Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00578 and CCNA_00579 are separated by 176 nucleotides CCNA_00579 and CCNA_00580 are separated by 197 nucleotides
CCNA_00578: CCNA_00578 - family 67 glycosyl hydrolase protein, at 601,496 to 604,033
_00578
CCNA_00579: CCNA_00579 - endonuclease, at 604,210 to 606,009
_00579
CCNA_00580: CCNA_00580 - AAA ATPase domain protein, at 606,207 to 609,290
_00580
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 603.220 kb on + strand, within CCNA_00578 at 603.234 kb on + strand, within CCNA_00578 at 603.254 kb on + strand, within CCNA_00578 at 603.254 kb on + strand, within CCNA_00578 at 603.262 kb on + strand, within CCNA_00578 at 603.275 kb on - strand, within CCNA_00578 at 603.337 kb on + strand, within CCNA_00578 at 603.337 kb on + strand, within CCNA_00578 at 603.345 kb on - strand, within CCNA_00578 at 603.345 kb on - strand, within CCNA_00578 at 603.401 kb on + strand, within CCNA_00578 at 603.419 kb on + strand, within CCNA_00578 at 603.476 kb on - strand, within CCNA_00578 at 603.577 kb on + strand, within CCNA_00578 at 603.577 kb on + strand, within CCNA_00578 at 603.625 kb on + strand, within CCNA_00578 at 603.625 kb on - strand, within CCNA_00578 at 603.661 kb on - strand, within CCNA_00578 at 603.677 kb on + strand, within CCNA_00578 at 603.678 kb on - strand, within CCNA_00578 at 603.707 kb on + strand, within CCNA_00578 at 603.707 kb on + strand, within CCNA_00578 at 603.715 kb on - strand, within CCNA_00578 at 603.757 kb on - strand, within CCNA_00578 at 603.790 kb on - strand at 603.790 kb on - strand at 603.801 kb on + strand at 603.809 kb on - strand at 603.827 kb on + strand at 603.835 kb on - strand at 603.835 kb on - strand at 603.835 kb on - strand at 603.863 kb on - strand at 603.868 kb on + strand at 603.874 kb on + strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.882 kb on - strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.884 kb on + strand at 603.892 kb on - strand at 603.948 kb on + strand at 603.965 kb on + strand at 603.999 kb on + strand at 604.014 kb on - strand at 604.046 kb on - strand at 604.084 kb on - strand at 604.240 kb on - strand at 604.247 kb on + strand at 604.251 kb on - strand at 604.266 kb on - strand at 604.317 kb on + strand at 604.325 kb on - strand at 604.325 kb on - strand at 604.325 kb on - strand at 604.327 kb on - strand at 604.389 kb on + strand at 604.389 kb on + strand at 604.399 kb on + strand, within CCNA_00579 at 604.417 kb on - strand, within CCNA_00579 at 604.456 kb on + strand, within CCNA_00579 at 604.457 kb on - strand, within CCNA_00579 at 604.464 kb on - strand, within CCNA_00579 at 604.486 kb on + strand, within CCNA_00579 at 604.486 kb on + strand, within CCNA_00579 at 604.496 kb on + strand, within CCNA_00579 at 604.496 kb on + strand, within CCNA_00579 at 604.535 kb on - strand, within CCNA_00579 at 604.557 kb on - strand, within CCNA_00579 at 604.638 kb on + strand, within