Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02088

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02087 and CCNA_02088 are separated by 88 nucleotidesCCNA_02088 and CCNA_02089 are separated by 4 nucleotidesCCNA_02089 and CCNA_02090 overlap by 1 nucleotides CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541 _02087 CCNA_02088: CCNA_02088 - HesB protein family, at 2,237,630 to 2,237,962 _02088 CCNA_02089: CCNA_02089 - hypothetical protein, at 2,237,967 to 2,238,341 _02089 CCNA_02090: CCNA_02090 - exodeoxyribonuclease III, at 2,238,341 to 2,239,129 _02090 Position (kb) 2237 2238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2236.651 kb on + strand, within CCNA_02087at 2236.669 kb on - strand, within CCNA_02087at 2236.717 kb on + strand, within CCNA_02087at 2236.717 kb on + strand, within CCNA_02087at 2236.717 kb on + strand, within CCNA_02087at 2236.717 kb on + strand, within CCNA_02087at 2236.722 kb on + strand, within CCNA_02087at 2236.725 kb on - strand, within CCNA_02087at 2236.725 kb on - strand, within CCNA_02087at 2236.725 kb on - strand, within CCNA_02087at 2236.746 kb on + strand, within CCNA_02087at 2236.754 kb on - strand, within CCNA_02087at 2236.754 kb on - strand, within CCNA_02087at 2236.772 kb on + strand, within CCNA_02087at 2236.772 kb on + strand, within CCNA_02087at 2236.772 kb on + strand, within CCNA_02087at 2236.773 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.780 kb on - strand, within CCNA_02087at 2236.782 kb on - strand, within CCNA_02087at 2236.791 kb on - strand, within CCNA_02087at 2236.816 kb on + strand, within CCNA_02087at 2236.830 kb on + strand, within CCNA_02087at 2236.830 kb on + strand, within CCNA_02087at 2236.833 kb on - strand, within CCNA_02087at 2236.838 kb on - strand, within CCNA_02087at 2236.843 kb on - strand, within CCNA_02087at 2236.853 kb on + strand, within CCNA_02087at 2236.861 kb on - strand, within CCNA_02087at 2236.867 kb on - strand, within CCNA_02087at 2236.902 kb on - strand, within CCNA_02087at 2236.938 kb on - strand, within CCNA_02087at 2236.943 kb on + strand, within CCNA_02087at 2236.943 kb on + strand, within CCNA_02087at 2236.950 kb on - strand, within CCNA_02087at 2236.982 kb on - strand, within CCNA_02087at 2236.982 kb on - strand, within CCNA_02087at 2236.982 kb on - strand, within CCNA_02087at 2237.001 kb on - strand, within CCNA_02087at 2237.005 kb on - strand, within CCNA_02087at 2237.028 kb on - strand, within CCNA_02087at 2237.041 kb on - strand, within CCNA_02087at 2237.089 kb on + strand, within CCNA_02087at 2237.092 kb on - strand, within CCNA_02087at 2237.096 kb on - strand, within CCNA_02087at 2237.108 kb on + strand, within CCNA_02087at 2237.108 kb on + strand, within CCNA_02087at 2237.116 kb on - strand, within CCNA_02087at 2237.116 kb on - strandat 2237.126 kb on - strand, within CCNA_02087at 2237.143 kb on + strand, within CCNA_02087at 2237.143 kb on + strand, within CCNA_02087at 2237.144 kb on + strand, within CCNA_02087at 2237.144 kb on + strand, within CCNA_02087at 2237.151 kb on - strand, within CCNA_02087at 2237.151 kb on - strand, within CCNA_02087at 2237.151 kb on - strand, within CCNA_02087at 2237.152 kb on - strand, within CCNA_02087at 2237.152 kb on - strand, within CCNA_02087at 