Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01213

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01212 and CCNA_01213 overlap by 1 nucleotidesCCNA_01213 and CCNA_01214 overlap by 4 nucleotides CCNA_01212: CCNA_01212 - dATP pyrophosphohydrolase, at 1,338,566 to 1,339,720 _01212 CCNA_01213: CCNA_01213 - YjgP/YjgQ family membrane permease, at 1,339,720 to 1,340,781 _01213 CCNA_01214: CCNA_01214 - YjgP/YjgQ family membrane permease, at 1,340,778 to 1,341,998 _01214 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1338.752 kb on + strand, within CCNA_01212at 1338.804 kb on + strand, within CCNA_01212at 1338.805 kb on - strand, within CCNA_01212at 1338.810 kb on + strand, within CCNA_01212at 1338.812 kb on - strand, within CCNA_01212at 1338.901 kb on + strand, within CCNA_01212at 1339.017 kb on + strand, within CCNA_01212at 1339.054 kb on - strand, within CCNA_01212at 1339.058 kb on + strand, within CCNA_01212at 1339.058 kb on + strand, within CCNA_01212at 1339.058 kb on + strand, within CCNA_01212at 1339.059 kb on + strand, within CCNA_01212at 1339.066 kb on - strand, within CCNA_01212at 1339.066 kb on - strand, within CCNA_01212at 1339.105 kb on - strand, within CCNA_01212at 1339.110 kb on + strand, within CCNA_01212at 1339.116 kb on - strand, within CCNA_01212at 1339.118 kb on - strand, within CCNA_01212at 1339.190 kb on - strand, within CCNA_01212at 1339.198 kb on - strand, within CCNA_01212at 1339.198 kb on - strand, within CCNA_01212at 1339.198 kb on - strand, within CCNA_01212at 1339.198 kb on - strand, within CCNA_01212at 1339.216 kb on - strand, within CCNA_01212at 1339.232 kb on + strand, within CCNA_01212at 1339.241 kb on - strand, within CCNA_01212at 1339.241 kb on - strand, within CCNA_01212at 1339.333 kb on + strand, within CCNA_01212at 1339.353 kb on - strand, within CCNA_01212at 1339.364 kb on + strand, within CCNA_01212at 1339.394 kb on - strand, within CCNA_01212at 1339.394 kb on - strand, within CCNA_01212at 1339.409 kb on - strand, within CCNA_01212at 1339.457 kb on - strand, within CCNA_01212at 1339.490 kb on - strand, within CCNA_01212at 1339.506 kb on - strand, within CCNA_01212at 1339.506 kb on - strand, within CCNA_01212at 1339.526 kb on - strand, within CCNA_01212at 1339.534 kb on - strand, within CCNA_01212at 1339.644 kb on + strandat 1339.671 kb on + strandat 1339.694 kb on - strandat 1339.717 kb on - strandat 1340.685 kb on - strandat 1340.763 kb on - strandat 1340.768 kb on - strandat 1340.770 kb on - strandat 1340.836 kb on + strandat 1340.842 kb on - strandat 1340.844 kb on - strandat 1340.890 kb on - strandat 1341.028 kb on - strand, within CCNA_01214at 1341.062 kb on + strand, within CCNA_01214at 1341.296 kb on - strand, within CCNA_01214at 1341.470 kb on - strand, within CCNA_01214

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,338,752 + CCNA_01212 0.16 -1.6
1,338,804 + CCNA_01212 0.21 -0.6
1,338,805 - CCNA_01212 0.21 -2.0
1,338,810 + CCNA_01212 0.21 -0.7
1,338,812 - CCNA_01212 0.21 -0.6
1,338,901 + CCNA_01212 0.29 -1.5
1,339,017 + CCNA_01212 0.39 -0.9
1,339,054 - CCNA_01212 0.42 +0.0
1,339,058 + CCNA_01212 0.43 -2.4
1,339,058 + CCNA_01212 0.43 -3.7
1,339,058 + CCNA_01212 0.43 -2.0
1,339,059 + CCNA_01212 0.43 -1.1
1,339,066 - CCNA_01212 0.43 -0.3
1,339,066 - CCNA_01212 0.43 -1.8
1,339,105 - CCNA_01212 0.47 +1.0
1,339,110 + CCNA_01212 0.47 -1.3
1,339,116 - CCNA_01212 0.48 +1.0
1,339,118 - CCNA_01212 0.48 -0.5
1,339,190 - CCNA_01212 0.54 -0.4
1,339,198 - CCNA_01212 0.55 -1.0
1,339,198 - CCNA_01212 0.55 -0.4
1,339,198 - CCNA_01212 0.55 +1.3
1,339,198 - CCNA_01212 0.55 +0.7
1,339,216 - CCNA_01212 0.56 -0.4
1,339,232 + CCNA_01212 0.58 +0.1
1,339,241 - CCNA_01212 0.58 -1.7
1,339,241 - CCNA_01212 0.58 -0.7
1,339,333 + CCNA_01212 0.66 +1.1
1,339,353 - CCNA_01212 0.68 +0.4
1,339,364 + CCNA_01212 0.69 -2.8
1,339,394 - CCNA_01212 0.72 -0.0
1,339,394 - CCNA_01212 0.72 -0.3
1,339,409 - CCNA_01212 0.73 -0.3
1,339,457 - CCNA_01212 0.77 +1.3
1,339,490 - CCNA_01212 0.80 +0.3
1,339,506 - CCNA_01212 0.81 +0.6
1,339,506 - CCNA_01212 0.81 -0.7
1,339,526 - CCNA_01212 0.83 -1.0
1,339,534 - CCNA_01212 0.84 -0.8
1,339,644 + -0.9
1,339,671 + -1.0
1,339,694 - +0.3
1,339,717 - +0.2
1,340,685 - -1.6
1,340,763 - -0.6
1,340,768 - +0.2
1,340,770 - +0.1
1,340,836 + -0.9
1,340,842 - +1.8
1,340,844 - +1.0
1,340,890 - -0.5
1,341,028 - CCNA_01214 0.20 -0.6
1,341,062 + CCNA_01214 0.23 -0.0
1,341,296 - CCNA_01214 0.42 -1.0
1,341,470 - CCNA_01214 0.57 -2.4

Or see this region's nucleotide sequence