Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01114

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01112 and CCNA_01113 are separated by 8 nucleotidesCCNA_01113 and CCNA_01114 overlap by 8 nucleotidesCCNA_01114 and CCNA_01115 are separated by 42 nucleotides CCNA_01112: CCNA_01112 - hypothetical protein, at 1,217,396 to 1,218,130 _01112 CCNA_01113: CCNA_01113 - rhodanese-related sulfurtransferase, at 1,218,139 to 1,219,086 _01113 CCNA_01114: CCNA_01114 - cysteine desulfurase subunit SufE, at 1,219,079 to 1,219,504 _01114 CCNA_01115: CCNA_01115 - two component sensor histidine kinase, at 1,219,547 to 1,220,338 _01115 Position (kb) 1219 1220Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1218.186 kb on + strandat 1218.196 kb on + strandat 1218.204 kb on - strandat 1218.216 kb on - strandat 1218.224 kb on - strandat 1218.242 kb on + strand, within CCNA_01113at 1218.252 kb on + strand, within CCNA_01113at 1218.252 kb on + strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.260 kb on - strand, within CCNA_01113at 1218.279 kb on + strand, within CCNA_01113at 1218.279 kb on - strand, within CCNA_01113at 1218.284 kb on + strandat 1218.292 kb on - strand, within CCNA_01113at 1218.299 kb on + strand, within CCNA_01113at 1218.306 kb on - strand, within CCNA_01113at 1218.306 kb on - strand, within CCNA_01113at 1218.340 kb on - strand, within CCNA_01113at 1218.342 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.353 kb on + strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.361 kb on - strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.363 kb on + strand, within CCNA_01113at 1218.371 kb on - strand, within CCNA_01113at 1218.371 kb on - strand, within CCNA_01113at 1218.371 kb on - strand, within CCNA_01113at 1218.395 kb on - strand, within CCNA_01113at 1218.415 kb on - strand, within CCNA_01113at 1218.419 kb on + strand, within CCNA_01113at 1218.427 kb on - strand, within CCNA_01113at 1218.427 kb on - strand, within CCNA_01113at 1218.438 kb on + strand, within CCNA_01113at 1218.438 kb on + strand, within CCNA_01113at 1218.438 kb on + strand, within CCNA_01113at 1218.443 kb on + strand, within CCNA_01113at 1218.446 kb on - strand, within CCNA_01113at 1218.446 kb on - strand, within CCNA_01113at 1218.446 kb on - strand, within CCNA_01113at 1218.448 kb on + strand, within CCNA_01113at 1218.448 kb on + strand, within CCNA_01113at 1218.448 kb on + strand, within CCNA_01113at 1218.448 kb on + strand, within CCNA_01113at 1218.448 kb on + strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.456 kb on - strand, within CCNA_01113at 1218.488 kb on + strand, within CCNA_01113at 1218.488 