Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02087 and CCNA_02088 are separated by 88 nucleotides CCNA_02088 and CCNA_02089 are separated by 4 nucleotides CCNA_02089 and CCNA_02090 overlap by 1 nucleotides
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
CCNA_02088: CCNA_02088 - HesB protein family, at 2,237,630 to 2,237,962
_02088
CCNA_02089: CCNA_02089 - hypothetical protein, at 2,237,967 to 2,238,341
_02089
CCNA_02090: CCNA_02090 - exodeoxyribonuclease III, at 2,238,341 to 2,239,129
_02090
Position (kb)
2237
2238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2236.651 kb on + strand, within CCNA_02087 at 2236.669 kb on - strand, within CCNA_02087 at 2236.717 kb on + strand, within CCNA_02087 at 2236.717 kb on + strand, within CCNA_02087 at 2236.717 kb on + strand, within CCNA_02087 at 2236.717 kb on + strand, within CCNA_02087 at 2236.722 kb on + strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.746 kb on + strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.773 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.782 kb on - strand, within CCNA_02087 at 2236.791 kb on - strand, within CCNA_02087 at 2236.816 kb on + strand, within CCNA_02087 at 2236.830 kb on + strand, within CCNA_02087 at 2236.830 kb on + strand, within CCNA_02087 at 2236.833 kb on - strand, within CCNA_02087 at 2236.838 kb on - strand, within CCNA_02087 at 2236.843 kb on - strand, within CCNA_02087 at 2236.853 kb on + strand, within CCNA_02087 at 2236.861 kb on - strand, within CCNA_02087 at 2236.867 kb on - strand, within CCNA_02087 at 2236.902 kb on - strand, within CCNA_02087 at 2236.938 kb on - strand, within CCNA_02087 at 2236.943 kb on + strand, within CCNA_02087 at 2236.943 kb on + strand, within CCNA_02087 at 2236.950 kb on - strand, within CCNA_02087 at 2236.982 kb on - strand, within CCNA_02087 at 2236.982 kb on - strand, within CCNA_02087 at 2236.982 kb on - strand, within CCNA_02087 at 2237.001 kb on - strand, within CCNA_02087 at 2237.005 kb on - strand, within CCNA_02087 at 2237.028 kb on - strand, within CCNA_02087 at 2237.041 kb on - strand, within CCNA_02087 at 2237.089 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.108 kb on + strand, within CCNA_02087 at 2237.108 kb on + strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand at 2237.126 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087 at 2237.151 kb on - strand, within CCNA_02087 at 2237.151 kb on - strand, within CCNA_02087 at 2237.151 kb on - strand, within CCNA_02087 at 2237.152 kb on - strand, within CCNA_02087 at 2237.152 kb on - strand, within CCNA_02087 at 2237.196 kb on + strand, within CCNA_02087 at 2237.204 kb on - strand, within CCNA_02087 at 2237.205 kb on - strand, within CCNA_02087 at 2237.212 kb on + strand, within CCNA_02087 at 2237.227 kb on + strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.235 kb on - strand, within CCNA_02087 at 2237.242 kb on - strand, within CCNA_02087 at 2237.246 kb on + strand, within CCNA_02087 at 2237.252 kb on + strand, within CCNA_02087 