Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02256

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02255 and CCNA_02256 are separated by 105 nucleotidesCCNA_02256 and CCNA_R0052 are separated by 148 nucleotidesCCNA_R0052 and CCNA_02257 are separated by 85 nucleotidesCCNA_02257 and CCNA_02258 are separated by 12 nucleotides CCNA_02255: CCNA_02255 - lysozyme-family localization factor spmX, at 2,405,880 to 2,407,175 _02255 CCNA_02256: CCNA_02256 - Mg2+ transporter mgtE, at 2,407,281 to 2,408,750 _02256 CCNA_R0052: CCNA_R0052 - tRNA-Leu, at 2,408,899 to 2,408,983 _R0052 CCNA_02257: CCNA_02257 - fliN family protein, at 2,409,069 to 2,409,380 _02257 CCNA_02258: CCNA_02258 - lipoate-protein ligase B, at 2,409,393 to 2,410,118 _02258 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2406.292 kb on + strand, within CCNA_02255at 2406.310 kb on - strand, within CCNA_02255at 2406.358 kb on + strand, within CCNA_02255at 2406.358 kb on + strand, within CCNA_02255at 2406.358 kb on + strand, within CCNA_02255at 2406.358 kb on + strand, within CCNA_02255at 2406.366 kb on - strand, within CCNA_02255at 2406.398 kb on + strand, within CCNA_02255at 2406.422 kb on + strand, within CCNA_02255at 2406.422 kb on + strand, within CCNA_02255at 2406.422 kb on + strand, within CCNA_02255at 2406.430 kb on - strandat 2406.430 kb on - strand, within CCNA_02255at 2406.430 kb on - strand, within CCNA_02255at 2406.431 kb on - strand, within CCNA_02255at 2406.501 kb on - strand, within CCNA_02255at 2406.501 kb on - strand, within CCNA_02255at 2406.562 kb on + strand, within CCNA_02255at 2406.593 kb on + strand, within CCNA_02255at 2406.602 kb on - strand, within CCNA_02255at 2406.677 kb on + strand, within CCNA_02255at 2406.697 kb on - strand, within CCNA_02255at 2406.697 kb on - strand, within CCNA_02255at 2406.697 kb on - strand, within CCNA_02255at 2406.697 kb on - strand, within CCNA_02255at 2406.702 kb on - strand, within CCNA_02255at 2406.824 kb on - strand, within CCNA_02255at 2406.852 kb on + strand, within CCNA_02255at 2406.913 kb on + strand, within CCNA_02255at 2406.926 kb on - strand, within CCNA_02255at 2406.952 kb on + strand, within CCNA_02255at 2406.952 kb on + strand, within CCNA_02255at 2406.958 kb on - strand, within CCNA_02255at 2406.960 kb on - strand, within CCNA_02255at 2406.960 kb on - strand, within CCNA_02255at 2406.960 kb on - strand, within CCNA_02255at 2406.960 kb on - strand, within CCNA_02255at 2407.055 kb on + strandat 2407.055 kb on + strandat 2407.055 kb on + strandat 2407.057 kb on - strandat 2407.075 kb on + strandat 2407.126 kb on + strandat 2407.190 kb on - strandat 2407.192 kb on + strandat 2407.224 kb on - strandat 2407.259 kb on + strandat 2407.259 kb on + strandat 2407.279 kb on + strandat 2407.279 kb on + strandat 2407.287 kb on - strandat 2407.287 kb on - strandat 2408.655 kb on - strandat 2408.737 kb on - strandat 2408.737 kb on - strandat 2408.745 kb on + strandat 2408.746 kb on + strandat 2408.756 kb on - strandat 2408.765 kb on - strandat 2408.765 kb on - strandat 2408.765 kb on - strandat 2408.798 kb on + strandat 2408.810 kb on - strandat 2408.843 kb on - strandat 2409.099 kb on - strandat 2409.116 kb on + strand, within CCNA_02257at 2409.119 kb on - strand, within CCNA_02257at 2409.124 kb on + strand, within CCNA_02257at 2409.141 kb on + strand, within CCNA_02257at 2409.141 kb on + strand, within CCNA_02257at 2409.141 kb on + strand, within CCNA_02257at 2409.149 kb on - strand, within CCNA_02257at 2409.175 kb on - strand, within CCNA_02257at 2409.192 kb on - strand, within CCNA_02257at 2409.196 kb on + strand, within CCNA_02257at 