kb on - strand, within CCNA_01113at 1218.494 kb on + strand, within CCNA_01113at 1218.502 kb on - strand, within CCNA_01113at 1218.502 kb on - strand, within CCNA_01113at 1218.502 kb on - strand, within CCNA_01113at 1218.502 kb on - strand, within CCNA_01113at 1218.541 kb on + strand, within CCNA_01113at 1218.544 kb on - strand, within CCNA_01113at 1218.572 kb on - strand, within CCNA_01113at 1218.574 kb on - strand, within CCNA_01113at 1218.582 kb on - strand, within CCNA_01113at 1218.664 kb on - strand, within CCNA_01113at 1218.672 kb on - strand, within CCNA_01113at 1218.724 kb on + strand, within CCNA_01113at 1218.732 kb on - strand, within CCNA_01113at 1218.732 kb on - strand, within CCNA_01113at 1218.732 kb on - strand, within CCNA_01113at 1218.760 kb on - strand, within CCNA_01113at 1218.765 kb on - strandat 1218.789 kb on + strand, within CCNA_01113at 1218.789 kb on + strand, within CCNA_01113at 1218.797 kb on - strand, within CCNA_01113at 1218.803 kb on - strand, within CCNA_01113at 1218.849 kb on + strand, within CCNA_01113at 1218.851 kb on + strand, within CCNA_01113at 1218.868 kb on - strand, within CCNA_01113at 1218.876 kb on - strand, within CCNA_01113at 1218.904 kb on + strand, within CCNA_01113at 1218.904 kb on + strand, within CCNA_01113at 1218.912 kb on - strand, within CCNA_01113at 1219.008 kb on - strandat 1219.008 kb on - strandat 1219.026 kb on - strandat 1219.037 kb on + strandat 1219.052 kb on + strandat 1219.052 kb on + strandat 1219.060 kb on - strandat 1219.499 kb on + strandat 1219.518 kb on - strandat 1219.535 kb on + strandat 1219.543 kb on - strandat 1219.543 kb on - strandat 1219.554 kb on + strandat 1219.562 kb on - strandat 1219.596 kb on + strandat 1219.599 kb on - strandat 1219.601 kb on - strandat 1219.602 kb on + strandat 1219.610 kb on - strandat 1219.659 kb on - strand, within CCNA_01115at 1219.692 kb on - strand, within CCNA_01115at 1219.694 kb on + strand, within CCNA_01115at 1219.715 kb on - strand, within CCNA_01115at 1219.751 kb on - strand, within CCNA_01115at 1219.751 kb on - strand, within CCNA_01115at 1219.775 kb on - strand, within CCNA_01115at 1219.812 kb on - strand, within CCNA_01115at 1219.833 kb on + strand, within CCNA_01115at 1219.834 kb on - strand, within CCNA_01115at 1219.856 kb on - strand, within CCNA_01115at 1219.861 kb on - strand, within CCNA_01115at 1219.862 kb on + strand, within CCNA_01115at 1219.862 kb on + strand, within CCNA_01115at 1219.870 kb on - strand, within CCNA_01115at 1219.870 kb on - strand, within CCNA_01115at 1219.890 kb on + strand, within CCNA_01115at 1219.890 kb on + strand, within CCNA_01115at 1220.002 kb on - strand, within