Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01737

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01735 and CCNA_01736 are separated by 97 nucleotidesCCNA_01736 and CCNA_01737 are separated by 14 nucleotidesCCNA_01737 and CCNA_01738 are separated by 209 nucleotides CCNA_01735: CCNA_01735 - PaaI thioesterase family protein, at 1,863,704 to 1,864,189 _01735 CCNA_01736: CCNA_01736 - TetR-family transcriptional regulator, at 1,864,287 to 1,864,886 _01736 CCNA_01737: CCNA_01737 - replicative DNA helicase, at 1,864,901 to 1,866,424 _01737 CCNA_01738: CCNA_01738 - TonB-dependent outer membrane receptor, at 1,866,634 to 1,869,063 _01738 Position (kb) 1864 1865 1866 1867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1863.910 kb on + strand, within CCNA_01735at 1863.910 kb on + strand, within CCNA_01735at 1863.918 kb on - strand, within CCNA_01735at 1863.918 kb on - strand, within CCNA_01735at 1863.918 kb on - strand, within CCNA_01735at 1863.931 kb on + strand, within CCNA_01735at 1863.937 kb on + strand, within CCNA_01735at 1863.950 kb on - strandat 1863.983 kb on + strand, within CCNA_01735at 1863.996 kb on - strand, within CCNA_01735at 1864.082 kb on + strand, within CCNA_01735at 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.184 kb on + strandat 1864.185 kb on - strandat 1864.192 kb on - strandat 1864.237 kb on + strandat 1864.294 kb on - strandat 1864.396 kb on - strand, within CCNA_01736at 1864.408 kb on - strand, within CCNA_01736at 1864.420 kb on - strand, within CCNA_01736at 1864.431 kb on + strand, within CCNA_01736at 1864.439 kb on - strand, within CCNA_01736at 1864.439 kb on - strand, within CCNA_01736at 1864.451 kb on + strand, within CCNA_01736at 1864.465 kb on - strand, within CCNA_01736at 1864.495 kb on - strand, within CCNA_01736at 1864.560 kb on - strand, within CCNA_01736at 1864.568 kb on - strand, within CCNA_01736at 1864.580 kb on - strand, within CCNA_01736at 1864.580 kb on - strand, within CCNA_01736at 1864.589 kb on + strand, within CCNA_01736at 1864.590 kb on + strand, within CCNA_01736at 1864.597 kb on + strand, within CCNA_01736at 1864.598 kb on - strand, within CCNA_01736at 1864.603 kb on - strand, within CCNA_01736at 1864.679 kb on + strand, within CCNA_01736at 1864.724 kb on + strand, within CCNA_01736at 1864.741 kb on + strand, within CCNA_01736at 1864.751 kb on + strand, within CCNA_01736at 1864.759 kb on - strand, within CCNA_01736at 1864.759 kb on - strand, within CCNA_01736at 1864.761 kb on + strand, within CCNA_01736at 1864.769 kb on - strand, within CCNA_01736at 1864.770 kb on + strand, within CCNA_01736at 1864.785 kb on + strand, within CCNA_01736at 1864.787 kb on + strand, within CCNA_01736at 1864.802 kb on - strand, within CCNA_01736at 1864.803 kb on - strand, within CCNA_01736at 1864.838 kb on - strandat 1864.838 kb on - strandat 1864.858 kb on - strandat 1864.858 kb on - strandat 1864.858 kb on - strandat 1864.859 kb on + strandat 1864.910 kb on + strandat 1866.434 kb on - strandat 1866.496 kb on + strandat 1866.557 kb on + strandat 1866.602 kb on + strandat 1866.602 kb on + strandat 1866.602 kb on + strandat 1866.602 kb on + strandat 1866.652 kb on - strandat 1866.652 kb on - strandat 1866.719 kb on + strandat 1866.734 kb on + strandat 1866.740 kb on + strandat 1866.760 kb on - strandat 1866.803 kb on - strandat 1866.838 kb on - strandat 1866.867 kb on + strandat 1866.905 kb on + strand, within CCNA_01738at 1866.985 kb on + strand, within CCNA_01738at 1866.993 kb on - strand, within CCNA_01738at 1867.028 kb on + strand, within CCNA_01738at 1867.039 kb on - strand, within CCNA_01738at 1867.074 kb on + strand, within CCNA_01738at 1867.098 kb on + strand, within CCNA_01738at 1867.147 kb on + strand, within CCNA_01738at 1867.148 kb on - strand, within CCNA_01738at 1867.205 kb on - strand, within CCNA_01738at 1867.262 kb on + strand, within CCNA_01738at 1867.269 kb on - strand, within CCNA_01738at 1867.269 kb on - strand, within CCNA_01738at 1867.306 kb on - strand, within CCNA_01738at 1867.326 kb on + strand, within CCNA_01738at 1867.358 kb on + strand, within CCNA_01738at 1867.406 kb on + strand, within CCNA_01738at 1867.407 kb on - strand, within CCNA_01738