2409.202 kb on - strand, within CCNA_02257at 2409.210 kb on - strand, within CCNA_02257at 2409.273 kb on + strand, within CCNA_02257at 2409.273 kb on + strand, within CCNA_02257at 2409.281 kb on - strand, within CCNA_02257at 2409.281 kb on - strand, within CCNA_02257at 2409.288 kb on + strand, within CCNA_02257at 2409.291 kb on - strand, within CCNA_02257at 2409.304 kb on + strand, within CCNA_02257at 2409.304 kb on + strand, within CCNA_02257at 2409.309 kb on + strand, within CCNA_02257at 2409.312 kb on - strand, within CCNA_02257at 2409.322 kb on + strand, within CCNA_02257at 2409.330 kb on + strand, within CCNA_02257at 2409.338 kb on - strand, within CCNA_02257at 2409.338 kb on - strand, within CCNA_02257at 2409.348 kb on + strand, within CCNA_02257at 2409.367 kb on + strandat 2409.367 kb on + strandat 2409.367 kb on - strandat 2409.381 kb on + strandat 2409.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,406,292 + CCNA_02255 0.32 -3.0
2,406,310 - CCNA_02255 0.33 +0.8
2,406,358 + CCNA_02255 0.37 -1.3
2,406,358 + CCNA_02255 0.37 -0.3
2,406,358 + CCNA_02255 0.37 -1.4
2,406,358 + CCNA_02255 0.37 -0.9
2,406,366 - CCNA_02255 0.38 +0.0
2,406,398 + CCNA_02255 0.40 -0.5
2,406,422 + CCNA_02255 0.42 +0.2
2,406,422 + CCNA_02255 0.42 -1.3
2,406,422 + CCNA_02255 0.42 -1.8
2,406,430 - +1.3
2,406,430 - CCNA_02255 0.42 +0.3
2,406,430 - CCNA_02255 0.42 +0.1
2,406,431 - CCNA_02255 0.43 +0.6
2,406,501 - CCNA_02255 0.48 +0.4
2,406,501 - CCNA_02255 0.48 +0.1
2,406,562 + CCNA_02255 0.53 -1.6
2,406,593 + CCNA_02255 0.55 -1.9
2,406,602 - CCNA_02255 0.56 +0.2
2,406,677 + CCNA_02255 0.61 -1.4
2,406,697 - CCNA_02255 0.63 +0.6
2,406,697 - CCNA_02255 0.63 -2.1
2,406,697 - CCNA_02255 0.63 -0.8
2,406,697 - CCNA_02255 0.63 -0.4
2,406,702 - CCNA_02255 0.63 -0.4
2,406,824 - CCNA_02255 0.73 +1.1
2,406,852 + CCNA_02255 0.75 -0.1
2,406,913 + CCNA_02255 0.80 -0.1
2,406,926 - CCNA_02255 0.81 -1.4
2,406,952 + CCNA_02255 0.83 -1.0
2,406,952 + CCNA_02255 0.83 -0.1
2,406,958 - CCNA_02255 0.83 -0.3
2,406,960 - CCNA_02255 0.83 +0.1
2,406,960 - CCNA_02255 0.83 +0.2
2,406,960 - CCNA_02255 0.83 -0.2
2,406,960 - CCNA_02255 0.83 -1.9
2,407,055 + -0.9
2,407,055 + +1.0
2,407,055 + -1.3
2,407,057 - -1.7
2,407,075 + -0.7
2,407,126 + -2.7
2,407,190 - +0.1
2,407,192 + +0.5
2,407,224 - -0.6
2,407,259 + -0.1
2,407,259 + +2.3
2,407,279 + +0.8
2,407,279 + -2.1
2,407,287 - -0.5
2,407,287 - -1.7
2,408,655 - +0.4
2,408,737 - -0.7
2,408,737 - +0.7
2,408,745 + -0.5
2,408,746 + -1.3
2,408,756 - +0.5
2,408,765 - +1.0
2,408,765 - +1.0
2,408,765 - +0.9
2,408,798 + -1.2
2,408,810 - +1.1
2,408,843 - +1.8
2,409,099 - +0.6
2,409,116 + CCNA_02257 0.15 -0.6
2,409,119 - CCNA_02257 0.16 +1.7
2,409,124 + CCNA_02257 0.18 -4.1
2,409,141 + CCNA_02257 0.23 -1.3
2,409,141 + CCNA_02257 0.23 -0.8
2,409,141 + CCNA_02257 0.23 -2.4
2,409,149 - CCNA_02257 0.26 +1.3
2,409,175 - CCNA_02257 0.34 +1.2
2,409,192 - CCNA_02257 0.39 +0.9
2,409,196 + CCNA_02257 0.41 +1.1
2,409,202 - CCNA_02257 0.43 +0.7
2,409,210 - CCNA_02257 0.45 +1.8
2,409,273 + CCNA_02257 0.65 -1.4
2,409,273 + CCNA_02257 0.65 +0.0
2,409,281 - CCNA_02257 0.68 +0.0
2,409,281 - CCNA_02257 0.68 +0.5
2,409,288 + CCNA_02257 0.70 -2.6
2,409,291 - CCNA_02257 0.71 -0.2
2,409,304 + CCNA_02257 0.75 +1.6
2,409,304 + CCNA_02257 0.75 +1.8
2,409,309 + CCNA_02257 0.77 +0.0
2,409,312 - CCNA_02257 0.78 +0.9
2,409,322 + CCNA_02257 0.81 -0.1
2,409,330 + CCNA_02257 0.84 -3.2
2,409,338 - CCNA_02257 0.86 +0.0
2,409,338 - CCNA_02257 0.86 -0.1
2,409,348 + CCNA_02257 0.89 -0.4
2,409,367 + +0.2
2,409,367 + -1.7
2,409,367 - +0.3
2,409,381 + +0.4
2,409,389 - +0.3

Or see this region's nucleotide sequence