Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01986

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01985 and CCNA_01986 are separated by 85 nucleotidesCCNA_01986 and CCNA_01987 overlap by 4 nucleotidesCCNA_01987 and CCNA_01988 are separated by 9 nucleotides CCNA_01985: CCNA_01985 - ABC transporter ATP-binding protein, at 2,130,432 to 2,132,201 _01985 CCNA_01986: CCNA_01986 - lipid-A-disaccharide synthase, at 2,132,287 to 2,133,483 _01986 CCNA_01987: CCNA_01987 - UDP-2,3-diacylglucosamine pyrophosphatase LpxI, at 2,133,480 to 2,134,322 _01987 CCNA_01988: CCNA_01988 - UDP-N-acetylglucosamine O-acyltransferase LpxA, at 2,134,332 to 2,135,123 _01988 Position (kb) 2132 2133 2134Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2131.386 kb on + strand, within CCNA_01985at 2131.386 kb on + strand, within CCNA_01985at 2131.394 kb on - strand, within CCNA_01985at 2131.433 kb on - strand, within CCNA_01985at 2131.446 kb on + strand, within CCNA_01985at 2131.446 kb on + strand, within CCNA_01985at 2131.467 kb on + strand, within CCNA_01985at 2131.592 kb on - strand, within CCNA_01985at 2131.592 kb on - strand, within CCNA_01985at 2131.594 kb on + strand, within CCNA_01985at 2131.594 kb on + strand, within CCNA_01985at 2131.602 kb on - strand, within CCNA_01985at 2131.602 kb on - strand, within CCNA_01985at 2131.662 kb on + strand, within CCNA_01985at 2131.662 kb on + strand, within CCNA_01985at 2131.662 kb on + strand, within CCNA_01985at 2131.685 kb on + strand, within CCNA_01985at 2131.715 kb on - strand, within CCNA_01985at 2131.848 kb on - strand, within CCNA_01985at 2131.861 kb on + strand, within CCNA_01985at 2131.861 kb on + strand, within CCNA_01985at 2131.868 kb on - strand, within CCNA_01985at 2131.869 kb on - strand, within CCNA_01985at 2131.869 kb on - strand, within CCNA_01985at 2131.869 kb on - strand, within CCNA_01985at 2131.877 kb on + strand, within CCNA_01985at 2131.969 kb on - strand, within CCNA_01985at 2131.984 kb on + strand, within CCNA_01985at 2132.041 kb on + strandat 2132.041 kb on + strandat 2132.049 kb on - strandat 2132.049 kb on - strandat 2132.049 kb on - strandat 2132.049 kb on - strandat 2132.096 kb on + strandat 2132.113 kb on + strandat 2132.121 kb on - strandat 2132.131 kb on - strandat 2132.166 kb on + strandat 2132.223 kb on + strandat 2132.233 kb on + strandat 2132.241 kb on - strandat 2132.241 kb on - strandat 2132.241 kb on - strandat 2132.241 kb on - strandat 2132.273 kb on - strandat 2132.299 kb on + strandat 2132.307 kb on - strandat 2132.334 kb on - strandat 2134.329 kb on + strandat 2134.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,131,386 + CCNA_01985 0.54 -1.5
2,131,386 + CCNA_01985 0.54 +1.2
2,131,394 - CCNA_01985 0.54 -0.2
2,131,433 - CCNA_01985 0.57 +1.1
2,131,446 + CCNA_01985 0.57 +0.2
2,131,446 + CCNA_01985 0.57 -1.4
2,131,467 + CCNA_01985 0.58 +0.7
2,131,592 - CCNA_01985 0.66 +0.9
2,131,592 - CCNA_01985 0.66 +0.5
2,131,594 + CCNA_01985 0.66 -0.1
2,131,594 + CCNA_01985 0.66 -0.6
2,131,602 - CCNA_01985 0.66 +0.3
2,131,602 - CCNA_01985 0.66 +2.1
2,131,662 + CCNA_01985 0.69 +0.1
2,131,662 + CCNA_01985 0.69 +0.4
2,131,662 + CCNA_01985 0.69 -0.8
2,131,685 + CCNA_01985 0.71 -2.3
2,131,715 - CCNA_01985 0.72 +1.7
2,131,848 - CCNA_01985 0.80 +1.3
2,131,861 + CCNA_01985 0.81 +0.4
2,131,861 + CCNA_01985 0.81 -1.3
2,131,868 - CCNA_01985 0.81 -0.0
2,131,869 - CCNA_01985 0.81 +0.4
2,131,869 - CCNA_01985 0.81 +0.1
2,131,869 - CCNA_01985 0.81 +0.3
2,131,877 + CCNA_01985 0.82 +0.2
2,131,969 - CCNA_01985 0.87 +1.2
2,131,984 + CCNA_01985 0.88 +0.2
2,132,041 + -0.7
2,132,041 + -2.2
2,132,049 - +0.6
2,132,049 - +0.5
2,132,049 - +0.3
2,132,049 - +0.8
2,132,096 + -0.8
2,132,113 + -0.5
2,132,121 - +1.2
2,132,131 - +1.2
2,132,166 + -0.6
2,132,223 + -0.1
2,132,233 + -0.3
2,132,241 - +3.5
2,132,241 - +1.0
2,132,241 - +0.6
2,132,241 - -0.7
2,132,273 - +0.9
2,132,299 + +0.0
2,132,307 - +0.9
2,132,334 - -0.3
2,134,329 + -1.7
2,134,337 - +0.6

Or see this region's nucleotide sequence