Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02255 and CCNA_02256 are separated by 105 nucleotides CCNA_02256 and CCNA_R0052 are separated by 148 nucleotides CCNA_R0052 and CCNA_02257 are separated by 85 nucleotides CCNA_02257 and CCNA_02258 are separated by 12 nucleotides
CCNA_02255: CCNA_02255 - lysozyme-family localization factor spmX, at 2,405,880 to 2,407,175
_02255
CCNA_02256: CCNA_02256 - Mg2+ transporter mgtE, at 2,407,281 to 2,408,750
_02256
CCNA_R0052: CCNA_R0052 - tRNA-Leu, at 2,408,899 to 2,408,983
_R0052
CCNA_02257: CCNA_02257 - fliN family protein, at 2,409,069 to 2,409,380
_02257
CCNA_02258: CCNA_02258 - lipoate-protein ligase B, at 2,409,393 to 2,410,118
_02258
Position (kb)
2407
2408
2409 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2406.292 kb on + strand, within CCNA_02255 at 2406.310 kb on - strand, within CCNA_02255 at 2406.358 kb on + strand, within CCNA_02255 at 2406.358 kb on + strand, within CCNA_02255 at 2406.358 kb on + strand, within CCNA_02255 at 2406.358 kb on + strand, within CCNA_02255 at 2406.366 kb on - strand, within CCNA_02255 at 2406.398 kb on + strand, within CCNA_02255 at 2406.422 kb on + strand, within CCNA_02255 at 2406.422 kb on + strand, within CCNA_02255 at 2406.422 kb on + strand, within CCNA_02255 at 2406.430 kb on - strand at 2406.430 kb on - strand, within CCNA_02255 at 2406.430 kb on - strand, within CCNA_02255 at 2406.431 kb on - strand, within CCNA_02255 at 2406.501 kb on - strand, within CCNA_02255 at 2406.501 kb on - strand, within CCNA_02255 at 2406.562 kb on + strand, within CCNA_02255 at 2406.593 kb on + strand, within CCNA_02255 at 2406.602 kb on - strand, within CCNA_02255 at 2406.677 kb on + strand, within CCNA_02255 at 2406.697 kb on - strand, within CCNA_02255 at 2406.697 kb on - strand, within CCNA_02255 at 2406.697 kb on - strand, within CCNA_02255 at 2406.697 kb on - strand, within CCNA_02255 at 2406.702 kb on - strand, within CCNA_02255 at 2406.824 kb on - strand, within CCNA_02255 at 2406.852 kb on + strand, within CCNA_02255 at 2406.913 kb on + strand, within CCNA_02255 at 2406.926 kb on - strand, within CCNA_02255 at 2406.952 kb on + strand, within CCNA_02255 at 2406.952 kb on + strand, within CCNA_02255 at 2406.958 kb on - strand, within CCNA_02255 at 2406.960 kb on - strand, within CCNA_02255 at 2406.960 kb on - strand, within CCNA_02255 at 2406.960 kb on - strand, within CCNA_02255 at 2406.960 kb on - strand, within CCNA_02255 at 2407.055 kb on + strand at 2407.055 kb on + strand at 2407.055 kb on + strand at 2407.057 kb on - strand at 2407.075 kb on + strand at 2407.126 kb on + strand at 2407.190 kb on - strand at 2407.192 kb on + strand at 2407.224 kb on - strand at 2407.259 kb on + strand at 2407.259 kb on + strand at 2407.279 kb on + strand at 2407.279 kb on + strand at 2407.287 kb on - strand at 2407.287 kb on - strand at 2408.655 kb on - strand at 2408.737 kb on - strand at 2408.737 kb on - strand at 2408.745 kb on + strand at 2408.746 kb on + strand at 2408.756 kb on - strand at 2408.765 kb on - strand at 2408.765 kb on - strand at 2408.765 kb on - strand at 2408.798 kb on + strand at 2408.810 kb on - strand at 2408.843 kb on - strand at 2409.099 kb on - strand at 2409.116 kb on + strand, within CCNA_02257 at 2409.119 kb on - strand, within CCNA_02257 at 2409.124 kb on + strand, within CCNA_02257 at 2409.141 kb on + strand, within CCNA_02257 at 2409.141 kb on + strand, within CCNA_02257 at 2409.141 kb on + strand, within CCNA_02257 at 2409.149 kb on - strand, within CCNA_02257 at 2409.175 kb on - strand, within CCNA_02257 at 2409.192 kb on - strand, within CCNA_02257 at 2409.196 kb on + strand, within