Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02123

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02122 and CCNA_02123 are separated by 335 nucleotidesCCNA_02123 and CCNA_02124 are separated by 144 nucleotidesCCNA_02124 and CCNA_02125 are separated by 243 nucleotides CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data), at 2,273,885 to 2,274,592 _02122 CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422 _02123 CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028 _02124 CCNA_02125: CCNA_02125 - polar development protein podJ, at 2,276,272 to 2,279,196 _02125 Position (kb) 2274 2275 2276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2273.974 kb on + strand, within CCNA_02122at 2273.974 kb on + strand, within CCNA_02122at 2273.995 kb on + strand, within CCNA_02122at 2274.061 kb on - strand, within CCNA_02122at 2274.089 kb on - strand, within CCNA_02122at 2274.183 kb on + strand, within CCNA_02122at 2274.207 kb on + strand, within CCNA_02122at 2274.219 kb on + strand, within CCNA_02122at 2274.229 kb on + strand, within CCNA_02122at 2274.237 kb on - strand, within CCNA_02122at 2274.237 kb on - strand, within CCNA_02122at 2274.269 kb on - strand, within CCNA_02122at 2274.270 kb on - strand, within CCNA_02122at 2274.280 kb on - strand, within CCNA_02122at 2274.367 kb on + strand, within CCNA_02122at 2274.367 kb on + strand, within CCNA_02122at 2274.375 kb on - strand, within CCNA_02122at 2274.380 kb on + strand, within CCNA_02122at 2274.453 kb on - strand, within CCNA_02122at 2274.532 kb on - strandat 2274.556 kb on - strandat 2274.576 kb on - strandat 2275.412 kb on + strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.463 kb on - strandat 2275.684 kb on - strand, within CCNA_02124at 2275.728 kb on - strand, within CCNA_02124at 2275.756 kb on - strand, within CCNA_02124at 2275.780 kb on - strand, within CCNA_02124at 2275.792 kb on + strand, within CCNA_02124at 2275.800 kb on - strand, within CCNA_02124at 2275.828 kb on + strand, within CCNA_02124at 2275.836 kb on - strand, within CCNA_02124at 2275.836 kb on - strand, within CCNA_02124at 2275.846 kb on - strand, within CCNA_02124at 2275.846 kb on - strand, within CCNA_02124at 2275.928 kb on - strand, within CCNA_02124at 2276.220 kb on + strandat 2276.261 kb on - strandat 2276.277 kb on - strandat 2276.309 kb on + strandat 2276.357 kb on - strandat 2276.371 kb on - strandat 2276.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,273,974 + CCNA_02122 0.13 -1.7
2,273,974 + CCNA_02122 0.13 -0.1
2,273,995 + CCNA_02122 0.16 -0.4
2,274,061 - CCNA_02122 0.25 +1.6
2,274,089 - CCNA_02122 0.29 -0.7
2,274,183 + CCNA_02122 0.42 +0.5
2,274,207 + CCNA_02122 0.45 -0.7
2,274,219 + CCNA_02122 0.47 -0.2
2,274,229 + CCNA_02122 0.49 +0.0
2,274,237 - CCNA_02122 0.50 -3.1
2,274,237 - CCNA_02122 0.50 +0.1
2,274,269 - CCNA_02122 0.54 -3.3
2,274,270 - CCNA_02122 0.54 -1.4
2,274,280 - CCNA_02122 0.56 -2.2
2,274,367 + CCNA_02122 0.68 -1.0
2,274,367 + CCNA_02122 0.68 +0.2
2,274,375 - CCNA_02122 0.69 -0.6
2,274,380 + CCNA_02122 0.70 -0.2
2,274,453 - CCNA_02122 0.80 -0.8
2,274,532 - -0.7
2,274,556 - +1.4
2,274,576 - +0.4
2,275,412 + +0.6
2,275,463 - +0.6
2,275,463 - +0.4
2,275,463 - -1.0
2,275,463 - -0.6
2,275,463 - +0.4
2,275,463 - -1.5
2,275,463 - +0.0
2,275,684 - CCNA_02124 0.25 -0.1
2,275,728 - CCNA_02124 0.35 +0.2
2,275,756 - CCNA_02124 0.41 +0.8
2,275,780 - CCNA_02124 0.46 -1.2
2,275,792 + CCNA_02124 0.49 -1.1
2,275,800 - CCNA_02124 0.50 +0.8
2,275,828 + CCNA_02124 0.56 +0.2
2,275,836 - CCNA_02124 0.58 +1.0
2,275,836 - CCNA_02124 0.58 -0.2
2,275,846 - CCNA_02124 0.60 +2.2
2,275,846 - CCNA_02124 0.60 +0.4
2,275,928 - CCNA_02124 0.78 +1.3
2,276,220 + -0.9
2,276,261 - +1.7
2,276,277 - +1.1
2,276,309 + +1.1
2,276,357 - +1.3
2,276,371 - +2.9
2,276,406 + -1.3

Or see this region's nucleotide sequence