Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01212 and CCNA_01213 overlap by 1 nucleotides CCNA_01213 and CCNA_01214 overlap by 4 nucleotides
CCNA_01212: CCNA_01212 - dATP pyrophosphohydrolase, at 1,338,566 to 1,339,720
_01212
CCNA_01213: CCNA_01213 - YjgP/YjgQ family membrane permease, at 1,339,720 to 1,340,781
_01213
CCNA_01214: CCNA_01214 - YjgP/YjgQ family membrane permease, at 1,340,778 to 1,341,998
_01214
Position (kb)
1339
1340
1341 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1338.752 kb on + strand, within CCNA_01212 at 1338.804 kb on + strand, within CCNA_01212 at 1338.805 kb on - strand, within CCNA_01212 at 1338.810 kb on + strand, within CCNA_01212 at 1338.812 kb on - strand, within CCNA_01212 at 1338.901 kb on + strand, within CCNA_01212 at 1339.017 kb on + strand, within CCNA_01212 at 1339.054 kb on - strand, within CCNA_01212 at 1339.058 kb on + strand, within CCNA_01212 at 1339.058 kb on + strand, within CCNA_01212 at 1339.058 kb on + strand, within CCNA_01212 at 1339.059 kb on + strand, within CCNA_01212 at 1339.066 kb on - strand, within CCNA_01212 at 1339.066 kb on - strand, within CCNA_01212 at 1339.105 kb on - strand, within CCNA_01212 at 1339.110 kb on + strand, within CCNA_01212 at 1339.116 kb on - strand, within CCNA_01212 at 1339.118 kb on - strand, within CCNA_01212 at 1339.190 kb on - strand, within CCNA_01212 at 1339.198 kb on - strand, within CCNA_01212 at 1339.198 kb on - strand, within CCNA_01212 at 1339.198 kb on - strand, within CCNA_01212 at 1339.198 kb on - strand, within CCNA_01212 at 1339.216 kb on - strand, within CCNA_01212 at 1339.232 kb on + strand, within CCNA_01212 at 1339.241 kb on - strand, within CCNA_01212 at 1339.241 kb on - strand, within CCNA_01212 at 1339.333 kb on + strand, within CCNA_01212 at 1339.353 kb on - strand, within CCNA_01212 at 1339.364 kb on + strand, within CCNA_01212 at 1339.394 kb on - strand, within CCNA_01212 at 1339.394 kb on - strand, within CCNA_01212 at 1339.409 kb on - strand, within CCNA_01212 at 1339.457 kb on - strand, within CCNA_01212 at 1339.490 kb on - strand, within CCNA_01212 at 1339.506 kb on - strand, within CCNA_01212 at 1339.506 kb on - strand, within CCNA_01212 at 1339.526 kb on - strand, within CCNA_01212 at 1339.534 kb on - strand, within CCNA_01212 at 1339.644 kb on + strand at 1339.671 kb on + strand at 1339.694 kb on - strand at 1339.717 kb on - strand at 1340.685 kb on - strand at 1340.763 kb on - strand at 1340.768 kb on - strand at 1340.770 kb on - strand at 1340.836 kb on + strand at 1340.842 kb on - strand at 1340.844 kb on - strand at 1340.890 kb on - strand at 1341.028 kb on - strand, within CCNA_01214 at 1341.062 kb on + strand, within CCNA_01214 at 1341.296 kb on - strand, within CCNA_01214 at 1341.470 kb on - strand, within CCNA_01214
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 1,338,752 + CCNA_01212 0.16 -1.6 1,338,804 + CCNA_01212 0.21 -0.6 1,338,805 - CCNA_01212 0.21 -2.0 1,338,810 + CCNA_01212 0.21 -0.7 1,338,812 - CCNA_01212 0.21 -0.6 1,338,901 + CCNA_01212 0.29 -1.5 1,339,017 + CCNA_01212 0.39 -0.9 1,339,054 - CCNA_01212 0.42 +0.0 1,339,058 + CCNA_01212 0.43 -2.4 1,339,058 + CCNA_01212 0.43 -3.7 1,339,058 + CCNA_01212 0.43 -2.0 1,339,059 + CCNA_01212 0.43 -1.1 1,339,066 - CCNA_01212 0.43 -0.3 1,339,066 - CCNA_01212 0.43 -1.8 1,339,105 - CCNA_01212 0.47 +1.0 1,339,110 + CCNA_01212 0.47 -1.3 1,339,116 - CCNA_01212 0.48 +1.0 1,339,118 - CCNA_01212 0.48 -0.5 1,339,190 - CCNA_01212 0.54 -0.4 1,339,198 - CCNA_01212 0.55 -1.0 1,339,198 - CCNA_01212 0.55 -0.4 1,339,198 - CCNA_01212 0.55 +1.3 1,339,198 - CCNA_01212 0.55 +0.7 1,339,216 - CCNA_01212 0.56 -0.4 1,339,232 + CCNA_01212 0.58 +0.1 1,339,241 - CCNA_01212 0.58 -1.7 1,339,241 - CCNA_01212 0.58 -0.7 1,339,333 + CCNA_01212 0.66 +1.1 1,339,353 - CCNA_01212 0.68 +0.4 1,339,364 + CCNA_01212 0.69 -2.8 1,339,394 - CCNA_01212 0.72 -0.0 1,339,394 - CCNA_01212 0.72 -0.3 1,339,409 - CCNA_01212 0.73 -0.3 1,339,457 - CCNA_01212 0.77 +1.3 1,339,490 - CCNA_01212 0.80 +0.3 1,339,506 - CCNA_01212 0.81 +0.6 1,339,506 - CCNA_01212 0.81 -0.7 1,339,526 - CCNA_01212 0.83 -1.0 1,339,534 - CCNA_01212 0.84 -0.8 1,339,644 + -0.9 1,339,671 + -1.0 1,339,694 - +0.3 1,339,717 - +0.2 1,340,685 - -1.6 1,340,763 - -0.6 1,340,768 - +0.2 1,340,770 - +0.1 1,340,836 + -0.9 1,340,842 - +1.8 1,340,844 - +1.0 1,340,890 - -0.5 1,341,028 - CCNA_01214 0.20 -0.6 1,341,062 + CCNA_01214 0.23 -0.0 1,341,296 - CCNA_01214 0.42 -1.0 1,341,470 - CCNA_01214 0.57 -2.4
Or see this region's nucleotide sequence