Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02292 and CCNA_02293 overlap by 4 nucleotides CCNA_02293 and CCNA_02294 are separated by 0 nucleotides CCNA_02294 and CCNA_02295 overlap by 22 nucleotides CCNA_02295 and CCNA_02296 are separated by 9 nucleotides
CCNA_02292: CCNA_02292 - acetyltransferase, at 2,439,791 to 2,440,519
_02292
CCNA_02293: CCNA_02293 - thiol:disulfide interchange protein tlpA, at 2,440,516 to 2,441,148
_02293
CCNA_02294: CCNA_02294 - argininosuccinate lyase, at 2,441,149 to 2,442,567
_02294
CCNA_02295: CCNA_02295 - hypothetical protein, at 2,442,546 to 2,442,866
_02295
CCNA_02296: CCNA_02296 - diaminopimelate decarboxylase, at 2,442,876 to 2,444,141
_02296
Position (kb)
2441
2442
2443 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2440.218 kb on - strand, within CCNA_02292 at 2440.223 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.233 kb on - strand, within CCNA_02292 at 2440.240 kb on + strand, within CCNA_02292 at 2440.240 kb on + strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.248 kb on - strand, within CCNA_02292 at 2440.311 kb on - strand, within CCNA_02292 at 2440.330 kb on + strand, within CCNA_02292 at 2440.401 kb on + strand, within CCNA_02292 at 2440.448 kb on + strand at 2440.448 kb on + strand at 2440.453 kb on + strand at 2440.453 kb on + strand at 2440.456 kb on - strand at 2440.456 kb on - strand at 2440.461 kb on - strand at 2440.473 kb on + strand at 2440.473 kb on + strand at 2440.473 kb on + strand at 2440.481 kb on - strand at 2440.481 kb on - strand at 2440.481 kb on - strand at 2440.519 kb on + strand at 2440.578 kb on + strand at 2440.639 kb on - strand, within CCNA_02293 at 2440.639 kb on - strand, within CCNA_02293 at 2440.656 kb on + strand, within CCNA_02293 at 2440.658 kb on + strand, within CCNA_02293 at 2440.664 kb on - strand, within CCNA_02293 at 2440.668 kb on + strand, within CCNA_02293 at 2440.669 kb on - strand, within CCNA_02293 at 2440.676 kb on - strand, within CCNA_02293 at 2440.740 kb on - strand, within CCNA_02293 at 2440.796 kb on + strand, within CCNA_02293 at 2440.796 kb on + strand, within CCNA_02293 at 2440.804 kb on - strand, within CCNA_02293 at 2440.820 kb on - strand, within CCNA_02293 at 2440.826 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.836 kb on + strand, within CCNA_02293 at 2440.858 kb on - strand, within CCNA_02293 at 2440.878 kb on + strand, within CCNA_02293 at 2440.895 kb on + strand, within CCNA_02293 at 2440.943 kb on - strand, within CCNA_02293 at 2440.948 kb on - strand, within CCNA_02293 at 2441.008 kb on + strand, within CCNA_02293 at 2441.041 kb on + strand, within CCNA_02293 at 2441.041 kb on + strand, within CCNA_02293 at 2441.104 kb on - strand at 2442.561 kb on + strand at 2442.574 kb on - strand at 2442.674 kb on - strand, within CCNA_02295 at 2442.698 kb on - strand, within CCNA_02295 at 2442.705 kb on + strand, within CCNA_02295 at 2442.711 kb on + strand, within CCNA_02295 at 2442.715 kb on + strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.719 kb on - strand, within CCNA_02295 at 2442.795 kb on + strand, within CCNA_02295 at 2442.800 kb on + strand, within CCNA_02295
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,440,218 - CCNA_02292 0.59 +1.0 2,440,223 - CCNA_02292 0.59 +0.7 2,440,233 - CCNA_02292 0.61 -0.3 2,440,233 - CCNA_02292 0.61 +0.4 2,440,233 - CCNA_02292 0.61 +0.7 2,440,240 + CCNA_02292 0.62 +0.0 2,440,240 + CCNA_02292 0.62 -0.2 2,440,248 - CCNA_02292 0.63 +0.7 2,440,248 - CCNA_02292 0.63 -0.0 2,440,248 - CCNA_02292 0.63 +0.7 2,440,248 - CCNA_02292 0.63 -0.2 2,440,311 - CCNA_02292 0.71 +3.7 2,440,330 + CCNA_02292 0.74 -1.6 2,440,401 + CCNA_02292 0.84 -0.7 2,440,448 + -0.6 2,440,448 + +0.3 2,440,453 + -1.0 2,440,453 + -1.6 2,440,456 - +1.0 2,440,456 - +1.0 2,440,461 - +0.3 2,440,473 + -1.8 2,440,473 + +1.0 2,440,473 + -2.7 2,440,481 - +0.6 2,440,481 - +1.0 2,440,481 - +0.5 2,440,519 + -2.6 2,440,578 + -2.2 2,440,639 - CCNA_02293 0.19 +1.2 2,440,639 - CCNA_02293 0.19 -1.3 2,440,656 + CCNA_02293 0.22 -1.2 2,440,658 + CCNA_02293 0.22 -1.9 2,440,664 - CCNA_02293 0.23 -0.0 2,440,668 + CCNA_02293 0.24 -1.8 2,440,669 - CCNA_02293 0.24 +0.4 2,440,676 - CCNA_02293 0.25 -1.1 2,440,740 - CCNA_02293 0.35 +0.8 2,440,796 + CCNA_02293 0.44 -1.0 2,440,796 + CCNA_02293 0.44 +0.7 2,440,804 - CCNA_02293 0.45 -0.3 2,440,820 - CCNA_02293 0.48 -1.3 2,440,826 + CCNA_02293 0.49 +0.3 2,440,836 + CCNA_02293 0.51 +0.8 2,440,836 + CCNA_02293 0.51 +0.3 2,440,836 + CCNA_02293 0.51 -1.0 2,440,858 - CCNA_02293 0.54 +1.3 2,440,878 + CCNA_02293 0.57 -2.4 2,440,895 + CCNA_02293 0.60 -0.7 2,440,943 - CCNA_02293 0.67 +1.3 2,440,948 - CCNA_02293 0.68 -1.7 2,441,008 + CCNA_02293 0.78 -1.8 2,441,041 + CCNA_02293 0.83 -2.0 2,441,041 + CCNA_02293 0.83 -1.1 2,441,104 - -0.4 2,442,561 + -2.0 2,442,574 - -0.0 2,442,674 - CCNA_02295 0.40 -0.2 2,442,698 - CCNA_02295 0.47 -1.5 2,442,705 + CCNA_02295 0.50 -0.7 2,442,711 + CCNA_02295 0.51 +1.1 2,442,715 + CCNA_02295 0.53 -3.5 2,442,719 - CCNA_02295 0.54 -1.5 2,442,719 - CCNA_02295 0.54 -1.2 2,442,795 + CCNA_02295 0.78 -0.0 2,442,800 + CCNA_02295 0.79 -0.7
Or see this region's nucleotide sequence