_02321 0.69 -2.3 2,464,356 + CCNA_02321 0.69 -3.1 2,464,362 + CCNA_02321 0.70 -3.7 2,464,370 - CCNA_02321 0.70 -3.0 2,464,374 + CCNA_02321 0.71 -1.9 2,464,377 - CCNA_02321 0.71 -1.7 2,464,383 + CCNA_02321 0.72 -0.4 2,464,409 + CCNA_02321 0.74 -1.1 2,464,431 - CCNA_02321 0.76 -2.4 2,464,472 + CCNA_02321 0.79 -2.8 2,464,490 - CCNA_02321 0.81 -2.9 2,464,506 - CCNA_02321 0.82 -3.1 2,464,568 - CCNA_02321 0.87 -3.3 2,464,612 + -2.8 2,464,660 + -3.3 2,464,668 - -1.4 2,464,668 - -2.7 2,464,668 - -1.0 2,464,698 - -2.5 2,464,715 + +0.6 2,464,723 + -0.4 2,464,773 + CCNA_02322 0.16 +0.7 2,464,792 + CCNA_02322 0.20 +0.9 2,464,847 - CCNA_02322 0.32 +0.2 2,464,851 + CCNA_02322 0.32 -1.2 2,464,872 - CCNA_02322 0.37 -0.7 2,464,882 - CCNA_02322 0.39 +0.3 2,464,916 - CCNA_02322 0.46 -0.5 2,464,921 + CCNA_02322 0.48 +0.2 2,464,943 - CCNA_02322 0.52 +1.5 2,464,948 - CCNA_02322 0.53 +3.3 2,464,998 - CCNA_02322 0.64 -0.5 2,465,003 - CCNA_02322 0.65 -0.4 2,465,012 + CCNA_02322 0.67 +1.2 2,465,024 + CCNA_02322 0.70 +1.7 2,465,024 + CCNA_02322 0.70 +2.0 2,465,032 - CCNA_02322 0.71 -0.7 2,465,032 - CCNA_02322 0.71 +1.3 2,465,032 - CCNA_02322 0.71 -1.0 2,465,032 - CCNA_02322 0.71 -0.8 2,465,101 + CCNA_02322 0.86 +2.0 2,465,142 - +2.3 2,465,173 + +0.1 2,465,198 + +2.1 2,465,219 + +0.8 2,465,219 + +0.5 2,465,222 - -0.4 2,465,227 - +0.3 2,465,227 - -1.2 2,465,227 - -0.2 2,465,244 + +1.5 2,465,252 - -2.5 2,465,275 - +0.5 2,465,302 - +0.7 2,465,302 - CCNA_03966 0.15 -0.6 2,465,324 + CCNA_03966 0.20 +1.2 2,465,332 - CCNA_03966 0.22 -0.6 2,465,332 - CCNA_03966 0.22 -1.4 2,465,340 + CCNA_03966 0.23 +1.1 2,465,346 + CCNA_03966 0.25 +1.3 2,465,354 - CCNA_03966 0.27 -3.0 2,465,403 + CCNA_03966 0.38 +1.8 2,465,403 + CCNA_03966 0.38 +1.3 2,465,411 - CCNA_03966 0.40 -1.2 2,465,430 - CCNA_03966 0.44 +0.9 2,465,470 - CCNA_03966 0.53 -0.8 2,465,483 + CCNA_03966 0.56 +0.9 2,465,491 - CCNA_03966 0.58 -1.4 2,465,491 - CCNA_03966 0.58 -0.5 2,465,492 + CCNA_03966 0.58 +2.1 2,465,492 + CCNA_03966 0.58 +1.3 2,465,605 + CCNA_03966 0.84 +1.3 2,465,613 - CCNA_03966 0.86 -1.7 2,465,689 - +1.0 2,465,714 + +1.4 2,465,717 - +0.2 2,465,769 - +1.1 2,465,803 - +1.7 2,465,803 - +1.0 2,465,942 + CCNA_02324 0.13 +2.3 2,465,954 + CCNA_02324 0.14 +0.6 2,465,962 - CCNA_02324 0.15 +2.4 2,465,962 - CCNA_02324 0.15 +1.2 2,465,999 + CCNA_02324 0.19 +0.2 2,465,999 + CCNA_02324 0.19 -0.1 2,466,025 + CCNA_02324 0.22 -0.8 2,466,025 + CCNA_02324 0.22 +3.0 2,466,090 - CCNA_02324 0.29 +2.1
Or see this region's nucleotide sequence