CCNA_00579 at 604.646 kb on + strand, within CCNA_00579 at 604.673 kb on + strand, within CCNA_00579 at 604.673 kb on + strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.681 kb on - strand, within CCNA_00579 at 604.684 kb on + strand, within CCNA_00579 at 604.704 kb on - strand, within CCNA_00579 at 604.712 kb on - strand, within CCNA_00579 at 604.720 kb on + strand, within CCNA_00579 at 604.762 kb on + strand, within CCNA_00579 at 604.770 kb on - strand, within CCNA_00579 at 604.796 kb on + strand, within CCNA_00579 at 604.811 kb on + strand, within CCNA_00579 at 604.811 kb on + strand, within CCNA_00579 at 604.826 kb on - strand, within CCNA_00579 at 604.837 kb on + strand, within CCNA_00579 at 604.855 kb on + strand, within CCNA_00579 at 604.880 kb on + strand, within CCNA_00579 at 604.880 kb on + strand, within CCNA_00579 at 604.918 kb on - strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.935 kb on + strand, within CCNA_00579 at 604.942 kb on - strand, within CCNA_00579 at 604.954 kb on - strand, within CCNA_00579 at 604.988 kb on - strand, within CCNA_00579 at 604.993 kb on + strand, within CCNA_00579 at 605.017 kb on + strand, within CCNA_00579 at 605.017 kb on + strand, within CCNA_00579 at 605.022 kb on + strand, within CCNA_00579 at 605.022 kb on + strand, within CCNA_00579 at 605.030 kb on - strand, within CCNA_00579 at 605.091 kb on + strand, within CCNA_00579 at 605.092 kb on + strand, within CCNA_00579 at 605.092 kb on + strand, within CCNA_00579 at 605.094 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.100 kb on - strand, within CCNA_00579 at 605.148 kb on + strand, within CCNA_00579 at 605.179 kb on - strand, within CCNA_00579 at 605.184 kb on - strand, within CCNA_00579 at 605.236 kb on + strand, within CCNA_00579 at 605.244 kb on - strand, within CCNA_00579 at 605.248 kb on + strand, within CCNA_00579 at 605.248 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.263 kb on + strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.271 kb on - strand, within CCNA_00579 at 605.286 kb on + strand, within CCNA_00579 at 605.286 kb on + strand, within CCNA_00579 at 605.291 kb on + strand, within CCNA_00579 at 605.294 kb on - strand, within CCNA_00579 at 605.294 kb on - strand at 605.296 kb on + strand, within CCNA_00579 at 605.296 kb on + strand, within CCNA_00579 at 605.304 kb on - strand, within CCNA_00579 at 605.304 kb on - strand, within CCNA_00579 at 605.351 kb on + strand, within CCNA_00579 at 605.379 kb on - strand, within CCNA_00579 at 605.402 kb on - strand, within CCNA_00579 at 605.409 kb on + strand, within CCNA_00579 at 605.417 kb on - strand, within CCNA_00579 at 605.425 kb on + strand, within CCNA_00579 at 605.455 kb on - strand, within CCNA_00579 at 605.460 kb on + strand, within CCNA_00579 at 605.495 kb on - strand at 605.528 kb on + strand, within CCNA_00579 at 605.528 kb on + strand, within CCNA_00579 at 605.543 kb on + strand, within CCNA_00579 