2237.196 kb on + strand, within CCNA_02087at 2237.204 kb on - strand, within CCNA_02087at 2237.205 kb on - strand, within CCNA_02087at 2237.212 kb on + strand, within CCNA_02087at 2237.227 kb on + strand, within CCNA_02087at 2237.235 kb on - strand, within CCNA_02087at 2237.235 kb on - strand, within CCNA_02087at 2237.235 kb on - strand, within CCNA_02087at 2237.242 kb on - strand, within CCNA_02087at 2237.246 kb on + strand, within CCNA_02087at 2237.252 kb on + strand, within CCNA_02087at 2237.271 kb on - strand, within CCNA_02087at 2237.283 kb on - strand, within CCNA_02087at 2237.288 kb on + strand, within CCNA_02087at 2237.319 kb on + strand, within CCNA_02087at 2237.321 kb on - strand, within CCNA_02087at 2237.326 kb on + strand, within CCNA_02087at 2237.326 kb on + strand, within CCNA_02087at 2237.334 kb on - strand, within CCNA_02087at 2237.368 kb on + strand, within CCNA_02087at 2237.383 kb on - strand, within CCNA_02087at 2237.398 kb on + strand, within CCNA_02087at 2237.439 kb on + strandat 2237.447 kb on - strandat 2237.447 kb on - strandat 2237.462 kb on + strandat 2237.463 kb on + strandat 2237.470 kb on - strandat 2237.496 kb on + strandat 2237.500 kb on + strandat 2237.531 kb on + strandat 2237.537 kb on + strandat 2237.537 kb on + strandat 2237.545 kb on - strandat 2237.575 kb on + strandat 2237.583 kb on - strandat 2237.583 kb on - strandat 2237.595 kb on + strandat 2237.599 kb on + strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.603 kb on - strandat 2237.627 kb on + strandat 2237.635 kb on - strandat 2237.635 kb on - strandat 2237.706 kb on + strand, within CCNA_02088at 2237.706 kb on + strand, within CCNA_02088at 2237.778 kb on + strand, within CCNA_02088at 2237.974 kb on + strandat 2237.982 kb on - strandat 2238.012 kb on + strand, within CCNA_02089at 2238.015 kb on - strand, within CCNA_02089at 2238.015 kb on - strand, within CCNA_02089at 2238.015 kb on - strand, within CCNA_02089at 2238.015 kb on - strand, within CCNA_02089at 2238.015 kb on - strand, within CCNA_02089at 2238.020 kb on - strand, within CCNA_02089at 2238.034 kb on + strand, within CCNA_02089at 2238.042 kb on - strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.103 kb on + strand, within CCNA_02089at 2238.108 kb on + strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.111 kb on - strand, within CCNA_02089at 2238.146 kb on + strand, within CCNA_02089at 2238.174 kb on + strand, within CCNA_02089at 2238.174 kb on + strand, within CCNA_02089at 2238.174 kb on + strand, within CCNA_02089at 2238.177 kb on - strand, within CCNA_02089at 2238.182 kb on - strand, within CCNA_02089at 2238.182 kb on - strand, within CCNA_02089at 2238.182 kb on - strand, within CCNA_02089at 2238.182 kb on - strand, within CCNA_02089at 2238.200 kb on - strand, within CCNA_02089at 2238.298 kb on + strand, within CCNA_02089at 2238.298 kb on + strand, within CCNA_02089at 2238.298 kb on + strand, within CCNA_02089at 2238.298 kb on + strand, within CCNA_02089at 2238.298 kb on + strand, within CCNA_02089at 2238.421 kb on + strand, within CCNA_02090at 2238.427 kb on - strand, within CCNA_02090at 2238.450 kb on - strand, within CCNA_02090at 2238.568 kb on + strand, within CCNA_02090at 2238.578 kb on - strand, within CCNA_02090at 2238.660 