Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01403

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01399 and CCNA_01400 are separated by 26 nucleotidesCCNA_01400 and CCNA_01403 are separated by 480 nucleotidesCCNA_01403 and CCNA_01404 are separated by 6 nucleotides CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088 _01399 CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453 _01400 CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833 _01403 CCNA_01404: CCNA_01404 - glycyl-tRNA synthetase beta chain, at 1,521,840 to 1,523,918 _01404 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -2 -1 0 1at 1520.000 kb on + strandat 1520.020 kb on + strandat 1520.184 kb on - strand, within CCNA_01400at 1520.196 kb on + strand, within CCNA_01400at 1520.245 kb on + strand, within CCNA_01400at 1520.266 kb on + strand, within CCNA_01400at 1520.290 kb on + strand, within CCNA_01400at 1520.298 kb on - strand, within CCNA_01400at 1520.366 kb on + strand, within CCNA_01400at 1520.375 kb on - strand, within CCNA_01400at 1520.391 kb on + strand, within CCNA_01400at 1520.433 kb on - strandat 1520.433 kb on - strandat 1520.456 kb on + strandat 1520.482 kb on + strandat 1520.482 kb on + strandat 1520.629 kb on - strandat 1520.743 kb on - strandat 1520.744 kb on - strandat 1520.782 kb on - strandat 1520.782 kb on - strandat 1520.793 kb on + strandat 1520.814 kb on + strandat 1521.826 kb on - strandat 1521.826 kb on - strandat 1521.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,520,000 + -0.7
1,520,020 + -0.5
1,520,184 - CCNA_01400 0.20 -1.0
1,520,196 + CCNA_01400 0.24 -1.7
1,520,245 + CCNA_01400 0.38 +0.3
1,520,266 + CCNA_01400 0.45 -1.3
1,520,290 + CCNA_01400 0.52 -1.9
1,520,298 - CCNA_01400 0.54 -2.0
1,520,366 + CCNA_01400 0.74 -1.6
1,520,375 - CCNA_01400 0.77 -0.5
1,520,391 + CCNA_01400 0.81 -0.4
1,520,433 - -0.3
1,520,433 - -0.9
1,520,456 + -0.1
1,520,482 + +0.5
1,520,482 + -1.3
1,520,629 - -0.1
1,520,743 - -1.3
1,520,744 - -1.1
1,520,782 - -0.8
1,520,782 - -0.8
1,520,793 + -2.3
1,520,814 + +1.5
1,521,826 - -1.8
1,521,826 - -0.2
1,521,837 + +1.1

Or see this region's nucleotide sequence