at 605.543 kb on + strand, within CCNA_00579 at 605.561 kb on + strand, within CCNA_00579 at 605.563 kb on - strand, within CCNA_00579 at 605.569 kb on - strand, within CCNA_00579 at 605.597 kb on + strand, within CCNA_00579 at 605.605 kb on + strand, within CCNA_00579 at 605.613 kb on - strand, within CCNA_00579 at 605.634 kb on + strand, within CCNA_00579 at 605.636 kb on + strand, within CCNA_00579 at 605.644 kb on - strand, within CCNA_00579 at 605.661 kb on + strand, within CCNA_00579 at 605.693 kb on + strand, within CCNA_00579 at 605.695 kb on + strand, within CCNA_00579 at 605.695 kb on + strand, within CCNA_00579 at 605.703 kb on - strand, within CCNA_00579 at 605.726 kb on - strand, within CCNA_00579 at 605.732 kb on + strand, within CCNA_00579 at 605.751 kb on + strand, within CCNA_00579 at 605.759 kb on - strand, within CCNA_00579 at 605.759 kb on - strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.800 kb on + strand, within CCNA_00579 at 605.821 kb on + strand, within CCNA_00579 at 605.827 kb on + strand, within CCNA_00579 at 605.846 kb on + strand at 605.866 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.885 kb on + strand at 605.893 kb on - strand at 605.893 kb on - strand at 605.926 kb on - strand at 605.938 kb on + strand at 605.946 kb on - strand at 605.951 kb on + strand at 605.970 kb on - strand at 606.026 kb on + strand at 606.044 kb on - strand at 606.061 kb on + strand at 606.061 kb on + strand at 606.061 kb on + strand at 606.069 kb on - strand at 606.081 kb on + strand at 606.084 kb on - strand at 606.096 kb on + strand at 606.146 kb on + strand at 606.151 kb on + strand at 606.151 kb on + strand at 606.192 kb on + strand at 606.192 kb on + strand at 606.224 kb on - strand at 606.359 kb on - strand at 606.367 kb on + strand at 606.394 kb on + strand at 606.439 kb on + strand at 606.447 kb on - strand at 606.462 kb on + strand at 606.602 kb on + strand, within CCNA_00580 at 606.602 kb on + strand, within CCNA_00580 at 606.662 kb on - strand, within CCNA_00580 at 606.709 kb on + strand, within CCNA_00580 at 606.711 kb on - strand, within CCNA_00580 at 606.717 kb on - strand, within CCNA_00580 at 606.781 kb on - strand, within CCNA_00580 at 606.791 kb on + strand, within CCNA_00580 at 606.892 kb on - strand, within CCNA_00580 at 606.892 kb on - strand, within CCNA_00580 at 606.908 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand, within CCNA_00580 at 606.915 kb on + strand at 606.915 kb on + strand, within CCNA_00580 at 606.922 kb on + strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.923 kb on - strand, within CCNA_00580 at 606.924 kb on + strand, within CCNA_00580
