Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01348 and CCNA_01349 are separated by 272 nucleotides CCNA_01349 and CCNA_01350 are separated by 14 nucleotides CCNA_01350 and CCNA_01351 are separated by 127 nucleotides CCNA_01351 and CCNA_01352 are separated by 0 nucleotides
CCNA_01348: CCNA_01348 - hypothetical protein, at 1,461,471 to 1,462,034
_01348
CCNA_01349: CCNA_01349 - transposase, at 1,462,307 to 1,462,717
_01349
CCNA_01350: CCNA_01350 - transposase DDE domain protein, at 1,462,732 to 1,463,100
_01350
CCNA_01351: CCNA_01351 - two-component response regulator protein, at 1,463,228 to 1,463,956
_01351
CCNA_01352: CCNA_01352 - two component sensor histidine kinase, at 1,463,957 to 1,465,588
_01352
Position (kb)
1462
1463
1464 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1461.732 kb on - strand, within CCNA_01348 at 1461.734 kb on + strand, within CCNA_01348 at 1461.737 kb on - strand, within CCNA_01348 at 1461.737 kb on - strand, within CCNA_01348 at 1461.737 kb on - strand, within CCNA_01348 at 1461.744 kb on + strand, within CCNA_01348 at 1461.779 kb on + strand, within CCNA_01348 at 1461.801 kb on - strand, within CCNA_01348 at 1461.806 kb on - strand, within CCNA_01348 at 1461.816 kb on + strand, within CCNA_01348 at 1461.839 kb on - strand, within CCNA_01348 at 1461.839 kb on - strand, within CCNA_01348 at 1461.956 kb on - strand, within CCNA_01348 at 1461.961 kb on - strand, within CCNA_01348 at 1461.961 kb on - strand, within CCNA_01348 at 1461.997 kb on - strand at 1462.001 kb on + strand at 1462.007 kb on - strand at 1462.016 kb on + strand at 1462.016 kb on + strand at 1462.016 kb on + strand at 1462.016 kb on + strand at 1462.016 kb on + strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.024 kb on - strand at 1462.046 kb on - strand at 1462.048 kb on + strand at 1462.057 kb on + strand at 1462.061 kb on + strand at 1462.069 kb on - strand at 1462.069 kb on - strand at 1462.069 kb on - strand at 1462.069 kb on - strand at 1462.085 kb on - strand at 1462.085 kb on - strand at 1462.110 kb on - strand at 1462.115 kb on - strand at 1462.123 kb on - strand at 1462.146 kb on + strand at 1462.160 kb on + strand at 1462.231 kb on - strand at 1462.231 kb on - strand at 1462.241 kb on - strand at 1462.241 kb on - strand at 1462.256 kb on + strand at 1462.280 kb on - strand at 1463.159 kb on - strand at 1463.322 kb on + strand, within CCNA_01351 at 1463.342 kb on + strand, within CCNA_01351 at 1463.350 kb on - strand, within CCNA_01351 at 1463.372 kb on + strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.385 kb on + strand, within CCNA_01351 at 1463.393 kb on - strand, within CCNA_01351 at 1463.414 kb on + strand, within CCNA_01351 at 1463.422 kb on - strand, within CCNA_01351 at 1463.428 kb on - strand, within CCNA_01351 at 1463.436 kb on - strand, within CCNA_01351 at 1463.472 kb on + strand, within CCNA_01351 at 1463.480 kb on - strand, within CCNA_01351 at 1463.490 kb on - strand, within CCNA_01351 at 1463.592 kb on + strand, within CCNA_01351 at 1463.622 kb on - strand, within CCNA_01351 at 1463.675 kb on + strand, within CCNA_01351 at 1463.675 kb on + strand, within CCNA_01351 at 1463.683 kb on - strand, within CCNA_01351 at 1463.685 kb on - strand, within CCNA_01351 at 1463.687 kb on + strand, within CCNA_01351 at 1463.731 kb on + strand, within CCNA_01351 at 1463.732 kb on - strand, within CCNA_01351 at 1463.737 kb on - strand, within CCNA_01351 at 1463.749 kb on + strand, within CCNA_01351 at 1463.781 kb on - strand, within CCNA_01351 at 1463.811 kb on - strand, within CCNA_01351 at 1463.811 kb on - strand, within CCNA_01351 at 1463.811 kb on - strand, within CCNA_01351 at 