Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01985 and CCNA_01986 are separated by 85 nucleotides CCNA_01986 and CCNA_01987 overlap by 4 nucleotides CCNA_01987 and CCNA_01988 are separated by 9 nucleotides
CCNA_01985: CCNA_01985 - ABC transporter ATP-binding protein, at 2,130,432 to 2,132,201
_01985
CCNA_01986: CCNA_01986 - lipid-A-disaccharide synthase, at 2,132,287 to 2,133,483
_01986
CCNA_01987: CCNA_01987 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 2,133,480 to 2,134,322
_01987
CCNA_01988: CCNA_01988 - UDP-N-acetylglucosamine O-acyltransferase LpxA, at 2,134,332 to 2,135,123
_01988
Position (kb)
2132
2133
2134 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2131.386 kb on + strand, within CCNA_01985 at 2131.386 kb on + strand, within CCNA_01985 at 2131.394 kb on - strand, within CCNA_01985 at 2131.433 kb on - strand, within CCNA_01985 at 2131.446 kb on + strand, within CCNA_01985 at 2131.446 kb on + strand, within CCNA_01985 at 2131.467 kb on + strand, within CCNA_01985 at 2131.592 kb on - strand, within CCNA_01985 at 2131.592 kb on - strand, within CCNA_01985 at 2131.594 kb on + strand, within CCNA_01985 at 2131.594 kb on + strand, within CCNA_01985 at 2131.602 kb on - strand, within CCNA_01985 at 2131.602 kb on - strand, within CCNA_01985 at 2131.662 kb on + strand, within CCNA_01985 at 2131.662 kb on + strand, within CCNA_01985 at 2131.662 kb on + strand, within CCNA_01985 at 2131.685 kb on + strand, within CCNA_01985 at 2131.715 kb on - strand, within CCNA_01985 at 2131.848 kb on - strand, within CCNA_01985 at 2131.861 kb on + strand, within CCNA_01985 at 2131.861 kb on + strand, within CCNA_01985 at 2131.868 kb on - strand, within CCNA_01985 at 2131.869 kb on - strand, within CCNA_01985 at 2131.869 kb on - strand, within CCNA_01985 at 2131.869 kb on - strand, within CCNA_01985 at 2131.877 kb on + strand, within CCNA_01985 at 2131.969 kb on - strand, within CCNA_01985 at 2131.984 kb on + strand, within CCNA_01985 at 2132.041 kb on + strand at 2132.041 kb on + strand at 2132.049 kb on - strand at 2132.049 kb on - strand at 2132.049 kb on - strand at 2132.049 kb on - strand at 2132.096 kb on + strand at 2132.113 kb on + strand at 2132.121 kb on - strand at 2132.131 kb on - strand at 2132.166 kb on + strand at 2132.223 kb on + strand at 2132.233 kb on + strand at 2132.241 kb on - strand at 2132.241 kb on - strand at 2132.241 kb on - strand at 2132.241 kb on - strand at 2132.273 kb on - strand at 2132.299 kb on + strand at 2132.307 kb on - strand at 2132.334 kb on - strand at 2134.329 kb on + strand at 2134.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,131,386 + CCNA_01985 0.54 -1.5 2,131,386 + CCNA_01985 0.54 +1.2 2,131,394 - CCNA_01985 0.54 -0.2 2,131,433 - CCNA_01985 0.57 +1.1 2,131,446 + CCNA_01985 0.57 +0.2 2,131,446 + CCNA_01985 0.57 -1.4 2,131,467 + CCNA_01985 0.58 +0.7 2,131,592 - CCNA_01985 0.66 +0.9 2,131,592 - CCNA_01985 0.66 +0.5 2,131,594 + CCNA_01985 0.66 -0.1 2,131,594 + CCNA_01985 0.66 -0.6 2,131,602 - CCNA_01985 0.66 +0.3 2,131,602 - CCNA_01985 0.66 +2.1 2,131,662 + CCNA_01985 0.69 +0.1 2,131,662 + CCNA_01985 0.69 +0.4 2,131,662 + CCNA_01985 0.69 -0.8 2,131,685 + CCNA_01985 0.71 -2.3 2,131,715 - CCNA_01985 0.72 +1.7 2,131,848 - CCNA_01985 0.80 +1.3 2,131,861 + CCNA_01985 0.81 +0.4 2,131,861 + CCNA_01985 0.81 -1.3 2,131,868 - CCNA_01985 0.81 -0.0 2,131,869 - CCNA_01985 0.81 +0.4 2,131,869 - CCNA_01985 0.81 +0.1 2,131,869 - CCNA_01985 0.81 +0.3 2,131,877 + CCNA_01985 0.82 +0.2 2,131,969 - CCNA_01985 0.87 +1.2 2,131,984 + CCNA_01985 0.88 +0.2 2,132,041 + -0.7 2,132,041 + -2.2 2,132,049 - +0.6 2,132,049 - +0.5 2,132,049 - +0.3 2,132,049 - +0.8 2,132,096 + -0.8 2,132,113 + -0.5 2,132,121 - +1.2 2,132,131 - +1.2 2,132,166 + -0.6 2,132,223 + -0.1 2,132,233 + -0.3 2,132,241 - +3.5 2,132,241 - +1.0 2,132,241 - +0.6 2,132,241 - -0.7 2,132,273 - +0.9 2,132,299 + +0.0 2,132,307 - +0.9 2,132,334 - -0.3 2,134,329 + -1.7 2,134,337 - +0.6
Or see this region's nucleotide sequence