kb on - strand, within CCNA_02090at 2238.684 kb on - strand, within CCNA_02090at 2238.704 kb on - strand, within CCNA_02090at 2238.704 kb on - strand, within CCNA_02090at 2238.704 kb on - strand, within CCNA_02090at 2238.719 kb on - strand, within CCNA_02090at 2238.744 kb on + strand, within CCNA_02090at 2238.748 kb on + strand, within CCNA_02090at 2238.748 kb on + strand, within CCNA_02090at 2238.756 kb on - strandat 2238.758 kb on + strand, within CCNA_02090at 2238.859 kb on + strand, within CCNA_02090at 2238.859 kb on + strand, within CCNA_02090at 2238.867 kb on - strand, within CCNA_02090at 2238.881 kb on + strand, within CCNA_02090at 2238.883 kb on + strand, within CCNA_02090at 2238.889 kb on - strand, within CCNA_02090at 2238.889 kb on - strand, within CCNA_02090at 2238.918 kb on + strand, within CCNA_02090at 2238.918 kb on + strand, within CCNA_02090at 2238.926 kb on - strand, within CCNA_02090

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,236,651 + CCNA_02087 0.25 +0.8
2,236,669 - CCNA_02087 0.26 +0.6
2,236,717 + CCNA_02087 0.30 -1.3
2,236,717 + CCNA_02087 0.30 +0.6
2,236,717 + CCNA_02087 0.30 -0.7
2,236,717 + CCNA_02087 0.30 -0.2
2,236,722 + CCNA_02087 0.31 -1.0
2,236,725 - CCNA_02087 0.31 +1.8
2,236,725 - CCNA_02087 0.31 +1.0
2,236,725 - CCNA_02087 0.31 +1.0
2,236,746 + CCNA_02087 0.33 +0.0
2,236,754 - CCNA_02087 0.34 +0.7
2,236,754 - CCNA_02087 0.34 +1.1
2,236,772 + CCNA_02087 0.35 -1.3
2,236,772 + CCNA_02087 0.35 -0.9
2,236,772 + CCNA_02087 0.35 -1.6
2,236,773 - CCNA_02087 0.35 +1.1
2,236,780 - CCNA_02087 0.36 +0.7
2,236,780 - CCNA_02087 0.36 +0.4
2,236,780 - CCNA_02087 0.36 +0.7
2,236,780 - CCNA_02087 0.36 +1.5
2,236,780 - CCNA_02087 0.36 +0.4
2,236,780 - CCNA_02087 0.36 +0.3
2,236,780 - CCNA_02087 0.36 +1.5
2,236,782 - CCNA_02087 0.36 +0.2
2,236,791 - CCNA_02087 0.37 +1.6
2,236,816 + CCNA_02087 0.39 -3.3
2,236,830 + CCNA_02087 0.40 -1.2
2,236,830 + CCNA_02087 0.40 -1.9
2,236,833 - CCNA_02087 0.40 +1.3
2,236,838 - CCNA_02087 0.41 +1.7
2,236,843 - CCNA_02087 0.41 -0.0
2,236,853 + CCNA_02087 0.42 -1.4
2,236,861 - CCNA_02087 0.43 +0.8
2,236,867 - CCNA_02087 0.43 +0.2
2,236,902 - CCNA_02087 0.46 +0.7
2,236,938 - CCNA_02087 0.49 +1.7
2,236,943 + CCNA_02087 0.49 -1.6
2,236,943 + CCNA_02087 0.49 -1.2
2,236,950 - CCNA_02087 0.50 -0.1
2,236,982 - CCNA_02087 0.53 +1.3
2,236,982 - CCNA_02087 0.53 +2.0
2,236,982 - CCNA_02087 0.53 +1.0
2,237,001 - CCNA_02087 0.54 +0.5
2,237,005 - CCNA_02087 0.55 -0.1
2,237,028 - CCNA_02087 0.57 +1.0
2,237,041 - CCNA_02087 0.58 +1.1
2,237,089 + CCNA_02087 0.62 -1.5
2,237,092 - CCNA_02087 0.62 +0.3
2,237,096 - CCNA_02087 0.62 +1.0
2,237,108 + CCNA_02087 0.63 +0.6
2,237,108 + CCNA_02087 0.63 -0.7
2,237,116 - CCNA_02087 0.64 +0.2
2,237,116 - -0.8
2,237,126 - CCNA_02087 0.65 +1.5
2,237,143 + CCNA_02087 0.66 -1.0
2,237,143 + CCNA_02087 0.66 -0.6
2,237,144 + CCNA_02087 0.66 -2.0
2,237,144 + CCNA_02087 0.66 -0.4
2,237,151 - CCNA_02087 0.67 +0.7
2,237,151 - CCNA_02087 0.67 +0.6
2,237,151 - CCNA_02087 0.67 +0.4
2,237,152 - CCNA_02087 0.67 +0.2
2,237,152 - CCNA_02087 0.67 +1.0
2,237,196 + CCNA_02087 0.71 -1.9
2,237,204 - CCNA_02087 0.71 +0.8
2,237,205 - CCNA_02087 0.72 +0.1
2,237,212 + CCNA_02087 0.72 -0.6
2,237,227 + CCNA_02087 0.73 +0.2
2,237,235 - CCNA_02087 0.74 +0.5