CCNA_01115at 1220.033 kb on - strand, within CCNA_01115at 1220.060 kb on - strand, within CCNA_01115at 1220.061 kb on + strand, within CCNA_01115at 1220.061 kb on + strand, within CCNA_01115at 1220.092 kb on - strand, within CCNA_01115at 1220.102 kb on - strand, within CCNA_01115at 1220.113 kb on + strand, within CCNA_01115at 1220.113 kb on + strand, within CCNA_01115at 1220.123 kb on + strand, within CCNA_01115at 1220.123 kb on + strand, within CCNA_01115at 1220.130 kb on + strand, within CCNA_01115at 1220.130 kb on + strand, within CCNA_01115at 1220.131 kb on - strand, within CCNA_01115at 1220.138 kb on - strand, within CCNA_01115at 1220.138 kb on - strand, within CCNA_01115at 1220.177 kb on + strand, within CCNA_01115at 1220.177 kb on + strand, within CCNA_01115at 1220.177 kb on + strand, within CCNA_01115at 1220.177 kb on + strand, within CCNA_01115at 1220.185 kb on - strand, within CCNA_01115at 1220.185 kb on - strand, within CCNA_01115at 1220.185 kb on - strand, within CCNA_01115at 1220.185 kb on - strand, within CCNA_01115at 1220.194 kb on - strand, within CCNA_01115at 1220.194 kb on - strand, within CCNA_01115at 1220.194 kb on - strand, within CCNA_01115at 1220.212 kb on + strand, within CCNA_01115at 1220.215 kb on + strand, within CCNA_01115at 1220.252 kb on - strand, within CCNA_01115at 1220.266 kb on - strandat 1220.298 kb on + strandat 1220.303 kb on + strandat 1220.303 kb on + strandat 1220.311 kb on - strandat 1220.311 kb on - strandat 1220.311 kb on - strandat 1220.315 kb on + strandat 1220.334 kb on + strandat 1220.342 kb on - strandat 1220.350 kb on + strandat 1220.352 kb on + strandat 1220.352 kb on + strandat 1220.387 kb on + strandat 1220.457 kb on + strandat 1220.457 kb on + strandat 1220.463 kb on + strandat 1220.465 kb on - strandat 1220.467 kb on - strandat 1220.467 kb on - strandat 1220.480 kb on + strandat 1220.480 kb on + strandat 1220.488 kb on - strandat 1220.496 kb on + strandat 1220.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,218,186 + +0.3
1,218,196 + -0.5
1,218,204 - +1.4
1,218,216 - -0.1
1,218,224 - +0.3
1,218,242 + CCNA_01113 0.11 -0.1
1,218,252 + CCNA_01113 0.12 +1.0
1,218,252 + CCNA_01113 0.12 -0.5
1,218,260 - CCNA_01113 0.13 +0.5
1,218,260 - CCNA_01113 0.13 +1.1
1,218,260 - CCNA_01113 0.13 +2.1
1,218,260 - CCNA_01113 0.13 +0.4
1,218,260 - CCNA_01113 0.13 +0.4
1,218,260 - CCNA_01113 0.13 +1.0
1,218,260 - CCNA_01113 0.13 +1.5
1,218,260 - CCNA_01113 0.13 +1.5
1,218,260 - CCNA_01113 0.13 +0.1
1,218,260 - CCNA_01113 0.13 +0.3
1,218,260 - CCNA_01113 0.13 +1.9
1,218,279 + CCNA_01113 0.15 -1.0
1,218,279 - CCNA_01113 0.15 +2.0
1,218,284 + +3.5
1,218,292 - CCNA_01113 0.16 +1.1