CCNA_02257 at 2409.202 kb on - strand, within CCNA_02257 at 2409.210 kb on - strand, within CCNA_02257 at 2409.273 kb on + strand, within CCNA_02257 at 2409.273 kb on + strand, within CCNA_02257 at 2409.281 kb on - strand, within CCNA_02257 at 2409.281 kb on - strand, within CCNA_02257 at 2409.288 kb on + strand, within CCNA_02257 at 2409.291 kb on - strand, within CCNA_02257 at 2409.304 kb on + strand, within CCNA_02257 at 2409.304 kb on + strand, within CCNA_02257 at 2409.309 kb on + strand, within CCNA_02257 at 2409.312 kb on - strand, within CCNA_02257 at 2409.322 kb on + strand, within CCNA_02257 at 2409.330 kb on + strand, within CCNA_02257 at 2409.338 kb on - strand, within CCNA_02257 at 2409.338 kb on - strand, within CCNA_02257 at 2409.348 kb on + strand, within CCNA_02257 at 2409.367 kb on + strand at 2409.367 kb on + strand at 2409.367 kb on - strand at 2409.381 kb on + strand at 2409.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,406,292 + CCNA_02255 0.32 -3.0 2,406,310 - CCNA_02255 0.33 +0.8 2,406,358 + CCNA_02255 0.37 -1.3 2,406,358 + CCNA_02255 0.37 -0.3 2,406,358 + CCNA_02255 0.37 -1.4 2,406,358 + CCNA_02255 0.37 -0.9 2,406,366 - CCNA_02255 0.38 +0.0 2,406,398 + CCNA_02255 0.40 -0.5 2,406,422 + CCNA_02255 0.42 +0.2 2,406,422 + CCNA_02255 0.42 -1.3 2,406,422 + CCNA_02255 0.42 -1.8 2,406,430 - +1.3 2,406,430 - CCNA_02255 0.42 +0.3 2,406,430 - CCNA_02255 0.42 +0.1 2,406,431 - CCNA_02255 0.43 +0.6 2,406,501 - CCNA_02255 0.48 +0.4 2,406,501 - CCNA_02255 0.48 +0.1 2,406,562 + CCNA_02255 0.53 -1.6 2,406,593 + CCNA_02255 0.55 -1.9 2,406,602 - CCNA_02255 0.56 +0.2 2,406,677 + CCNA_02255 0.61 -1.4 2,406,697 - CCNA_02255 0.63 +0.6 2,406,697 - CCNA_02255 0.63 -2.1 2,406,697 - CCNA_02255 0.63 -0.8 2,406,697 - CCNA_02255 0.63 -0.4 2,406,702 - CCNA_02255 0.63 -0.4 2,406,824 - CCNA_02255 0.73 +1.1 2,406,852 + CCNA_02255 0.75 -0.1 2,406,913 + CCNA_02255 0.80 -0.1 2,406,926 - CCNA_02255 0.81 -1.4 2,406,952 + CCNA_02255 0.83 -1.0 2,406,952 + CCNA_02255 0.83 -0.1 2,406,958 - CCNA_02255 0.83 -0.3 2,406,960 - CCNA_02255 0.83 +0.1 2,406,960 - CCNA_02255 0.83 +0.2 2,406,960 - CCNA_02255 0.83 -0.2 2,406,960 - CCNA_02255 0.83 -1.9 2,407,055 + -0.9 2,407,055 + +1.0 2,407,055 + -1.3 2,407,057 - -1.7 2,407,075 + -0.7 2,407,126 + -2.7 2,407,190 - +0.1 2,407,192 + +0.5 2,407,224 - -0.6 2,407,259 + -0.1 2,407,259 + +2.3 2,407,279 + +0.8 2,407,279 + -2.1 2,407,287 - -0.5 2,407,287 - -1.7 2,408,655 - +0.4 2,408,737 - -0.7 2,408,737 - +0.7 2,408,745 + -0.5 2,408,746 + -1.3 2,408,756 - +0.5 2,408,765 - +1.0 2,408,765 - +1.0 2,408,765 - +0.9 2,408,798 + -1.2 2,408,810 - +1.1 2,408,843 - +1.8 2,409,099 - +0.6 2,409,116 + CCNA_02257 0.15 -0.6 2,409,119 - CCNA_02257 0.16 +1.7 2,409,124 + CCNA_02257 0.18 -4.1 2,409,141 + CCNA_02257 0.23 -1.3 2,409,141 + CCNA_02257 0.23 -0.8 2,409,141 + CCNA_02257 0.23 -2.4 2,409,149 - CCNA_02257 0.26 +1.3 2,409,175 - CCNA_02257 0.34 +1.2 2,409,192 - CCNA_02257 0.39 +0.9 2,409,196 + CCNA_02257 0.41 +1.1 2,409,202 - CCNA_02257 0.43 +0.7 2,409,210 - CCNA_02257 0.45 +1.8 2,409,273 + CCNA_02257 0.65 -1.4 2,409,273 + CCNA_02257 0.65 +0.0 2,409,281 - CCNA_02257 0.68 +0.0 2,409,281 - CCNA_02257 0.68 +0.5 2,409,288 + CCNA_02257 0.70 -2.6 2,409,291 - CCNA_02257 0.71 -0.2 2,409,304 + CCNA_02257 0.75 +1.6 2,409,304 + CCNA_02257 0.75 +1.8 2,409,309 + CCNA_02257 0.77 +0.0 2,409,312 - CCNA_02257 0.78 +0.9 2,409,322 + CCNA_02257 0.81 -0.1 2,409,330 + CCNA_02257 0.84 -3.2 2,409,338 - CCNA_02257 0.86 +0.0 2,409,338 - CCNA_02257 0.86 -0.1 2,409,348 + CCNA_02257 0.89 -0.4 2,409,367 + +0.2 2,409,367 + -1.7 2,409,367 - +0.3 2,409,381 + +0.4 2,409,389 - +0.3
Or see this region's nucleotide sequence