2,237,235 - CCNA_02087 0.74 +0.3
2,237,235 - CCNA_02087 0.74 +2.2
2,237,242 - CCNA_02087 0.75 +0.6
2,237,246 + CCNA_02087 0.75 -1.0
2,237,252 + CCNA_02087 0.76 -2.1
2,237,271 - CCNA_02087 0.77 -0.1
2,237,283 - CCNA_02087 0.78 -0.0
2,237,288 + CCNA_02087 0.79 -1.2
2,237,319 + CCNA_02087 0.81 +1.7
2,237,321 - CCNA_02087 0.81 -0.7
2,237,326 + CCNA_02087 0.82 -0.2
2,237,326 + CCNA_02087 0.82 -1.2
2,237,334 - CCNA_02087 0.82 +2.2
2,237,368 + CCNA_02087 0.85 -0.5
2,237,383 - CCNA_02087 0.87 -0.2
2,237,398 + CCNA_02087 0.88 -1.2
2,237,439 + +1.3
2,237,447 - -0.7
2,237,447 - -1.4
2,237,462 + -2.9
2,237,463 + -0.8
2,237,470 - -0.6
2,237,496 + -1.4
2,237,500 + -1.1
2,237,531 + -2.1
2,237,537 + -0.6
2,237,537 + -1.5
2,237,545 - -0.9
2,237,575 + -0.7
2,237,583 - -0.6
2,237,583 - -0.2
2,237,595 + +2.2
2,237,599 + +0.7
2,237,603 - +1.2
2,237,603 - +0.2
2,237,603 - -0.9
2,237,603 - -0.8
2,237,603 - -2.0
2,237,627 + +0.7
2,237,635 - -0.6
2,237,635 - -0.4
2,237,706 + CCNA_02088 0.23 -0.6
2,237,706 + CCNA_02088 0.23 -0.1
2,237,778 + CCNA_02088 0.44 +2.2
2,237,974 + +0.8
2,237,982 - +1.2
2,238,012 + CCNA_02089 0.12 +1.3
2,238,015 - CCNA_02089 0.13 -0.7
2,238,015 - CCNA_02089 0.13 +1.0
2,238,015 - CCNA_02089 0.13 -0.4
2,238,015 - CCNA_02089 0.13 +1.6
2,238,015 - CCNA_02089 0.13 -0.8
2,238,020 - CCNA_02089 0.14 -1.2
2,238,034 + CCNA_02089 0.18 +0.5
2,238,042 - CCNA_02089 0.20 +0.5
2,238,103 + CCNA_02089 0.36 -0.1
2,238,103 + CCNA_02089 0.36 +1.0
2,238,103 + CCNA_02089 0.36 -0.8
2,238,103 + CCNA_02089 0.36 +0.8
2,238,103 + CCNA_02089 0.36 +1.7
2,238,103 + CCNA_02089 0.36 +0.8
2,238,108 + CCNA_02089 0.38 +0.4
2,238,111 - CCNA_02089 0.38 -0.2
2,238,111 - CCNA_02089 0.38 -1.2
2,238,111 - CCNA_02089 0.38 -0.1
2,238,111 - CCNA_02089 0.38 -0.6
2,238,111 - CCNA_02089 0.38 -1.2
2,238,111 - CCNA_02089 0.38 -0.9
2,238,111 - CCNA_02089 0.38 +0.5
2,238,111 - CCNA_02089 0.38 +0.1
2,238,146 + CCNA_02089 0.48 -1.2
2,238,174 + CCNA_02089 0.55 +0.4
2,238,174 + CCNA_02089 0.55 +1.2
2,238,174 + CCNA_02089 0.55 -1.1
2,238,177 - CCNA_02089 0.56 +1.3
2,238,182 - CCNA_02089 0.57 +2.0
2,238,182 - CCNA_02089 0.57 -0.4
2,238,182 - CCNA_02089 0.57 -1.4
2,238,182 - CCNA_02089 0.57 +0.9
2,238,200 - CCNA_02089 0.62 -1.1
2,238,298 + CCNA_02089 0.88 -3.2
2,238,298 + CCNA_02089 0.88 -0.4
2,238,298 + CCNA_02089 0.88 +0.9
2,238,298 + CCNA_02089 0.88 -0.3
2,238,298 + CCNA_02089 0.88 +0.3
2,238,421 + CCNA_02090 0.10 -0.4
2,238,427 - CCNA_02090 0.11 -1.2
2,238,450 - CCNA_02090 0.14 +0.2
2,238,568 + CCNA_02090 0.29 +0.2
2,238,578 - CCNA_02090 0.30 -1.9
2,238,660 - CCNA_02090 0.40 +1.8
2,238,684 - CCNA_02090 0.43 -1.6
2,238,704 - CCNA_02090 0.46 -3.2
2,238,704 - CCNA_02090 0.46 -2.3
2,238,704 - CCNA_02090 0.46 +0.2
2,238,719 - CCNA_02090 0.48 -2.8
2,238,744 + CCNA_02090 0.51 +0.9
2,238,748 + CCNA_02090 0.52 +0.6
2,238,748 + CCNA_02090 0.52 +0.1
2,238,756 - +3.2
2,238,758 + CCNA_02090 0.53 +0.9
2,238,859 + CCNA_02090 0.66 +1.5
2,238,859 + CCNA_02090 0.66 +0.4
2,238,867 - CCNA_02090 0.67 -0.2
2,238,881 + CCNA_02090 0.68 +0.3
2,238,883 + CCNA_02090 0.69 +2.4
2,238,889 - CCNA_02090 0.69 +1.0
2,238,889 - CCNA_02090 0.69 +0.8
2,238,918 + CCNA_02090 0.73 -0.3
2,238,918 + CCNA_02090 0.73 -0.8
2,238,926 - CCNA_02090 0.74 +0.4

Or see this region's nucleotide sequence