Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01612 and CCNA_01613 are separated by 49 nucleotides CCNA_01613 and CCNA_01614 overlap by 4 nucleotides CCNA_01614 and CCNA_01615 are separated by 4 nucleotides
CCNA_01612: CCNA_01612 - rod shape-determining protein MreB, at 1,733,317 to 1,734,360
_01612
CCNA_01613: CCNA_01613 - rod shape-determining protein MreC, at 1,734,410 to 1,735,450
_01613
CCNA_01614: CCNA_01614 - hypothetical protein, at 1,735,447 to 1,735,962
_01614
CCNA_01615: CCNA_01615 - cell elongation specific D,D-transpeptidase, at 1,735,967 to 1,737,985
_01615
Position (kb) 1734
1735
1736 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1734.354 kb on + strand at 1735.281 kb on + strand, within CCNA_01613 at 1735.432 kb on + strand at 1735.434 kb on - strand at 1735.441 kb on + strand at 1735.902 kb on + strand, within CCNA_01614 at 1735.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,734,354 + +2.8 1,734,354 + +2.0 1,734,354 + +5.2 1,734,354 + +2.4 1,734,354 + +0.7 1,734,354 + +2.2 1,734,354 + +2.6 1,734,354 + +3.6 1,735,281 + CCNA_01613 0.84 -1.3 1,735,432 + +0.8 1,735,434 - +1.4 1,735,441 + +1.0 1,735,902 + CCNA_01614 0.88 +0.5 1,735,953 + +5.1
Or see this region's nucleotide sequence