Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01999

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01997 and CCNA_01998 are separated by 26 nucleotidesCCNA_01998 and CCNA_01999 are separated by 177 nucleotidesCCNA_01999 and CCNA_02000 are separated by 139 nucleotides CCNA_01997: CCNA_01997 - ribosome recycling factor (RRF), at 2,143,739 to 2,144,305 _01997 CCNA_01998: CCNA_01998 - uridylate kinase, at 2,144,332 to 2,145,072 _01998 CCNA_01999: CCNA_01999 - translation elongation factor Ts (EF-Ts), at 2,145,250 to 2,146,188 _01999 CCNA_02000: CCNA_02000 - SSU ribosomal protein S2P, at 2,146,328 to 2,147,134 _02000 Position (kb) 2145 2146 2147Strain fitness (log2 ratio) -1 0 1 2at 2144.324 kb on - strandat 2144.362 kb on - strandat 2145.104 kb on + strandat 2145.117 kb on + strandat 2145.248 kb on + strandat 2145.256 kb on - strandat 2145.319 kb on - strandat 2146.268 kb on - strandat 2146.273 kb on - strandat 2146.273 kb on - strandat 2146.273 kb on - strandat 2146.273 kb on - strandat 2146.427 kb on - strand, within CCNA_02000at 2146.450 kb on - strand, within CCNA_02000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,144,324 - +2.6
2,144,362 - +1.8
2,145,104 + +0.9
2,145,117 + +1.4
2,145,248 + +0.3
2,145,256 - +2.2
2,145,319 - +1.9
2,146,268 - +2.3
2,146,273 - +2.1
2,146,273 - +1.8
2,146,273 - +2.0
2,146,273 - +2.1
2,146,427 - CCNA_02000 0.12 +2.1
2,146,450 - CCNA_02000 0.15 +0.7

Or see this region's nucleotide sequence