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,863,910 + CCNA_01735 0.42 -1.9
1,863,910 + CCNA_01735 0.42 +0.6
1,863,918 - CCNA_01735 0.44 -0.3
1,863,918 - CCNA_01735 0.44 -0.5
1,863,918 - CCNA_01735 0.44 -1.4
1,863,931 + CCNA_01735 0.47 -0.6
1,863,937 + CCNA_01735 0.48 +1.8
1,863,950 - +0.2
1,863,983 + CCNA_01735 0.57 -1.2
1,863,996 - CCNA_01735 0.60 -0.0
1,864,082 + CCNA_01735 0.78 -0.6
1,864,184 + +1.0
1,864,184 + -0.1
1,864,184 + +1.4
1,864,184 + -1.4
1,864,184 + -1.8
1,864,184 + -0.5
1,864,184 + -1.3
1,864,185 - +0.1
1,864,192 - +1.6
1,864,237 + +1.0
1,864,294 - +0.9
1,864,396 - CCNA_01736 0.18 -0.6
1,864,408 - CCNA_01736 0.20 +0.0
1,864,420 - CCNA_01736 0.22 +1.6
1,864,431 + CCNA_01736 0.24 -1.7
1,864,439 - CCNA_01736 0.25 -0.8
1,864,439 - CCNA_01736 0.25 -1.0
1,864,451 + CCNA_01736 0.27 -1.0
1,864,465 - CCNA_01736 0.30 -0.2
1,864,495 - CCNA_01736 0.35 +1.2
1,864,560 - CCNA_01736 0.46 -1.7
1,864,568 - CCNA_01736 0.47 +1.0
1,864,580 - CCNA_01736 0.49 +2.3
1,864,580 - CCNA_01736 0.49 -0.3
1,864,589 + CCNA_01736 0.50 +1.0
1,864,590 + CCNA_01736 0.51 +3.0
1,864,597 + CCNA_01736 0.52 -0.0
1,864,598 - CCNA_01736 0.52 +0.2
1,864,603 - CCNA_01736 0.53 +0.2
1,864,679 + CCNA_01736 0.65 -0.1
1,864,724 + CCNA_01736 0.73 +0.0
1,864,741 + CCNA_01736 0.76 +2.1
1,864,751 + CCNA_01736 0.77 +0.7
1,864,759 - CCNA_01736 0.79 -0.5
1,864,759 - CCNA_01736 0.79 +0.1
1,864,761 + CCNA_01736 0.79 +1.4
1,864,769 - CCNA_01736 0.80 +0.8
1,864,770 + CCNA_01736 0.81 -0.0
1,864,785 + CCNA_01736 0.83 -0.3
1,864,787 + CCNA_01736 0.83 -1.0
1,864,802 - CCNA_01736 0.86 +1.0
1,864,803 - CCNA_01736 0.86 +1.8
1,864,838 - +1.0
1,864,838 - +1.2
1,864,858 - +0.6
1,864,858 - +1.6
1,864,858 - +1.1
1,864,859 + +0.1
1,864,910 + +1.0
1,866,434 - +1.0
1,866,496 + +0.8
1,866,557 + +1.7
1,866,602 + -1.0
1,866,602 + -0.8
1,866,602 + +0.8
1,866,602 + -1.2
1,866,652 - +1.1
1,866,652 - +1.4
1,866,719 + -0.3
1,866,734 + +0.5
1,866,740 + -2.8
1,866,760 - +3.2
1,866,803 - +0.9
1,866,838 - +1.9
1,866,867 + -1.3
1,866,905 + CCNA_01738 0.11 -1.0
1,866,985 + CCNA_01738 0.14 -1.3
1,866,993 - CCNA_01738 0.15 -0.5
1,867,028 + CCNA_01738 0.16 -1.9
1,867,039 - CCNA_01738 0.17 +4.0
1,867,074 + CCNA_01738 0.18 +3.2
1,867,098 + CCNA_01738 0.19 -0.8
1,867,147 + CCNA_01738 0.21 -0.8
1,867,148 - CCNA_01738 0.21 +0.4
1,867,205 - CCNA_01738 0.23 +1.0
1,867,262 + CCNA_01738 0.26 -0.9
1,867,269 - CCNA_01738 0.26 +0.7
1,867,269 - CCNA_01738 0.26 +0.5
1,867,306 - CCNA_01738 0.28 +0.6
1,867,326 + CCNA_01738 0.28 -1.9
1,867,358 + CCNA_01738 0.30 -0.6
1,867,406 + CCNA_01738 0.32 -0.3
1,867,407 - CCNA_01738 0.32 -0.8

Or see this region's nucleotide sequence