Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01627

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01625 and CCNA_01626 are separated by 178 nucleotidesCCNA_01626 and CCNA_01627 overlap by 4 nucleotidesCCNA_01627 and CCNA_01628 are separated by 11 nucleotidesCCNA_01628 and CCNA_01629 are separated by 123 nucleotides CCNA_01625: CCNA_01625 - aminobenzoyl-glutamate utilization protein B, at 1,745,770 to 1,747,389 _01625 CCNA_01626: CCNA_01626 - pyridoxal phosphate biosynthetic protein pdxJ, at 1,747,568 to 1,748,332 _01626 CCNA_01627: CCNA_01627 - Holo-(acyl-carrier protein) synthase, at 1,748,329 to 1,748,730 _01627 CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035 _01628 CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004 _01629 Position (kb) 1748 1749Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1747.353 kb on + strandat 1747.361 kb on - strandat 1747.361 kb on - strandat 1747.384 kb on - strandat 1747.390 kb on + strandat 1747.390 kb on + strandat 1747.440 kb on + strandat 1747.442 kb on - strandat 1747.442 kb on - strandat 1747.478 kb on + strandat 1747.486 kb on - strandat 1747.488 kb on + strandat 1747.494 kb on + strandat 1747.530 kb on + strandat 1747.530 kb on + strandat 1747.532 kb on - strandat 1747.538 kb on - strandat 1748.308 kb on + strandat 1748.321 kb on - strandat 1748.326 kb on + strandat 1748.706 kb on + strandat 1748.745 kb on + strandat 1748.757 kb on - strandat 1748.764 kb on + strandat 1748.806 kb on + strand, within CCNA_01628at 1748.817 kb on - strand, within CCNA_01628at 1748.909 kb on - strand, within CCNA_01628at 1749.042 kb on + strandat 1749.042 kb on + strandat 1749.062 kb on + strandat 1749.062 kb on + strandat 1749.077 kb on + strandat 1749.077 kb on + strandat 1749.085 kb on - strandat 1749.085 kb on - strandat 1749.085 kb on - strandat 1749.091 kb on + strandat 1749.146 kb on + strandat 1749.178 kb on + strandat 1749.186 kb on - strandat 1749.251 kb on + strand, within CCNA_01629at 1749.253 kb on + strand, within CCNA_01629at 1749.259 kb on + strand, within CCNA_01629at 1749.364 kb on - strand, within CCNA_01629at 1749.366 kb on + strand, within CCNA_01629at 1749.372 kb on + strand, within CCNA_01629at 1749.388 kb on + strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.551 kb on - strand, within CCNA_01629at 1749.582 kb on + strand, within CCNA_01629at 1749.591 kb on + strand, within CCNA_01629at 1749.624 kb on + strand, within CCNA_01629at 1749.636 kb on + strand, within CCNA_01629at 1749.710 kb on + strand, within CCNA_01629at 1749.710 kb on + strand, within CCNA_01629at 1749.712 kb on + strand, within CCNA_01629at 1749.720 kb on + strand, within CCNA_01629

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,747,353 + +0.6
1,747,361 - -2.5
1,747,361 - -0.4
1,747,384 - -0.9
1,747,390 + +0.3
1,747,390 + -1.1
1,747,440 + -2.2
1,747,442 - +0.1
1,747,442 - -0.3
1,747,478 + +1.9
1,747,486 - -2.0
1,747,488 + +0.8
1,747,494 + -0.4
1,747,530 + -0.9
1,747,530 + +1.9
1,747,532 - -2.0
1,747,538 - -0.7
1,748,308 + +1.1
1,748,321 - -0.5
1,748,326 + +0.1
1,748,706 + +0.9
1,748,745 + +0.5
1,748,757 - -2.2
1,748,764 + +3.0
1,748,806 + CCNA_01628 0.22 +0.1
1,748,817 - CCNA_01628 0.26 -0.9
1,748,909 - CCNA_01628 0.57 -1.9
1,749,042 + +2.0
1,749,042 + +1.6
1,749,062 + +1.8
1,749,062 + +1.7
1,749,077 + -0.6
1,749,077 + +1.1
1,749,085 - +2.0
1,749,085 - -1.8
1,749,085 - -1.2
1,749,091 + -0.2
1,749,146 + +0.9
1,749,178 + +1.1
1,749,186 - +0.4
1,749,251 + CCNA_01629 0.11 +1.0
1,749,253 + CCNA_01629 0.11 +0.8
1,749,259 + CCNA_01629 0.12 -0.1
1,749,364 - CCNA_01629 0.24 -1.7
1,749,366 + CCNA_01629 0.24 +3.2
1,749,372 + CCNA_01629 0.25 -0.2
1,749,388 + CCNA_01629 0.27 -0.2
1,749,543 + CCNA_01629 0.45 +0.5
1,749,551 - CCNA_01629 0.46 -0.7
1,749,582 + CCNA_01629 0.50 +1.0
1,749,591 + CCNA_01629 0.51 +0.7
1,749,624 + CCNA_01629 0.55 +0.3
1,749,636 + CCNA_01629 0.56 +0.8
1,749,710 + CCNA_01629 0.65 +0.1
1,749,710 + CCNA_01629 0.65 +0.4
1,749,712 + CCNA_01629 0.65 +0.6
1,749,720 + CCNA_01629 0.66 +0.8

Or see this region's nucleotide sequence