at 2237.271 kb on - strand, within CCNA_02087 at 2237.283 kb on - strand, within CCNA_02087 at 2237.288 kb on + strand, within CCNA_02087 at 2237.319 kb on + strand, within CCNA_02087 at 2237.321 kb on - strand, within CCNA_02087 at 2237.326 kb on + strand, within CCNA_02087 at 2237.326 kb on + strand, within CCNA_02087 at 2237.334 kb on - strand, within CCNA_02087 at 2237.368 kb on + strand, within CCNA_02087 at 2237.383 kb on - strand, within CCNA_02087 at 2237.398 kb on + strand, within CCNA_02087 at 2237.439 kb on + strand at 2237.447 kb on - strand at 2237.447 kb on - strand at 2237.462 kb on + strand at 2237.463 kb on + strand at 2237.470 kb on - strand at 2237.496 kb on + strand at 2237.500 kb on + strand at 2237.531 kb on + strand at 2237.537 kb on + strand at 2237.537 kb on + strand at 2237.545 kb on - strand at 2237.575 kb on + strand at 2237.583 kb on - strand at 2237.583 kb on - strand at 2237.595 kb on + strand at 2237.599 kb on + strand at 2237.603 kb on - strand at 2237.603 kb on - strand at 2237.603 kb on - strand at 2237.603 kb on - strand at 2237.603 kb on - strand at 2237.627 kb on + strand at 2237.635 kb on - strand at 2237.635 kb on - strand at 2237.706 kb on + strand, within CCNA_02088 at 2237.706 kb on + strand, within CCNA_02088 at 2237.778 kb on + strand, within CCNA_02088 at 2237.974 kb on + strand at 2237.982 kb on - strand at 2238.012 kb on + strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.015 kb on - strand, within CCNA_02089 at 2238.020 kb on - strand, within CCNA_02089 at 2238.034 kb on + strand, within CCNA_02089 at 2238.042 kb on - strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.103 kb on + strand, within CCNA_02089 at 2238.108 kb on + strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.111 kb on - strand, within CCNA_02089 at 2238.146 kb on + strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.174 kb on + strand, within CCNA_02089 at 2238.177 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.182 kb on - strand, within CCNA_02089 at 2238.200 kb on - strand, within CCNA_02089 at 2238.298 kb on + strand, within CCNA_02089 at 2238.298 kb on + strand, within CCNA_02089 at 2238.298 kb on + strand, within CCNA_02089 at 2238.298 kb on + strand, within CCNA_02089 at 2238.298 kb on + strand, within CCNA_02089 at 2238.421 kb on + strand, within CCNA_02090 at 2238.427 kb on - strand, within CCNA_02090 at 2238.450 kb on - strand, within CCNA_02090 at 2238.568 kb on + strand, within CCNA_02090 at 2238.578 kb on - strand, within CCNA_02090 at 2238.660 kb on - strand, within CCNA_02090 at 2238.684 kb on - strand, within CCNA_02090 at 2238.704 kb on - strand, within CCNA_02090 at 2238.704 kb on - strand, within CCNA_02090 at 2238.704 kb on - strand, within CCNA_02090 at 2238.719 kb on - strand, within CCNA_02090 at 2238.744 kb on + strand, within CCNA_02090 at 2238.748 kb on + strand, within CCNA_02090 at 2238.748 kb on + strand, within CCNA_02090 at 2238.756 kb on - strand at 2238.758 kb on + strand, within CCNA_02090 at 