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 603,220 + CCNA_00578 0.68 -1.1 603,234 + CCNA_00578 0.68 -1.3 603,254 + CCNA_00578 0.69 -0.4 603,254 + CCNA_00578 0.69 -0.5 603,262 + CCNA_00578 0.70 -0.8 603,275 - CCNA_00578 0.70 -1.2 603,337 + CCNA_00578 0.73 -0.6 603,337 + CCNA_00578 0.73 -0.4 603,345 - CCNA_00578 0.73 -1.1 603,345 - CCNA_00578 0.73 +0.8 603,401 + CCNA_00578 0.75 -0.7 603,419 + CCNA_00578 0.76 -0.3 603,476 - CCNA_00578 0.78 -2.1 603,577 + CCNA_00578 0.82 +0.0 603,577 + CCNA_00578 0.82 -0.4 603,625 + CCNA_00578 0.84 +0.5 603,625 - CCNA_00578 0.84 +1.2 603,661 - CCNA_00578 0.85 -1.3 603,677 + CCNA_00578 0.86 -0.3 603,678 - CCNA_00578 0.86 -1.4 603,707 + CCNA_00578 0.87 +1.8 603,707 + CCNA_00578 0.87 -0.2 603,715 - CCNA_00578 0.87 +0.9 603,757 - CCNA_00578 0.89 -0.4 603,790 - -1.1 603,790 - +0.0 603,801 + +0.9 603,809 - -0.5 603,827 + -0.5 603,835 - -2.0 603,835 - -0.8 603,835 - -1.6 603,863 - -1.7 603,868 + +0.8 603,874 + +0.1 603,882 - +0.2 603,882 - +0.4 603,882 - +0.8 603,882 - +1.4 603,882 - -0.0 603,882 - +1.5 603,882 - +0.0 603,882 - +0.5 603,882 - -0.5 603,884 + +2.2 603,884 + -0.9 603,884 + +0.1 603,884 + +0.3 603,884 + +1.5 603,884 + +0.6 603,892 - -0.8 603,948 + +0.8 603,965 + -1.1 603,999 + +0.5 604,014 - +1.0 604,046 - +4.4 604,084 - -0.4 604,240 - +1.3 604,247 + +0.3 604,251 - -0.1 604,266 - +1.0 604,317 + -1.6 604,325 - +1.5 604,325 - +1.6 604,325 - +0.0 604,327 - +0.3 604,389 + -1.0 604,389 + -0.0 604,399 + CCNA_00579 0.10 -0.5 604,417 - CCNA_00579 0.12 +0.5 604,456 + CCNA_00579 0.14 -2.2 604,457 - CCNA_00579 0.14 -2.3 604,464 - CCNA_00579 0.14 +0.7 604,486 + CCNA_00579 0.15 -0.8 604,486 + CCNA_00579 0.15 +0.7 604,496 + CCNA_00579 0.16 -2.6 604,496 + CCNA_00579 0.16 -1.2 604,535 - CCNA_00579 0.18 -1.7 604,557 - CCNA_00579 0.19 -2.0 604,638 + CCNA_00579 0.24 +0.6 604,646 + CCNA_00579 0.24 -2.9 604,673 + CCNA_00579 0.26 -0.9 604,673 + CCNA_00579 0.26 -1.6 604,681 - CCNA_00579 0.26 -1.6 604,681 - CCNA_00579 0.26 -1.0 604,681 - CCNA_00579 0.26 -0.7 604,684 + CCNA_00579 0.26 +0.8 604,704 - CCNA_00579 0.27 -2.0 604,712 - CCNA_00579 0.28 +1.8 604,720 + CCNA_00579 0.28 -1.5 604,762 + CCNA_00579 0.31 -0.1 604,770 - CCNA_00579 0.31 +0.2 604,796 + CCNA_00579 0.33 +0.7 604,811 + CCNA_00579 0.33 -0.2 604,811 + CCNA_00579 0.33 -1.9 604,826 - CCNA_00579 0.34 -1.5 604,837 + CCNA_00579 0.35 -0.0 604,855 + CCNA_00579 0.36 -0.3 604,880 + CCNA_00579 0.37 +0.2 604,880 + CCNA_00579 0.37 -1.5 604,918 - CCNA_00579 0.39 -1.1 604,935 + CCNA_00579 0.40 -2.2 604,935 + CCNA_00579 0.40 +1.1 604,935 + CCNA_00579 0.40 -1.7 604,942 - CCNA_00579 0.41 -0.7 604,954 - CCNA_00579 0.41 -1.3 604,988 - CCNA_00579 0.43 -1.0 604,993 + CCNA_00579 0.43 -0.4 605,017 + CCNA_00579 0.45 +1.4 605,017 + CCNA_00579 0.45 -2.3 605,022 + CCNA_00579 0.45 +0.9 605,022 + CCNA_00579 0.45 +0.3 605,030 - CCNA_00579 0.46 -0.6 605,091 + CCNA_00579 0.49 -0.9 605,092 + CCNA_00579 0.49 -0.9 605,092 + CCNA_00579 0.49 -1.0 605,094 - CCNA_00579 0.49 -0.9 605,100 - CCNA_00579 0.49 -1.7 605,100 - CCNA_00579 0.49 -0.6 605,100 - CCNA_00579 0.49 -1.9 605,148 + CCNA_00579 0.52 -0.2 605,179 - CCNA_00579 0.54 +1.3 605,184 - CCNA_00579 0.54 -0.7 605,236 + CCNA_00579 0.57 -0.9 605,244 - CCNA_00579 0.57 -0.7 605,248 + CCNA_00579 0.58 +0.6 605,248 + CCNA_00579 0.58 +0.1 605,263 + CCNA_00579 0.58 +0.6 605,263 + CCNA_00579 0.58 -0.3 605,263 + CCNA_00579 0.58 -1.0 605,263 + CCNA_00579 0.58 -0.8 605,263 + CCNA_00579 0.58 +0.2 605,271 - CCNA_00579 0.59 -0.7 605,271 - CCNA_00579 0.59 -0.5 605,271 - CCNA_00579 0.59 +0.7 605,286 + CCNA_00579 0.60 +0.1 605,286 + CCNA_00579 0.60 +1.4 605,291 + CCNA_00579 0.60 -0.6 605,294 - CCNA_00579 0.60 +0.0 605,294 - +0.5 605,296 + CCNA_00579 0.60 -0.6 605,296 + CCNA_00579 0.60 +0.9 605,304 - CCNA_00579 0.61 +1.6 605,304 - CCNA_00579 0.61 +2.3 605,351 + CCNA_00579 0.63 +2.1 605,379 - CCNA_00579 0.65 +0.7 605,402 - CCNA_00579 0.66 +0.3 605,409 + CCNA_00579 0.67 +0.2 605,417 - CCNA_00579 0.67 -0.1 605,425 + CCNA_00579 0.68 +1.6 605,455 - CCNA_00579 0.69 -0.0 605,460 + CCNA_00579 0.69 -0.5 605,495 - +0.5 605,528 + CCNA_00579 0.73 +0.0 605,528 + CCNA_00579 0.73 +0.4 605,543 + CCNA_00579 0.74 +0.1 605,543 + CCNA_00579 0.74 -1.8 605,561 + CCNA_00579 0.75 +0.5 605,563 - CCNA_00579 0.75 -1.6 605,569 - CCNA_00579 0.76 -0.9 605,597 + CCNA_00579 0.77 -0.6 605,605 + CCNA_00579 0.78 -2.5 605,613 - CCNA_00579 0.78 +0.9 605,634 + CCNA_00579 0.79 +1.5 605,636 + CCNA_00579 0.79 +0.2 605,644 - CCNA_00579 0.80 -1.4 605,661 + CCNA_00579 0.81 -0.2 605,693 + CCNA_00579 0.82 +0.7 605,695 + CCNA_00579 0.82 -2.1 605,695 + CCNA_00579 0.82 +2.3 605,703 - CCNA_00579 0.83 +2.1 605,726 - CCNA_00579 0.84 +0.3 605,732 + CCNA_00579 0.85 -2.0 605,751 + CCNA_00579 0.86 -0.9 605,759 - CCNA_00579 0.86 -0.2 605,759 - CCNA_00579 0.86 -0.3 605,800 + CCNA_00579 0.88 -1.3 605,800 + CCNA_00579 0.88 -1.1 605,800 + CCNA_00579 0.88 -1.0 605,821 + CCNA_00579 0.90 -0.3 605,827 + CCNA_00579 0.90 -2.8 605,846 + +0.6 605,866 + -2.4 605,885 + -0.5 605,885 + -1.3 605,885 + +0.8 605,885 + +0.4 605,885 + +1.0 605,885 + -0.8 605,885 + -0.5 605,893 - +0.6 605,893 - -0.1 605,926 - -2.3 605,938 + -2.1 605,946 - +0.2 605,951 + -2.5 605,970 - +2.3 606,026 + -0.5 606,044 - -2.5 606,061 + -1.2 606,061 + +0.5 606,061 + -1.5 606,069 - -2.2 606,081 + -0.5 606,084 - -0.5 606,096 + +0.3 606,146 + -0.6 606,151 + -0.1 606,151 + -1.1 606,192 + -0.1 606,192 + -0.3 606,224 - -0.6 606,359 - -0.0 606,367 + -0.6 606,394 + -0.9 606,439 + -0.3 606,447 - +1.5 606,462 + -1.3 606,602 + CCNA_00580 0.13 +1.1 606,602 + CCNA_00580 0.13 +0.6 606,662 - CCNA_00580 0.15 +0.0 606,709 + CCNA_00580 0.16 +1.1 606,711 - CCNA_00580 0.16 -0.8 606,717 - CCNA_00580 0.17 +0.1 606,781 - CCNA_00580 0.19 +0.4 606,791 + CCNA_00580 0.19 +1.8 606,892 - CCNA_00580 0.22 +0.1 606,892 - CCNA_00580 0.22 +0.5 606,908 + CCNA_00580 0.23 -0.9 606,915 + CCNA_00580 0.23 -0.7 606,915 + CCNA_00580 0.23 -0.5 606,915 + CCNA_00580 0.23 -0.5 606,915 + +0.2 606,915 + CCNA_00580 0.23 -0.5 606,922 + CCNA_00580 0.23 +2.4 606,923 - CCNA_00580 0.23 -1.1 606,923 - CCNA_00580 0.23 -0.9 606,923 - CCNA_00580 0.23 +0.6 606,923 - CCNA_00580 0.23 -0.1 606,924 + CCNA_00580 0.23 -0.5
Or see this region's nucleotide sequence