Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01350

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01348 and CCNA_01349 are separated by 272 nucleotidesCCNA_01349 and CCNA_01350 are separated by 14 nucleotidesCCNA_01350 and CCNA_01351 are separated by 127 nucleotidesCCNA_01351 and CCNA_01352 are separated by 0 nucleotides CCNA_01348: CCNA_01348 - hypothetical protein, at 1,461,471 to 1,462,034 _01348 CCNA_01349: CCNA_01349 - transposase, at 1,462,307 to 1,462,717 _01349 CCNA_01350: CCNA_01350 - transposase DDE domain protein, at 1,462,732 to 1,463,100 _01350 CCNA_01351: CCNA_01351 - two-component response regulator protein, at 1,463,228 to 1,463,956 _01351 CCNA_01352: CCNA_01352 - two component sensor histidine kinase, at 1,463,957 to 1,465,588 _01352 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1461.732 kb on - strand, within CCNA_01348at 1461.734 kb on + strand, within CCNA_01348at 1461.737 kb on - strand, within CCNA_01348at 1461.737 kb on - strand, within CCNA_01348at 1461.737 kb on - strand, within CCNA_01348at 1461.744 kb on + strand, within CCNA_01348at 1461.779 kb on + strand, within CCNA_01348at 1461.801 kb on - strand, within CCNA_01348at 1461.806 kb on - strand, within CCNA_01348at 1461.816 kb on + strand, within CCNA_01348at 1461.839 kb on - strand, within CCNA_01348at 1461.839 kb on - strand, within CCNA_01348at 1461.956 kb on - strand, within CCNA_01348at 1461.961 kb on - strand, within CCNA_01348at 1461.961 kb on - strand, within CCNA_01348at 1461.997 kb on - strandat 1462.001 kb on + strandat 1462.007 kb on - strandat 1462.016 kb on + strandat 1462.016 kb on + strandat 1462.016 kb on + strandat 1462.016 kb on + strandat 1462.016 kb on + strandat 1462.024 kb on - strandat 1462.024 kb on - strandat 1462.024 kb on - strandat 1462.024 kb on - strandat 1462.024 kb on - strandat 1462.046 kb on - strandat 1462.048 kb on + strandat 1462.057 kb on + strandat 1462.061 kb on + strandat 1462.069 kb on - strandat 1462.069 kb on - strandat 1462.069 kb on - strandat 1462.069 kb on - strandat 1462.085 kb on - strandat 1462.085 kb on - strandat 1462.110 kb on - strandat 1462.115 kb on - strandat 1462.123 kb on - strandat 1462.146 kb on + strandat 1462.160 kb on + strandat 1462.231 kb on - strandat 1462.231 kb on - strandat 1462.241 kb on - strandat 1462.241 kb on - strandat 1462.256 kb on + strandat 1462.280 kb on - strandat 1463.159 kb on - strandat 1463.322 kb on + strand, within CCNA_01351at 1463.342 kb on + strand, within CCNA_01351at 1463.350 kb on - strand, within CCNA_01351at 1463.372 kb on + strand, within CCNA_01351at 1463.385 kb on + strand, within CCNA_01351at 1463.385 kb on + strand, within CCNA_01351at 1463.385 kb on + strand, within CCNA_01351at 1463.393 kb on - strand, within CCNA_01351at 1463.414 kb on + strand, within CCNA_01351at 1463.422 kb on - strand, within CCNA_01351at 1463.428 kb on - strand, within CCNA_01351at 1463.436 kb on - strand, within CCNA_01351at 1463.472 kb on + strand, within CCNA_01351at 1463.480 kb on - strand, within CCNA_01351at 1463.490 kb on - strand, within CCNA_01351at 1463.592 kb on + strand, within CCNA_01351at 1463.622 kb on - strand, within CCNA_01351at 1463.675 kb on + strand, within CCNA_01351at 1463.675 kb on + strand, within CCNA_01351at 1463.683 kb on - strand, within CCNA_01351at 1463.685 kb on - strand, within CCNA_01351at 1463.687 kb on + strand, within CCNA_01351at 1463.731 kb on + strand, within CCNA_01351at 1463.732 kb on - strand, within CCNA_01351at 1463.737 kb on - strand, within CCNA_01351at 1463.749 kb on + strand, within CCNA_01351at 1463.781 kb on - strand, within CCNA_01351at 1463.811 kb on - strand, within CCNA_01351at 1463.811 kb on - strand, within CCNA_01351at 1463.811 kb on - strand, within CCNA_01351at 1463.842 