1,218,299 + CCNA_01113 0.17 -1.0
1,218,306 - CCNA_01113 0.18 +0.5
1,218,306 - CCNA_01113 0.18 +0.5
1,218,340 - CCNA_01113 0.21 +0.5
1,218,342 + CCNA_01113 0.21 -1.3
1,218,353 + CCNA_01113 0.23 -1.6
1,218,353 + CCNA_01113 0.23 +0.8
1,218,353 + CCNA_01113 0.23 -0.8
1,218,353 + CCNA_01113 0.23 -0.9
1,218,353 + CCNA_01113 0.23 -1.6
1,218,353 + CCNA_01113 0.23 -2.8
1,218,353 + CCNA_01113 0.23 +1.9
1,218,353 + CCNA_01113 0.23 +0.9
1,218,361 - CCNA_01113 0.23 +0.2
1,218,361 - CCNA_01113 0.23 +1.1
1,218,361 - CCNA_01113 0.23 +0.5
1,218,361 - CCNA_01113 0.23 -0.5
1,218,361 - CCNA_01113 0.23 +0.1
1,218,361 - CCNA_01113 0.23 -0.6
1,218,363 + CCNA_01113 0.24 +2.5
1,218,363 + CCNA_01113 0.24 +1.6
1,218,363 + CCNA_01113 0.24 +2.9
1,218,363 + CCNA_01113 0.24 +1.9
1,218,363 + CCNA_01113 0.24 +2.1
1,218,363 + CCNA_01113 0.24 +2.0
1,218,363 + CCNA_01113 0.24 +1.6
1,218,363 + CCNA_01113 0.24 +1.9
1,218,363 + CCNA_01113 0.24 +1.9
1,218,363 + CCNA_01113 0.24 +1.6
1,218,371 - CCNA_01113 0.24 -0.2
1,218,371 - CCNA_01113 0.24 -2.4
1,218,371 - CCNA_01113 0.24 +1.2
1,218,395 - CCNA_01113 0.27 +0.5
1,218,415 - CCNA_01113 0.29 +0.9
1,218,419 + CCNA_01113 0.30 -0.2
1,218,427 - CCNA_01113 0.30 +1.0
1,218,427 - CCNA_01113 0.30 +1.1
1,218,438 + CCNA_01113 0.32 -2.6
1,218,438 + CCNA_01113 0.32 -2.4
1,218,438 + CCNA_01113 0.32 -0.5
1,218,443 + CCNA_01113 0.32 +1.8
1,218,446 - CCNA_01113 0.32 +1.8
1,218,446 - CCNA_01113 0.32 +1.1
1,218,446 - CCNA_01113 0.32 +1.3
1,218,448 + CCNA_01113 0.33 -0.5
1,218,448 + CCNA_01113 0.33 -1.7
1,218,448 + CCNA_01113 0.33 -0.3
1,218,448 + CCNA_01113 0.33 +2.5
1,218,448 + CCNA_01113 0.33 +1.2
1,218,456 - CCNA_01113 0.33 +0.4
1,218,456 - CCNA_01113 0.33 +1.8
1,218,456 - CCNA_01113 0.33 +0.5
1,218,456 - CCNA_01113 0.33 +0.2
1,218,456 - CCNA_01113 0.33 +1.5
1,218,456 - CCNA_01113 0.33 +1.7
1,218,456 - CCNA_01113 0.33 +0.8
1,218,456 - CCNA_01113 0.33 +0.1
1,218,456 - CCNA_01113 0.33 -0.3
1,218,488 + CCNA_01113 0.37 -0.2
1,218,488 - CCNA_01113 0.37 -0.3
1,218,494 + CCNA_01113 0.37 -0.8
1,218,502 - CCNA_01113 0.38 +1.2
1,218,502 - CCNA_01113 0.38 +0.8
1,218,502 - CCNA_01113 0.38 +1.0
1,218,502 - CCNA_01113 0.38 +0.4
1,218,541 + CCNA_01113 0.42 -1.3
1,218,544 - CCNA_01113 0.43 -0.2
1,218,572 - CCNA_01113 0.46 -1.7
1,218,574 - CCNA_01113 0.46 +0.3
1,218,582 - CCNA_01113 0.47 +0.6
1,218,664 - CCNA_01113 0.55 +1.5
1,218,672 - CCNA_01113 0.56 +2.1
1,218,724 + CCNA_01113 0.62 +0.1
1,218,732 - CCNA_01113 0.63 +0.8
1,218,732 - CCNA_01113 0.63 -0.0
1,218,732 - CCNA_01113 0.63 -0.1
1,218,760 - CCNA_01113 0.66 +1.4
1,218,765 - -0.5
1,218,789 + CCNA_01113 0.69 -0.1
1,218,789 + CCNA_01113 0.69 +0.9
1,218,797 - CCNA_01113 0.69 -0.1