1463.842 kb on + strand, within CCNA_01351 at 1463.850 kb on - strand, within CCNA_01351 at 1463.850 kb on - strand, within CCNA_01351 at 1463.850 kb on - strand, within CCNA_01351 at 1463.878 kb on + strand, within CCNA_01351 at 1463.878 kb on + strand, within CCNA_01351 at 1463.885 kb on - strand at 1463.996 kb on - strand at 1463.998 kb on + strand at 1464.006 kb on - strand at 1464.009 kb on + strand at 1464.016 kb on + strand at 1464.040 kb on + strand at 1464.040 kb on + strand at 1464.040 kb on + strand at 1464.048 kb on - strand at 1464.048 kb on - strand at 1464.061 kb on - strand at 1464.066 kb on + strand at 1464.078 kb on + strand at 1464.086 kb on - strand at 1464.086 kb on - strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.088 kb on + strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.096 kb on - strand at 1464.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,461,732 - CCNA_01348 0.46 -0.1 1,461,734 + CCNA_01348 0.47 +0.8 1,461,737 - CCNA_01348 0.47 +2.0 1,461,737 - CCNA_01348 0.47 -1.7 1,461,737 - CCNA_01348 0.47 -0.7 1,461,744 + CCNA_01348 0.48 -0.5 1,461,779 + CCNA_01348 0.55 -1.2 1,461,801 - CCNA_01348 0.59 +0.4 1,461,806 - CCNA_01348 0.59 -0.3 1,461,816 + CCNA_01348 0.61 -1.3 1,461,839 - CCNA_01348 0.65 -0.5 1,461,839 - CCNA_01348 0.65 -1.1 1,461,956 - CCNA_01348 0.86 -1.1 1,461,961 - CCNA_01348 0.87 +2.2 1,461,961 - CCNA_01348 0.87 -0.0 1,461,997 - +2.1 1,462,001 + -0.8 1,462,007 - -2.0 1,462,016 + -0.2 1,462,016 + -0.1 1,462,016 + -0.1 1,462,016 + +0.8 1,462,016 + +0.0 1,462,024 - -0.9 1,462,024 - -0.8 1,462,024 - -0.1 1,462,024 - +0.9 1,462,024 - -0.3 1,462,046 - -2.3 1,462,048 + +0.5 1,462,057 + +0.6 1,462,061 + +1.4 1,462,069 - -0.0 1,462,069 - +1.1 1,462,069 - -0.2 1,462,069 - -1.3 1,462,085 - -1.0 1,462,085 - +0.3 1,462,110 - +0.1 1,462,115 - +0.1 1,462,123 - +0.7 1,462,146 + -0.9 1,462,160 + -0.6 1,462,231 - +0.1 1,462,231 - +0.2 1,462,241 - -0.4 1,462,241 - -0.9 1,462,256 + +1.7 1,462,280 - +0.6 1,463,159 - +1.3 1,463,322 + CCNA_01351 0.13 -0.9 1,463,342 + CCNA_01351 0.16 +0.2 1,463,350 - CCNA_01351 0.17 +0.6 1,463,372 + CCNA_01351 0.20 -2.2 1,463,385 + CCNA_01351 0.22 +0.2 1,463,385 + CCNA_01351 0.22 -0.1 1,463,385 + CCNA_01351 0.22 +0.6 1,463,393 - CCNA_01351 0.23 +0.7 1,463,414 + CCNA_01351 0.26 +0.6 1,463,422 - CCNA_01351 0.27 +1.1 1,463,428 - CCNA_01351 0.27 +1.2 1,463,436 - CCNA_01351 0.29 -0.9 1,463,472 + CCNA_01351 0.33 -0.3 1,463,480 - CCNA_01351 0.35 +1.5 1,463,490 - CCNA_01351 0.36 +1.5 1,463,592 + CCNA_01351 0.50 +0.6 1,463,622 - CCNA_01351 0.54 +1.1 1,463,675 + CCNA_01351 0.61 -0.8 1,463,675 + CCNA_01351 0.61 -2.2 1,463,683 - CCNA_01351 0.62 -0.7 1,463,685 - CCNA_01351 0.63 +1.2 1,463,687 + CCNA_01351 0.63 -1.3 1,463,731 + CCNA_01351 0.69 -1.1 1,463,732 - CCNA_01351 0.69 +1.4 1,463,737 - CCNA_01351 0.70 +1.2 1,463,749 + CCNA_01351 0.71 -1.9 1,463,781 - CCNA_01351 0.76 +0.8 1,463,811 - CCNA_01351 0.80 +1.2 1,463,811 - CCNA_01351 0.80 +1.1 1,463,811 - CCNA_01351 0.80 -0.2 1,463,842 + CCNA_01351 0.84 -2.6 1,463,850 - CCNA_01351 0.85 +0.9 1,463,850 - CCNA_01351 0.85 +0.9 1,463,850 - CCNA_01351 0.85 +0.9 1,463,878 + CCNA_01351 0.89 +1.7 1,463,878 + CCNA_01351 0.89 -1.9 1,463,885 - +0.4 1,463,996 - +1.7 1,463,998 + +1.0 1,464,006 - +1.3 1,464,009 + -1.0 1,464,016 + -2.9 1,464,040 + -1.1 1,464,040 + +1.4 1,464,040 + +0.8 1,464,048 - +0.4 1,464,048 - +3.3 1,464,061 - +0.5 1,464,066 + -1.4 1,464,078 + -0.6 1,464,086 - +1.9 1,464,086 - +0.8 1,464,088 + -0.5 1,464,088 + +0.4 1,464,088 + -0.2 1,464,088 + +0.2 1,464,088 + +0.8 1,464,088 + +1.1 1,464,096 - +1.0 1,464,096 - +0.7 1,464,096 - +2.7 1,464,096 - +0.9 1,464,097 - +2.0
Or see this region's nucleotide sequence