Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02122 and CCNA_02123 are separated by 335 nucleotides CCNA_02123 and CCNA_02124 are separated by 144 nucleotides CCNA_02124 and CCNA_02125 are separated by 243 nucleotides
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422
_02123
CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028
_02124
CCNA_02125: CCNA_02125 - polar development protein podJ, at 2,276,272 to 2,279,196
_02125
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand at 2275.412 kb on + strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.684 kb on - strand, within CCNA_02124 at 2275.728 kb on - strand, within CCNA_02124 at 2275.756 kb on - strand, within CCNA_02124 at 2275.780 kb on - strand, within CCNA_02124 at 2275.792 kb on + strand, within CCNA_02124 at 2275.800 kb on - strand, within CCNA_02124 at 2275.828 kb on + strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.928 kb on - strand, within CCNA_02124 at 2276.220 kb on + strand at 2276.261 kb on - strand at 2276.277 kb on - strand at 2276.309 kb on + strand at 2276.357 kb on - strand at 2276.371 kb on - strand at 2276.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,273,974 + CCNA_02122 0.13 -1.7 2,273,974 + CCNA_02122 0.13 -0.1 2,273,995 + CCNA_02122 0.16 -0.4 2,274,061 - CCNA_02122 0.25 +1.6 2,274,089 - CCNA_02122 0.29 -0.7 2,274,183 + CCNA_02122 0.42 +0.5 2,274,207 + CCNA_02122 0.45 -0.7 2,274,219 + CCNA_02122 0.47 -0.2 2,274,229 + CCNA_02122 0.49 +0.0 2,274,237 - CCNA_02122 0.50 -3.1 2,274,237 - CCNA_02122 0.50 +0.1 2,274,269 - CCNA_02122 0.54 -3.3 2,274,270 - CCNA_02122 0.54 -1.4 2,274,280 - CCNA_02122 0.56 -2.2 2,274,367 + CCNA_02122 0.68 -1.0 2,274,367 + CCNA_02122 0.68 +0.2 2,274,375 - CCNA_02122 0.69 -0.6 2,274,380 + CCNA_02122 0.70 -0.2 2,274,453 - CCNA_02122 0.80 -0.8 2,274,532 - -0.7 2,274,556 - +1.4 2,274,576 - +0.4 2,275,412 + +0.6 2,275,463 - +0.6 2,275,463 - +0.4 2,275,463 - -1.0 2,275,463 - -0.6 2,275,463 - +0.4 2,275,463 - -1.5 2,275,463 - +0.0 2,275,684 - CCNA_02124 0.25 -0.1 2,275,728 - CCNA_02124 0.35 +0.2 2,275,756 - CCNA_02124 0.41 +0.8 2,275,780 - CCNA_02124 0.46 -1.2 2,275,792 + CCNA_02124 0.49 -1.1 2,275,800 - CCNA_02124 0.50 +0.8 2,275,828 + CCNA_02124 0.56 +0.2 2,275,836 - CCNA_02124 0.58 +1.0 2,275,836 - CCNA_02124 0.58 -0.2 2,275,846 - CCNA_02124 0.60 +2.2 2,275,846 - CCNA_02124 0.60 +0.4 2,275,928 - CCNA_02124 0.78 +1.3 2,276,220 + -0.9 2,276,261 - +1.7 2,276,277 - +1.1 2,276,309 + +1.1 2,276,357 - +1.3 2,276,371 - +2.9 2,276,406 + -1.3
Or see this region's nucleotide sequence