1,218,803 - CCNA_01113 0.70 +0.9
1,218,849 + CCNA_01113 0.75 -0.4
1,218,851 + CCNA_01113 0.75 -2.8
1,218,868 - CCNA_01113 0.77 -0.1
1,218,876 - CCNA_01113 0.78 +0.2
1,218,904 + CCNA_01113 0.81 -1.9
1,218,904 + CCNA_01113 0.81 -0.5
1,218,912 - CCNA_01113 0.82 +0.6
1,219,008 - -0.3
1,219,008 - +0.5
1,219,026 - -0.3
1,219,037 + +0.3
1,219,052 + -3.2
1,219,052 + -2.1
1,219,060 - +1.0
1,219,499 + -1.2
1,219,518 - -0.9
1,219,535 + -1.0
1,219,543 - +0.1
1,219,543 - -1.1
1,219,554 + +0.6
1,219,562 - -0.5
1,219,596 + -1.5
1,219,599 - +0.1
1,219,601 - -1.5
1,219,602 + -1.1
1,219,610 - -1.3
1,219,659 - CCNA_01115 0.14 -0.6
1,219,692 - CCNA_01115 0.18 -1.2
1,219,694 + CCNA_01115 0.19 -1.3
1,219,715 - CCNA_01115 0.21 +0.6
1,219,751 - CCNA_01115 0.26 +0.5
1,219,751 - CCNA_01115 0.26 +1.2
1,219,775 - CCNA_01115 0.29 +0.0
1,219,812 - CCNA_01115 0.33 +0.8
1,219,833 + CCNA_01115 0.36 -0.1
1,219,834 - CCNA_01115 0.36 -0.7
1,219,856 - CCNA_01115 0.39 +0.1
1,219,861 - CCNA_01115 0.40 -0.8
1,219,862 + CCNA_01115 0.40 -1.2
1,219,862 + CCNA_01115 0.40 -1.7
1,219,870 - CCNA_01115 0.41 -1.4
1,219,870 - CCNA_01115 0.41 -1.0
1,219,890 + CCNA_01115 0.43 -1.2
1,219,890 + CCNA_01115 0.43 +0.2
1,220,002 - CCNA_01115 0.57 +0.2
1,220,033 - CCNA_01115 0.61 -0.9
1,220,060 - CCNA_01115 0.65 +0.2
1,220,061 + CCNA_01115 0.65 +1.9
1,220,061 + CCNA_01115 0.65 +2.6
1,220,092 - CCNA_01115 0.69 -1.9
1,220,102 - CCNA_01115 0.70 +0.9
1,220,113 + CCNA_01115 0.71 -1.6
1,220,113 + CCNA_01115 0.71 -0.6
1,220,123 + CCNA_01115 0.73 -0.1
1,220,123 + CCNA_01115 0.73 -3.0
1,220,130 + CCNA_01115 0.74 +0.2
1,220,130 + CCNA_01115 0.74 +0.4
1,220,131 - CCNA_01115 0.74 +0.9
1,220,138 - CCNA_01115 0.75 -1.2
1,220,138 - CCNA_01115 0.75 +0.7
1,220,177 + CCNA_01115 0.80 -2.4
1,220,177 + CCNA_01115 0.80 +1.3
1,220,177 + CCNA_01115 0.80 -0.6
1,220,177 + CCNA_01115 0.80 -0.3
1,220,185 - CCNA_01115 0.81 -0.3
1,220,185 - CCNA_01115 0.81 -0.5
1,220,185 - CCNA_01115 0.81 -0.2
1,220,185 - CCNA_01115 0.81 -0.6
1,220,194 - CCNA_01115 0.82 -1.1
1,220,194 - CCNA_01115 0.82 +1.0
1,220,194 - CCNA_01115 0.82 -1.7
1,220,212 + CCNA_01115 0.84 -1.6
1,220,215 + CCNA_01115 0.84 -2.3
1,220,252 - CCNA_01115 0.89 -0.2
1,220,266 - -1.3
1,220,298 + +0.1
1,220,303 + +0.1
1,220,303 + +3.3
1,220,311 - -0.7
1,220,311 - +0.6
1,220,311 - -1.3
1,220,315 + -0.1
1,220,334 + +0.2
1,220,342 - +0.9
1,220,350 + -1.9
1,220,352 + -1.9
1,220,352 + -1.9
1,220,387 + -2.2
1,220,457 + -1.9
1,220,457 + +1.2
1,220,463 + -1.1
1,220,465 - +0.5
1,220,467 - -2.1
1,220,467 - -2.2
1,220,480 + -0.7
1,220,480 + +1.1
1,220,488 - -1.5
1,220,496 + +1.9
1,220,497 + +0.9

Or see this region's nucleotide sequence