kb on + strand, within CCNA_01351at 1463.850 kb on - strand, within CCNA_01351at 1463.850 kb on - strand, within CCNA_01351at 1463.850 kb on - strand, within CCNA_01351at 1463.878 kb on + strand, within CCNA_01351at 1463.878 kb on + strand, within CCNA_01351at 1463.885 kb on - strandat 1463.996 kb on - strandat 1463.998 kb on + strandat 1464.006 kb on - strandat 1464.009 kb on + strandat 1464.016 kb on + strandat 1464.040 kb on + strandat 1464.040 kb on + strandat 1464.040 kb on + strandat 1464.048 kb on - strandat 1464.048 kb on - strandat 1464.061 kb on - strandat 1464.066 kb on + strandat 1464.078 kb on + strandat 1464.086 kb on - strandat 1464.086 kb on - strandat 1464.088 kb on + strandat 1464.088 kb on + strandat 1464.088 kb on + strandat 1464.088 kb on + strandat 1464.088 kb on + strandat 1464.088 kb on + strandat 1464.096 kb on - strandat 1464.096 kb on - strandat 1464.096 kb on - strandat 1464.096 kb on - strandat 1464.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,461,732 - CCNA_01348 0.46 -0.1
1,461,734 + CCNA_01348 0.47 +0.8
1,461,737 - CCNA_01348 0.47 +2.0
1,461,737 - CCNA_01348 0.47 -1.7
1,461,737 - CCNA_01348 0.47 -0.7
1,461,744 + CCNA_01348 0.48 -0.5
1,461,779 + CCNA_01348 0.55 -1.2
1,461,801 - CCNA_01348 0.59 +0.4
1,461,806 - CCNA_01348 0.59 -0.3
1,461,816 + CCNA_01348 0.61 -1.3
1,461,839 - CCNA_01348 0.65 -0.5
1,461,839 - CCNA_01348 0.65 -1.1
1,461,956 - CCNA_01348 0.86 -1.1
1,461,961 - CCNA_01348 0.87 +2.2
1,461,961 - CCNA_01348 0.87 -0.0
1,461,997 - +2.1
1,462,001 + -0.8
1,462,007 - -2.0
1,462,016 + -0.2
1,462,016 + -0.1
1,462,016 + -0.1
1,462,016 + +0.8
1,462,016 + +0.0
1,462,024 - -0.9
1,462,024 - -0.8
1,462,024 - -0.1
1,462,024 - +0.9
1,462,024 - -0.3
1,462,046 - -2.3
1,462,048 + +0.5
1,462,057 + +0.6
1,462,061 + +1.4
1,462,069 - -0.0
1,462,069 - +1.1
1,462,069 - -0.2
1,462,069 - -1.3
1,462,085 - -1.0
1,462,085 - +0.3
1,462,110 - +0.1
1,462,115 - +0.1
1,462,123 - +0.7
1,462,146 + -0.9
1,462,160 + -0.6
1,462,231 - +0.1
1,462,231 - +0.2
1,462,241 - -0.4
1,462,241 - -0.9
1,462,256 + +1.7
1,462,280 - +0.6
1,463,159 - +1.3
1,463,322 + CCNA_01351 0.13 -0.9
1,463,342 + CCNA_01351 0.16 +0.2
1,463,350 - CCNA_01351 0.17 +0.6
1,463,372 + CCNA_01351 0.20 -2.2
1,463,385 + CCNA_01351 0.22 +0.2
1,463,385 + CCNA_01351 0.22 -0.1
1,463,385 + CCNA_01351 0.22 +0.6
1,463,393 - CCNA_01351 0.23 +0.7
1,463,414 + CCNA_01351 0.26 +0.6
1,463,422 - CCNA_01351 0.27 +1.1
1,463,428 - CCNA_01351 0.27 +1.2
1,463,436 - CCNA_01351 0.29 -0.9
1,463,472 + CCNA_01351 0.33 -0.3
1,463,480 - CCNA_01351 0.35 +1.5
1,463,490 - CCNA_01351 0.36 +1.5
1,463,592 + CCNA_01351 0.50 +0.6
1,463,622 - CCNA_01351 0.54 +1.1
1,463,675 + CCNA_01351 0.61 -0.8
1,463,675 + CCNA_01351 0.61 -2.2
1,463,683 - CCNA_01351 0.62 -0.7
1,463,685 - CCNA_01351 0.63 +1.2
1,463,687 + CCNA_01351 0.63 -1.3
1,463,731 + CCNA_01351 0.69 -1.1
1,463,732 - CCNA_01351 0.69 +1.4
1,463,737 - CCNA_01351 0.70 +1.2
1,463,749 + CCNA_01351 0.71 -1.9
1,463,781 - CCNA_01351 0.76 +0.8
1,463,811 - CCNA_01351 0.80 +1.2
1,463,811 - CCNA_01351 0.80 +1.1
1,463,811 - CCNA_01351 0.80 -0.2
1,463,842 + CCNA_01351 0.84 -2.6
1,463,850 - CCNA_01351 0.85 +0.9
1,463,850 - CCNA_01351 0.85 +0.9
1,463,850 - CCNA_01351 0.85 +0.9
1,463,878 + CCNA_01351 0.89 +1.7
1,463,878 + CCNA_01351 0.89 -1.9
1,463,885 - +0.4
1,463,996 - +1.7
1,463,998 + +1.0
1,464,006 - +1.3
1,464,009 + -1.0
1,464,016 + -2.9
1,464,040 + -1.1
1,464,040 + +1.4
1,464,040 + +0.8
1,464,048 - +0.4
1,464,048 - +3.3
1,464,061 - +0.5
1,464,066 + -1.4
1,464,078 + -0.6
1,464,086 - +1.9
1,464,086 - +0.8
1,464,088 + -0.5
1,464,088 + +0.4
1,464,088 + -0.2
1,464,088 + +0.2
1,464,088 + +0.8
1,464,088 + +1.1
1,464,096 - +1.0
1,464,096 - +0.7
1,464,096 - +2.7
1,464,096 - +0.9
1,464,097 - +2.0

Or see this region's nucleotide sequence