Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01735 and CCNA_01736 are separated by 97 nucleotides CCNA_01736 and CCNA_01737 are separated by 14 nucleotides CCNA_01737 and CCNA_01738 are separated by 209 nucleotides
CCNA_01735: CCNA_01735 - PaaI thioesterase family protein, at 1,863,704 to 1,864,189
_01735
CCNA_01736: CCNA_01736 - TetR-family transcriptional regulator, at 1,864,287 to 1,864,886
_01736
CCNA_01737: CCNA_01737 - replicative DNA helicase, at 1,864,901 to 1,866,424
_01737
CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063
_01738
Position (kb)
1864
1865
1866
1867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1863.910 kb on + strand, within CCNA_01735 at 1863.910 kb on + strand, within CCNA_01735 at 1863.918 kb on - strand, within CCNA_01735 at 1863.918 kb on - strand, within CCNA_01735 at 1863.918 kb on - strand, within CCNA_01735 at 1863.931 kb on + strand, within CCNA_01735 at 1863.937 kb on + strand, within CCNA_01735 at 1863.950 kb on - strand at 1863.983 kb on + strand, within CCNA_01735 at 1863.996 kb on - strand, within CCNA_01735 at 1864.082 kb on + strand, within CCNA_01735 at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.184 kb on + strand at 1864.185 kb on - strand at 1864.192 kb on - strand at 1864.237 kb on + strand at 1864.294 kb on - strand at 1864.396 kb on - strand, within CCNA_01736 at 1864.408 kb on - strand, within CCNA_01736 at 1864.420 kb on - strand, within CCNA_01736 at 1864.431 kb on + strand, within CCNA_01736 at 1864.439 kb on - strand, within CCNA_01736 at 1864.439 kb on - strand, within CCNA_01736 at 1864.451 kb on + strand, within CCNA_01736 at 1864.465 kb on - strand, within CCNA_01736 at 1864.495 kb on - strand, within CCNA_01736 at 1864.560 kb on - strand, within CCNA_01736 at 1864.568 kb on - strand, within CCNA_01736 at 1864.580 kb on - strand, within CCNA_01736 at 1864.580 kb on - strand, within CCNA_01736 at 1864.589 kb on + strand, within CCNA_01736 at 1864.590 kb on + strand, within CCNA_01736 at 1864.597 kb on + strand, within CCNA_01736 at 1864.598 kb on - strand, within CCNA_01736 at 1864.603 kb on - strand, within CCNA_01736 at 1864.679 kb on + strand, within CCNA_01736 at 1864.724 kb on + strand, within CCNA_01736 at 1864.741 kb on + strand, within CCNA_01736 at 1864.751 kb on + strand, within CCNA_01736 at 1864.759 kb on - strand, within CCNA_01736 at 1864.759 kb on - strand, within CCNA_01736 at 1864.761 kb on + strand, within CCNA_01736 at 1864.769 kb on - strand, within CCNA_01736 at 1864.770 kb on + strand, within CCNA_01736 at 1864.785 kb on + strand, within CCNA_01736 at 1864.787 kb on + strand, within CCNA_01736 at 1864.802 kb on - strand, within CCNA_01736 at 1864.803 kb on - strand, within CCNA_01736 at 1864.838 kb on - strand at 1864.838 kb on - strand at 1864.858 kb on - strand at 1864.858 kb on - strand at 1864.858 kb on - strand at 1864.859 kb on + strand at 1864.910 kb on + strand at 1866.434 kb on - strand at 1866.496 kb on + strand at 1866.557 kb on + strand at 1866.602 kb on + strand at 1866.602 kb on + strand at 1866.602 kb on + strand at 1866.602 kb on + strand at 1866.652 kb on - strand at 1866.652 kb on - strand at 1866.719 kb on + strand at 1866.734 kb on + strand at 1866.740 kb on + strand at 1866.760 kb on - strand at 1866.803 kb on - strand at 1866.838 kb on - strand at 1866.867 kb on + strand at 1866.905 kb on + strand, within CCNA_01738 at 