2238.859 kb on + strand, within CCNA_02090 at 2238.859 kb on + strand, within CCNA_02090 at 2238.867 kb on - strand, within CCNA_02090 at 2238.881 kb on + strand, within CCNA_02090 at 2238.883 kb on + strand, within CCNA_02090 at 2238.889 kb on - strand, within CCNA_02090 at 2238.889 kb on - strand, within CCNA_02090 at 2238.918 kb on + strand, within CCNA_02090 at 2238.918 kb on + strand, within CCNA_02090 at 2238.926 kb on - strand, within CCNA_02090
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,236,651 + CCNA_02087 0.25 +0.8 2,236,669 - CCNA_02087 0.26 +0.6 2,236,717 + CCNA_02087 0.30 -1.3 2,236,717 + CCNA_02087 0.30 +0.6 2,236,717 + CCNA_02087 0.30 -0.7 2,236,717 + CCNA_02087 0.30 -0.2 2,236,722 + CCNA_02087 0.31 -1.0 2,236,725 - CCNA_02087 0.31 +1.8 2,236,725 - CCNA_02087 0.31 +1.0 2,236,725 - CCNA_02087 0.31 +1.0 2,236,746 + CCNA_02087 0.33 +0.0 2,236,754 - CCNA_02087 0.34 +0.7 2,236,754 - CCNA_02087 0.34 +1.1 2,236,772 + CCNA_02087 0.35 -1.3 2,236,772 + CCNA_02087 0.35 -0.9 2,236,772 + CCNA_02087 0.35 -1.6 2,236,773 - CCNA_02087 0.35 +1.1 2,236,780 - CCNA_02087 0.36 +0.7 2,236,780 - CCNA_02087 0.36 +0.4 2,236,780 - CCNA_02087 0.36 +0.7 2,236,780 - CCNA_02087 0.36 +1.5 2,236,780 - CCNA_02087 0.36 +0.4 2,236,780 - CCNA_02087 0.36 +0.3 2,236,780 - CCNA_02087 0.36 +1.5 2,236,782 - CCNA_02087 0.36 +0.2 2,236,791 - CCNA_02087 0.37 +1.6 2,236,816 + CCNA_02087 0.39 -3.3 2,236,830 + CCNA_02087 0.40 -1.2 2,236,830 + CCNA_02087 0.40 -1.9 2,236,833 - CCNA_02087 0.40 +1.3 2,236,838 - CCNA_02087 0.41 +1.7 2,236,843 - CCNA_02087 0.41 -0.0 2,236,853 + CCNA_02087 0.42 -1.4 2,236,861 - CCNA_02087 0.43 +0.8 2,236,867 - CCNA_02087 0.43 +0.2 2,236,902 - CCNA_02087 0.46 +0.7 2,236,938 - CCNA_02087 0.49 +1.7 2,236,943 + CCNA_02087 0.49 -1.6 2,236,943 + CCNA_02087 0.49 -1.2 2,236,950 - CCNA_02087 0.50 -0.1 2,236,982 - CCNA_02087 0.53 +1.3 2,236,982 - CCNA_02087 0.53 +2.0 2,236,982 - CCNA_02087 0.53 +1.0 2,237,001 - CCNA_02087 0.54 +0.5 2,237,005 - CCNA_02087 0.55 -0.1 2,237,028 - CCNA_02087 0.57 +1.0 2,237,041 - CCNA_02087 0.58 +1.1 2,237,089 + CCNA_02087 0.62 -1.5 2,237,092 - CCNA_02087 0.62 +0.3 2,237,096 - CCNA_02087 0.62 +1.0 2,237,108 + CCNA_02087 0.63 +0.6 2,237,108 + CCNA_02087 0.63 -0.7 2,237,116 - CCNA_02087 0.64 +0.2 2,237,116 - -0.8 2,237,126 - CCNA_02087 0.65 +1.5 2,237,143 + CCNA_02087 0.66 -1.0 2,237,143 + CCNA_02087 0.66 -0.6 2,237,144 + CCNA_02087 0.66 -2.0 2,237,144 + CCNA_02087 0.66 -0.4 2,237,151 - CCNA_02087 0.67 +0.7 2,237,151 - CCNA_02087 0.67 +0.6 2,237,151 - CCNA_02087 0.67 +0.4 2,237,152 - CCNA_02087 0.67 +0.2 2,237,152 - CCNA_02087 0.67 +1.0 2,237,196 + CCNA_02087 0.71 -1.9 2,237,204 - CCNA_02087 0.71 +0.8 2,237,205 - CCNA_02087 0.72 +0.1 2,237,212 + CCNA_02087 0.72 -0.6 2,237,227 + CCNA_02087 0.73 +0.2 2,237,235 - CCNA_02087 0.74 +0.5 2,237,235 - CCNA_02087 0.74 +0.3 2,237,235 - CCNA_02087 0.74 +2.2 2,237,242 - CCNA_02087 0.75 +0.6 2,237,246 + CCNA_02087 0.75 -1.0 2,237,252 + CCNA_02087 0.76 -2.1 2,237,271 - CCNA_02087 0.77 -0.1 2,237,283 - CCNA_02087 0.78 -0.0 2,237,288 + CCNA_02087 0.79 -1.2 2,237,319 + CCNA_02087 0.81 +1.7 2,237,321 - CCNA_02087 0.81 -0.7 2,237,326 + CCNA_02087 0.82 -0.2 2,237,326 + CCNA_02087 0.82 -1.2 2,237,334 - CCNA_02087 0.82 +2.2 2,237,368 + CCNA_02087 0.85 -0.5 2,237,383 - CCNA_02087 0.87 -0.2 2,237,398 + CCNA_02087 0.88 -1.2 2,237,439 + +1.3 2,237,447 - -0.7 2,237,447 - -1.4 2,237,462 + -2.9 2,237,463 + -0.8 2,237,470 - -0.6 2,237,496 + -1.4 2,237,500 + -1.1 2,237,531 + -2.1 2,237,537 + -0.6 2,237,537 + -1.5 2,237,545 - -0.9 2,237,575 + -0.7 2,237,583 - -0.6 2,237,583 - -0.2 2,237,595 + +2.2 2,237,599 + +0.7 2,237,603 - +1.2 2,237,603 - +0.2 2,237,603 - -0.9 2,237,603 - -0.8 2,237,603 - -2.0 2,237,627 + +0.7 2,237,635 - -0.6 2,237,635 - -0.4 2,237,706 + CCNA_02088 0.23 -0.6 2,237,706 + CCNA_02088 0.23 -0.1 2,237,778 + CCNA_02088 0.44 +2.2 2,237,974 + +0.8 2,237,982 - +1.2 2,238,012 + CCNA_02089 0.12 +1.3 2,238,015 - CCNA_02089 0.13 -0.7 2,238,015 - CCNA_02089 0.13 +1.0 2,238,015 - CCNA_02089 0.13 -0.4 2,238,015 - CCNA_02089 0.13 +1.6 2,238,015 - CCNA_02089 0.13 -0.8 2,238,020 - CCNA_02089 0.14 -1.2 2,238,034 + CCNA_02089 0.18 +0.5 2,238,042 - CCNA_02089 0.20 +0.5 2,238,103 + CCNA_02089 0.36 -0.1 2,238,103 + CCNA_02089 0.36 +1.0 2,238,103 + CCNA_02089 0.36 -0.8 2,238,103 + CCNA_02089 0.36 +0.8 2,238,103 + CCNA_02089 0.36 +1.7 2,238,103 + CCNA_02089 0.36 +0.8 2,238,108 + CCNA_02089 0.38 +0.4 2,238,111 - CCNA_02089 0.38 -0.2 2,238,111 - CCNA_02089 0.38 -1.2 2,238,111 - CCNA_02089 0.38 -0.1 2,238,111 - CCNA_02089 0.38 -0.6 2,238,111 - CCNA_02089 0.38 -1.2 2,238,111 - CCNA_02089 0.38 -0.9 2,238,111 - CCNA_02089 0.38 +0.5 2,238,111 - CCNA_02089 0.38 +0.1 2,238,146 + CCNA_02089 0.48 -1.2 2,238,174 + CCNA_02089 0.55 +0.4 2,238,174 + CCNA_02089 0.55 +1.2 2,238,174 + CCNA_02089 0.55 -1.1 2,238,177 - CCNA_02089 0.56 +1.3 2,238,182 - CCNA_02089 0.57 +2.0 2,238,182 - CCNA_02089 0.57 -0.4 2,238,182 - CCNA_02089 0.57 -1.4 2,238,182 - CCNA_02089 0.57 +0.9 2,238,200 - CCNA_02089 0.62 -1.1 2,238,298 + CCNA_02089 0.88 -3.2 2,238,298 + CCNA_02089 0.88 -0.4 2,238,298 + CCNA_02089 0.88 +0.9 2,238,298 + CCNA_02089 0.88 -0.3 2,238,298 + CCNA_02089 0.88 +0.3 2,238,421 + CCNA_02090 0.10 -0.4 2,238,427 - CCNA_02090 0.11 -1.2 2,238,450 - CCNA_02090 0.14 +0.2 2,238,568 + CCNA_02090 0.29 +0.2 2,238,578 - CCNA_02090 0.30 -1.9 2,238,660 - CCNA_02090 0.40 +1.8 2,238,684 - CCNA_02090 0.43 -1.6 2,238,704 - CCNA_02090 0.46 -3.2 2,238,704 - CCNA_02090 0.46 -2.3 2,238,704 - CCNA_02090 0.46 +0.2 2,238,719 - CCNA_02090 0.48 -2.8 2,238,744 + CCNA_02090 0.51 +0.9 2,238,748 + CCNA_02090 0.52 +0.6 2,238,748 + CCNA_02090 0.52 +0.1 2,238,756 - +3.2 2,238,758 + CCNA_02090 0.53 +0.9 2,238,859 + CCNA_02090 0.66 +1.5 2,238,859 + CCNA_02090 0.66 +0.4 2,238,867 - CCNA_02090 0.67 -0.2 2,238,881 + CCNA_02090 0.68 +0.3 2,238,883 + CCNA_02090 0.69 +2.4 2,238,889 - CCNA_02090 0.69 +1.0 2,238,889 - CCNA_02090 0.69 +0.8 2,238,918 + CCNA_02090 0.73 -0.3 2,238,918 + CCNA_02090 0.73 -0.8 2,238,926 - CCNA_02090 0.74 +0.4
Or see this region's nucleotide sequence