1866.985 kb on + strand, within CCNA_01738 at 1866.993 kb on - strand, within CCNA_01738 at 1867.028 kb on + strand, within CCNA_01738 at 1867.039 kb on - strand, within CCNA_01738 at 1867.074 kb on + strand, within CCNA_01738 at 1867.098 kb on + strand, within CCNA_01738 at 1867.147 kb on + strand, within CCNA_01738 at 1867.148 kb on - strand, within CCNA_01738 at 1867.205 kb on - strand, within CCNA_01738 at 1867.262 kb on + strand, within CCNA_01738 at 1867.269 kb on - strand, within CCNA_01738 at 1867.269 kb on - strand, within CCNA_01738 at 1867.306 kb on - strand, within CCNA_01738 at 1867.326 kb on + strand, within CCNA_01738 at 1867.358 kb on + strand, within CCNA_01738 at 1867.406 kb on + strand, within CCNA_01738 at 1867.407 kb on - strand, within CCNA_01738
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,863,910 + CCNA_01735 0.42 -1.9 1,863,910 + CCNA_01735 0.42 +0.6 1,863,918 - CCNA_01735 0.44 -0.3 1,863,918 - CCNA_01735 0.44 -0.5 1,863,918 - CCNA_01735 0.44 -1.4 1,863,931 + CCNA_01735 0.47 -0.6 1,863,937 + CCNA_01735 0.48 +1.8 1,863,950 - +0.2 1,863,983 + CCNA_01735 0.57 -1.2 1,863,996 - CCNA_01735 0.60 -0.0 1,864,082 + CCNA_01735 0.78 -0.6 1,864,184 + +1.0 1,864,184 + -0.1 1,864,184 + +1.4 1,864,184 + -1.4 1,864,184 + -1.8 1,864,184 + -0.5 1,864,184 + -1.3 1,864,185 - +0.1 1,864,192 - +1.6 1,864,237 + +1.0 1,864,294 - +0.9 1,864,396 - CCNA_01736 0.18 -0.6 1,864,408 - CCNA_01736 0.20 +0.0 1,864,420 - CCNA_01736 0.22 +1.6 1,864,431 + CCNA_01736 0.24 -1.7 1,864,439 - CCNA_01736 0.25 -0.8 1,864,439 - CCNA_01736 0.25 -1.0 1,864,451 + CCNA_01736 0.27 -1.0 1,864,465 - CCNA_01736 0.30 -0.2 1,864,495 - CCNA_01736 0.35 +1.2 1,864,560 - CCNA_01736 0.46 -1.7 1,864,568 - CCNA_01736 0.47 +1.0 1,864,580 - CCNA_01736 0.49 +2.3 1,864,580 - CCNA_01736 0.49 -0.3 1,864,589 + CCNA_01736 0.50 +1.0 1,864,590 + CCNA_01736 0.51 +3.0 1,864,597 + CCNA_01736 0.52 -0.0 1,864,598 - CCNA_01736 0.52 +0.2 1,864,603 - CCNA_01736 0.53 +0.2 1,864,679 + CCNA_01736 0.65 -0.1 1,864,724 + CCNA_01736 0.73 +0.0 1,864,741 + CCNA_01736 0.76 +2.1 1,864,751 + CCNA_01736 0.77 +0.7 1,864,759 - CCNA_01736 0.79 -0.5 1,864,759 - CCNA_01736 0.79 +0.1 1,864,761 + CCNA_01736 0.79 +1.4 1,864,769 - CCNA_01736 0.80 +0.8 1,864,770 + CCNA_01736 0.81 -0.0 1,864,785 + CCNA_01736 0.83 -0.3 1,864,787 + CCNA_01736 0.83 -1.0 1,864,802 - CCNA_01736 0.86 +1.0 1,864,803 - CCNA_01736 0.86 +1.8 1,864,838 - +1.0 1,864,838 - +1.2 1,864,858 - +0.6 1,864,858 - +1.6 1,864,858 - +1.1 1,864,859 + +0.1 1,864,910 + +1.0 1,866,434 - +1.0 1,866,496 + +0.8 1,866,557 + +1.7 1,866,602 + -1.0 1,866,602 + -0.8 1,866,602 + +0.8 1,866,602 + -1.2 1,866,652 - +1.1 1,866,652 - +1.4 1,866,719 + -0.3 1,866,734 + +0.5 1,866,740 + -2.8 1,866,760 - +3.2 1,866,803 - +0.9 1,866,838 - +1.9 1,866,867 + -1.3 1,866,905 + CCNA_01738 0.11 -1.0 1,866,985 + CCNA_01738 0.14 -1.3 1,866,993 - CCNA_01738 0.15 -0.5 1,867,028 + CCNA_01738 0.16 -1.9 1,867,039 - CCNA_01738 0.17 +4.0 1,867,074 + CCNA_01738 0.18 +3.2 1,867,098 + CCNA_01738 0.19 -0.8 1,867,147 + CCNA_01738 0.21 -0.8 1,867,148 - CCNA_01738 0.21 +0.4 1,867,205 - CCNA_01738 0.23 +1.0 1,867,262 + CCNA_01738 0.26 -0.9 1,867,269 - CCNA_01738 0.26 +0.7 1,867,269 - CCNA_01738 0.26 +0.5 1,867,306 - CCNA_01738 0.28 +0.6 1,867,326 + CCNA_01738 0.28 -1.9 1,867,358 + CCNA_01738 0.30 -0.6 1,867,406 + CCNA_01738 0.32 -0.3 1,867,407 - CCNA_01738 0.32 -0.8
Or see this region's nucleotide sequence